HHsearch alignment for GI: 254780163 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.36  E-value=0.00024  Score=50.37  Aligned_cols=112  Identities=22%  Similarity=0.323  Sum_probs=50.8

Q ss_pred             EEEEECCCCHHHHHHHHHHH-----HHCCCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCC---CCCCCHHH---HH
Q ss_conf             68861432003889999987-----304773377206---886124653011047800025644---43100355---51
Q gi|254780163|r  509 CYVFSGPTGVGKTEISKQLA-----FALGVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQ---GGILADSV---DQ  574 (798)
Q Consensus       509 ~flf~GptGvGKTelak~la-----~~~~~~lir~dm---sey~e~~~vs~LiGappGYvG~~e---gg~Lte~v---r~  574 (798)
T Consensus         3 vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~-~~~~~~~d~~~~~~~~l~~~~~   81 (196)
T pfam00448         3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPV-FGSGTGSDPAAVAFDAVEKAKA   81 (196)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHHHHH
T ss_conf             999989999988999999999999779928999758776889999999998639817-8148777878999999999884


Q ss_pred             CCCEEEEECCHHHCCHH--HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHH
Q ss_conf             58517774044550289--9999999877750217799776125429999424214553
Q gi|254780163|r  575 NPYSVVLLDEIEKSHPD--VLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEM  631 (798)
Q Consensus       575 ~P~sVvl~DEiEKAh~~--v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~  631 (798)
T Consensus        82 ~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~----------~~~~~~LVl~a~~~~~~~  130 (196)
T pfam00448        82 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVI----------APDEVLLVLDATTGQNAL  130 (196)
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHC----------CCCCEEEEEECCCCCCHH
T ss_conf             6899999989998747677899999998522----------873028998567782137