HHsearch alignment for GI: 254780163 and conserved domain: pfam03215

>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.25  E-value=0.00017  Score=51.52  Aligned_cols=138  Identities=13%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             CCHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHH--HHCCCCCCEEEECCCCCHHHHHHHHHHHHH----HCCCCCHH
Q ss_conf             3035654-4258877548611222178999999998--622677874896676411668999999998----54898834
Q gi|254780163|r  185 PALSAYC-VDLTEKVKKGKVDILVGRHEEINRTIQI--LCRRSKNNPLYVGDPGVGKTAIAEGFAKQI----VDGMVPDI  257 (798)
Q Consensus       185 ~~LdkFg-~DLTe~AreGKLDPVIGRd~EI~riiqI--L~RR~KNn~~lvG~~gvGktaive~la~~i----~~~~vp~~  257 (798)
T Consensus         8 pW~ekyaP~~l~ELAVHKK------KV~eV~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~   81 (490)
T pfam03215         8 LWTEKYKPRRRDELAIHKK------KIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEY   81 (490)
T ss_pred             CCHHHCCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf             6414308887899855354------3999999999985477773189987989988999999999975968998148654


Q ss_pred             HHEEEE-EEEEH---HHHHCCCCCCCHHHHHHHHHHHH--H--CCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             520144-55404---67530634312378999999987--2--0389839997361663015544434477788887663
Q gi|254780163|r  258 LLGARI-FSLDM---GNLIAGTRYRGDFEERIKKIVKE--I--ESYANAILYIDEIHTLVGAGSASGISVDASNLLKPAL  329 (798)
Q Consensus       258 l~~~~i-~~ld~---~~l~ag~~~rg~fe~r~~~~~~~--~--~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L  329 (798)
T Consensus        82 ~~~~~~~~q~~d~~g~~~~~~~S~~~~F~eFLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~-----d~~~fr~~L~~~L  156 (490)
T pfam03215        82 LHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQGGGLKKKLILVEELPNQFYS-----DAEKFREVIREVL  156 (490)
T ss_pred             CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC-----CHHHHHHHHHHHH
T ss_conf             56775022101212345766663777767887622335654457887359999658874423-----6699999999999


Q ss_pred             CCCC
Q ss_conf             0266
Q gi|254780163|r  330 SSGA  333 (798)
Q Consensus       330 ~rg~  333 (798)
T Consensus       157 ~s~~  160 (490)
T pfam03215       157 QSIW  160 (490)
T ss_pred             HHCC
T ss_conf             7089