HHsearch alignment for GI: 254780163 and conserved domain: pfam05729

>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.

Probab=96.28  E-value=0.024  Score=36.06  Aligned_cols=106  Identities=18%  Similarity=0.263  Sum_probs=58.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHH----HC----CCCEEEEEHHHHHCC--CCCCHHCCCCCHHCCCCCCCCCCH---HHHHC
Q ss_conf             688614320038899999873----04----773377206886124--653011047800025644431003---55515
Q gi|254780163|r  509 CYVFSGPTGVGKTEISKQLAF----AL----GVQLLRFDMSEYMER--HAVSRLIGAPPGYVGFGQGGILAD---SVDQN  575 (798)
Q Consensus       509 ~flf~GptGvGKTelak~la~----~~----~~~lir~dmsey~e~--~~vs~LiGappGYvG~~egg~Lte---~vr~~  575 (798)
T Consensus         2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~~~~sl~~ll~~~~~~----~~~~~~~~~~~~~~~   77 (165)
T pfam05729         2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADLLFSQWPE----PAAPVSEVWAVILEL   77 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHC
T ss_conf             8999827989899999999999986984369728999995670777668999999987677----457637899999839


Q ss_pred             CC-EEEEECCHHHCCH---------HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCH
Q ss_conf             85-1777404455028---------99999999877750217799776125429999424214
Q gi|254780163|r  576 PY-SVVLLDEIEKSHP---------DVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGA  628 (798)
Q Consensus       576 P~-sVvl~DEiEKAh~---------~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~  628 (798)
T Consensus        78 ~~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~----------~~~lp~~~vliTsRp~~  130 (165)
T pfam05729        78 PERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLR----------KKLLPGASLLLTSRPDA  130 (165)
T ss_pred             CCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHH----------HCCCCCCEEEEEECCCH
T ss_conf             772899964845514443564445779999999984----------15278864999968037