HHsearch alignment for GI: 254780163 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.20 E-value=0.025 Score=35.88 Aligned_cols=93 Identities=20% Similarity=0.318 Sum_probs=55.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHH--CCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCC-----CCHHHHHCCCEEEE
Q ss_conf 6886143200388999998730--4773377206886124653011047800025644431-----00355515851777
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAFA--LGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI-----LADSVDQNPYSVVL 581 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~~--~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~-----Lte~vr~~P~sVvl 581 (798)
T Consensus 28 ~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~~-------------~i~y~~QLSgGqkqr~~la~al~~~p-~ili 93 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLLENP-NLLL 93 (144)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCC-------------EEEEEHHCCHHHHHHHHHHHHHCCCC-CEEE
T ss_conf 999998999849999999848988985099999960-------------89987007999999999999972599-8999
Q ss_pred ECCHHH-CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCC
Q ss_conf 404455-0289999999987775021779977612542999942421
Q gi|254780163|r 582 LDEIEK-SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAG 627 (798)
Q Consensus 582 ~DEiEK-Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G 627 (798)
T Consensus 94 LDEPt~~LD~~~~~~i~~~l~~------------~~~tii~vsHd~~ 128 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKE------------YPGTVILVSHDRY 128 (144)
T ss_pred EECCCCCCCHHHHHHHHHHHHH------------CCCEEEEEECCHH
T ss_conf 9577555899999999999997------------0999999967989