HHsearch alignment for GI: 254780163 and conserved domain: cd03115
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.11 E-value=0.031 Score=35.19 Aligned_cols=37 Identities=30% Similarity=0.236 Sum_probs=27.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHH
Q ss_conf 489667641166899999999854898834520144554046
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMG 269 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~ 269 (798)
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~-----~kV~lit~Dt~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG-----KKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-----CEEEEEECCCC
T ss_conf 99989999988999999999999769-----92899974887