HHsearch alignment for GI: 254780163 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.36 E-value=0.00024 Score=50.37 Aligned_cols=112 Identities=22% Similarity=0.323 Sum_probs=50.8
Q ss_pred EEEEECCCCHHHHHHHHHHH-----HHCCCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCC---CCCCCHHH---HH
Q ss_conf 68861432003889999987-----304773377206---886124653011047800025644---43100355---51
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLA-----FALGVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQ---GGILADSV---DQ 574 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la-----~~~~~~lir~dm---sey~e~~~vs~LiGappGYvG~~e---gg~Lte~v---r~ 574 (798)
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~-~~~~~~~d~~~~~~~~l~~~~~ 81 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPV-FGSGTGSDPAAVAFDAVEKAKA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHHHHH
T ss_conf 999989999988999999999999779928999758776889999999998639817-8148777878999999999884
Q ss_pred CCCEEEEECCHHHCCHH--HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHH
Q ss_conf 58517774044550289--9999999877750217799776125429999424214553
Q gi|254780163|r 575 NPYSVVLLDEIEKSHPD--VLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEM 631 (798)
Q Consensus 575 ~P~sVvl~DEiEKAh~~--v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~ 631 (798)
T Consensus 82 ~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~----------~~~~~~LVl~a~~~~~~~ 130 (196)
T pfam00448 82 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVI----------APDEVLLVLDATTGQNAL 130 (196)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHC----------CCCCEEEEEECCCCCCHH
T ss_conf 6899999989998747677899999998522----------873028998567782137