>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.

Probab=99.58 E-value=1.2e-13 Score=117.13 Aligned_cols=198 Identities=21% Similarity=0.272 Sum_probs=121.7 Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCC Q ss_conf 46653458999999999877520445657874068861432003889999987304773377206886124653011047 Q gi|254780163|r 476 GTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGA 555 (798) Q Consensus 476 ~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGa 555 (798) T Consensus 23 l~e~vGQehl~~~l~~~i~a~----~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~~i~----------- 87 (234) T pfam05496 23 LDEYIGQEKVKENLKIFIEAA----KKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----------- 87 (234) T ss_pred HHHCCCHHHHHHHHHHHHHHH----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCHHHH----------- T ss_conf 666069499999999999988----74277766278878999988899999998408753761426664----------- Q ss_pred CCHHCCCCCCCCCCHHH-HHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCC-----CCCCCEECCCCEEEEEECCCCHH Q ss_conf 80002564443100355-5158517774044550289999999987775021-----77997761254299994242145 Q gi|254780163|r 556 PPGYVGFGQGGILADSV-DQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT-----DQSGKKISFRNVILIMTTNAGAL 629 (798) Q Consensus 556 ppGYvG~~egg~Lte~v-r~~P~sVvl~DEiEKAh~~v~~~llqild~G~lt-----d~~Gr~vdf~n~iii~TsN~G~~ 629 (798) T Consensus 88 --------~~~di~~~l~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtL---IgAT 156 (234) T pfam05496 88 --------KPGDLAAILTNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTL---VGAT 156 (234) T ss_pred --------HHHHHHHHHHHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEE---EEEC T ss_conf --------38999999984589988999665435876887445533461699996367663246526897599---8521 Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHH Q ss_conf 53303689882111488999998728878817768289628899999999999999999999986698899988999999 Q gi|254780163|r 630 EMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWL 709 (798) Q Consensus 630 ~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l 709 (798) T Consensus 157 ----------Te----------~~~l~~pl~sR~~i~~~l~~l~~edl~~il~r~~~~-------l~--i~i~~eal~~I 207 (234) T pfam05496 157 ----------TR----------AGLLTSPLRDRFGIVLRLEFYSVEELEEIVKRSARI-------LG--VEIDEEGAAEI 207 (234) T ss_pred ----------CC----------CCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHHH-------CC--CCCCHHHHHHH T ss_conf ----------56----------664777799762112442468999999999999998-------39--99599999999 Q ss_pred HHCCCCCCCCCHHHHHHHHHHH Q ss_conf 9718981015326799999862 Q gi|254780163|r 710 VSHGYDVKMGARPLERIIKEHV 731 (798) Q Consensus 710 ~~~~~~~~~GAR~l~r~i~~~i 731 (798) T Consensus 208 A~~s~---Gd~R~ALnlLe~v~ 226 (234) T pfam05496 208 ARRSR---GTPRIANRLLRRVR 226 (234) T ss_pred HHHCC---CCHHHHHHHHHHHH T ss_conf 99779---98999989999999

HHsearch alignment for GI: 254780163 and conserved domain: pfam05496