HHsearch alignment for GI: 254780163 and conserved domain: pfam03215
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.25 E-value=0.00017 Score=51.52 Aligned_cols=138 Identities=13% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHH--HHCCCCCCEEEECCCCCHHHHHHHHHHHHH----HCCCCCHH
Q ss_conf 3035654-4258877548611222178999999998--622677874896676411668999999998----54898834
Q gi|254780163|r 185 PALSAYC-VDLTEKVKKGKVDILVGRHEEINRTIQI--LCRRSKNNPLYVGDPGVGKTAIAEGFAKQI----VDGMVPDI 257 (798)
Q Consensus 185 ~~LdkFg-~DLTe~AreGKLDPVIGRd~EI~riiqI--L~RR~KNn~~lvG~~gvGktaive~la~~i----~~~~vp~~ 257 (798)
T Consensus 8 pW~ekyaP~~l~ELAVHKK------KV~eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~ 81 (490)
T pfam03215 8 LWTEKYKPRRRDELAIHKK------KIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEY 81 (490)
T ss_pred CCHHHCCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 6414308887899855354------3999999999985477773189987989988999999999975968998148654
Q ss_pred HHEEEE-EEEEH---HHHHCCCCCCCHHHHHHHHHHHH--H--CCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 520144-55404---67530634312378999999987--2--0389839997361663015544434477788887663
Q gi|254780163|r 258 LLGARI-FSLDM---GNLIAGTRYRGDFEERIKKIVKE--I--ESYANAILYIDEIHTLVGAGSASGISVDASNLLKPAL 329 (798)
Q Consensus 258 l~~~~i-~~ld~---~~l~ag~~~rg~fe~r~~~~~~~--~--~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L 329 (798)
T Consensus 82 ~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~-----d~~~fr~~L~~~L 156 (490)
T pfam03215 82 LHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYS-----DAEKFREVIREVL 156 (490)
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC-----CHHHHHHHHHHHH
T ss_conf 56775022101212345766663777767887622335654457887359999658874423-----6699999999999
Q ss_pred CCCC
Q ss_conf 0266
Q gi|254780163|r 330 SSGA 333 (798)
Q Consensus 330 ~rg~ 333 (798)
T Consensus 157 ~s~~ 160 (490)
T pfam03215 157 QSIW 160 (490)
T ss_pred HHCC
T ss_conf 7089