HHsearch alignment for GI: 254780163 and conserved domain: pfam00308
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.62 E-value=3e-06 Score=64.10 Aligned_cols=191 Identities=17% Similarity=0.269 Sum_probs=112.6
Q ss_pred HHHHHHHHHCC--CCCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH-HHHHHHHH
Q ss_conf 99999986226--77874896-6764116689999999985489883452014455404675306343123-78999999
Q gi|254780163|r 213 INRTIQILCRR--SKNNPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-FEERIKKI 288 (798)
Q Consensus 213 I~riiqIL~RR--~KNn~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-fe~r~~~~ 288 (798)
T Consensus 19 a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~-----~~~~v~yl~~~~~~~~--~~~~l~~~~~~~f 91 (219)
T pfam00308 19 AHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNF-----PNLRVVYLTSEEFLND--FVDALRDNKIEAF 91 (219)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEEHHHHHHH--HHHHHHCCCHHHH
T ss_conf 99999999967587678269988999988899999999999849-----9982888439999998--8999981888899
Q ss_pred HHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCHHHHHHC---EEEEE
Q ss_conf 98720389839997361663015544434477788887663026603887304-899999852011143200---14430
Q gi|254780163|r 289 VKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTT-YSEYRQFFEKDKALVRRF---QKIDV 364 (798)
Q Consensus 289 ~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT-~~ey~~~~e~d~al~rrF---~~i~v 364 (798)
T Consensus 92 ~~~l~~--~d~l~iDDi~~l~~~~~~ee---~lf~l~N~~~~~~~~lllts~~~p~~l~-~~~~d--L~SRL~~g~~~~i 163 (219)
T pfam00308 92 KKSYRN--VDLLLIDDIQFLAGKEKTQE---EFFHTFNALHENNKQIVLTSDRPPKELE-GFEDR--LRSRFEWGLIIAI 163 (219)
T ss_pred HHHHHH--CCHHHHCCHHHHCCCHHHHH---HHHHHHHHHHHCCCEEEEECCCCCCCCC-CCCHH--HHHHHHCCEEEEC
T ss_conf 999763--23365223676568647899---9999999999729869997799810024-53277--9999868756611
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6878689999998612766541035121117899999865420155564679889986533332
Q gi|254780163|r 365 SEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQI 428 (798)
Q Consensus 365 ~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~ 428 (798)
T Consensus 164 ~~pdd~~~~~iL~~----~a~~r~l~l~~~v~~yl~~r~~R~~r------~L~~~L~~L~~~~~ 217 (219)
T pfam00308 164 EPPDLETRLAILRK----KAEEENINIPNEVLNFIAQRITDNVR------ELEGALNRLLAFAS 217 (219)
T ss_pred CCCCHHHHHHHHHH----HHHHCCCCCCHHHHHHHHHHCCCCHH------HHHHHHHHHHHHHC
T ss_conf 69999999999999----99984999999999999984279899------99999999998550