HHsearch alignment for GI: 254780163 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.79 E-value=6.2e-07 Score=69.01 Aligned_cols=104 Identities=21% Similarity=0.333 Sum_probs=79.7
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 17774044550289999999987775021779977612542999942421455330368988211148899999872887
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSP 657 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~p 657 (798)
T Consensus 277 GVLFIDEvHMLDiEcFsfLnralEs~-----------l-aPivI~ATNRG~~~IRGT----d~~sP---------HGiP~ 331 (395)
T pfam06068 277 GVLFIDEVHMLDIECFSFLNRALESE-----------L-APIVILATNRGICTIRGT----DIISP---------HGIPL 331 (395)
T ss_pred CCEEEECCHHCCHHHHHHHHHHHCCC-----------C-CCEEEEEECCCCEEECCC----CCCCC---------CCCCH
T ss_conf 74688500000058998887765056-----------7-876999844652035256----77588---------89987
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCC
Q ss_conf 88177682896288999999999999999999999866988999889999999718981
Q gi|254780163|r 658 EFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDV 716 (798)
Q Consensus 658 eflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~ 716 (798)
T Consensus 332 DlLDRl-lII~T~py~~~ei~~Ii~iRa~~---------E~v~l~~~al~~L~~ig~~~ 380 (395)
T pfam06068 332 DLLDRL-LIITTEPYTREEIKQILEIRAQE---------EGVEISEEALDLLAKIGEET 380 (395)
T ss_pred HHHHHE-EEEECCCCCHHHHHHHHHHHHHH---------HCCCCCHHHHHHHHHHHHHC
T ss_conf 777302-58856889989999999987776---------07877989999999865320