HHsearch alignment for GI: 254780163 and conserved domain: pfam00493

Probab=98.77  E-value=7e-07  Score=68.60  Aligned_cols=221  Identities=17%  Similarity=0.239  Sum_probs=129.1

Q ss_pred             HHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCC----CCC--CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             334210000246653458999999999877520445----657--87406886143200388999998730477337720
Q gi|254780163|r  466 SVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLS----DPN--KPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFD  539 (798)
Q Consensus       466 ~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~----~~~--rP~g~flf~GptGvGKTelak~la~~~~~~lir~d  539 (798)
T Consensus        13 ~~~~~l~~siaP~i~G~~~vK~ai~l~l~g---g~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg   89 (327)
T pfam00493        13 DIYDKLARSIAPSIYGHEDVKKAILLQLFG---GVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSG   89 (327)
T ss_pred             CHHHHHHHHHCCCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf             399999998597124987999999999808---98765888862036511898469981560999999986887088317


Q ss_pred             HHHHHCCCCCCHHCCCC---CHHCCCC-CCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCC-CCEEC
Q ss_conf             68861246530110478---0002564-4431003555158517774044550289999999987775021779-97761
Q gi|254780163|r  540 MSEYMERHAVSRLIGAP---PGYVGFG-QGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQS-GKKIS  614 (798)
Q Consensus       540 msey~e~~~vs~LiGap---pGYvG~~-egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~-Gr~vd  614 (798)
T Consensus        90 ~~-----ss~~GLTa~~~~d~~~~~~~leaGalvlA----d~Gv~cIDEfdk~~~~d~saL~EAMEqqtVsIaKaGi~~t  160 (327)
T pfam00493        90 KG-----SSAAGLTAAVVRDPDTGEWTLEAGALVLA----DGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVAT  160 (327)
T ss_pred             CC-----CCCCCCEEEEEEECCCCCEEEECCCEEEC----CCCEEEEECCCCCCHHHHHHHHHHHHHCEEEEECCCEEEE
T ss_conf             76-----65677615899806888369836847755----8982785005558876799999999868177633853897


Q ss_pred             CC-CEEEEEECCCCHHHHHHCCCC-CCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECC-CCCHHHHHHHHHHHHH-----
Q ss_conf             25-429999424214553303689-882111488999998728878817768289628-8999999999999999-----
Q gi|254780163|r  615 FR-NVILIMTTNAGALEMSKARIG-FGSSRNDDADKEALRNFLSPEFLNRLDSIIPFF-PLSSDIIRQVVHKFIM-----  686 (798)
Q Consensus       615 f~-n~iii~TsN~G~~~~~~~~~g-~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~-~l~~~~~~~i~~~~l~-----  686 (798)
T Consensus       161 L~ar~sVlAaaNP--------~~g~yd~~---~~~~~n--i~Lp~~lLsRFDLif~l~D~~~~~~D~~ia~~i~~~~~~~  227 (327)
T pfam00493       161 LNARCSVLAAANP--------IFGRYDPK---KSVAEN--INLPPPLLSRFDLIFVLLDKPDEEKDEELAKHIVDLHRHG  227 (327)
T ss_pred             ECCCCEEEEEECC--------CCCCCCCC---CCHHHH--CCCCHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             2587179985277--------67737888---898885--5897677450107988406898688999999999987446


Q ss_pred             --------------HHHH--HHHHCCCEEEECHHHHHHHHH
Q ss_conf             --------------9999--998669889998899999997
Q gi|254780163|r  687 --------------KLEL--QLQEKGISFHFSEEVINWLVS  711 (798)
Q Consensus       687 --------------~l~~--~l~~~~i~l~~~~~~~~~l~~  711 (798)
T Consensus       228 ~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~ea~~~i~~  268 (327)
T pfam00493       228 EEEEIETEDYVDPELLRKYIAYARENIFPKLSDEAREKLVN  268 (327)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             88655568879999999999999852788779899999999