HHsearch alignment for GI: 254780163 and conserved domain: pfam07693
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=97.01 E-value=0.036 Score=34.74 Aligned_cols=124 Identities=19% Similarity=0.371 Sum_probs=68.0
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 17774044550289999999987775021779977612542999942421455330368988211148899999872887
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSP 657 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~p 657 (798)
T Consensus 162 iVviIDDLDRc~p~~~v~~Le~Ik~---------~~d~~n~vfVLa~D------------------~~~v~~al~~~~~~ 214 (301)
T pfam07693 162 IVVIIDDLDRCEPEEAVELLEAVRL---------LFDFPNVVFILAYD------------------EEIIKKAIEHNYGG 214 (301)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH---------HHCCCCEEEEEECC------------------HHHHHHHHHHHCCC
T ss_conf 8999736554887899999999999---------72679818999758------------------99999999987387
Q ss_pred ------HHHCCC-CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCC-CCCCHHHHHHHHH
Q ss_conf ------881776-82896288999999999999999999999866988999889999999718981-0153267999998
Q gi|254780163|r 658 ------EFLNRL-DSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDV-KMGARPLERIIKE 729 (798)
Q Consensus 658 ------eflnRi-d~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~-~~GAR~l~r~i~~ 729 (798)
T Consensus 215 ~~~~~~~YLeKiIq~p~~lP~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nPR~ikR~lN~ 293 (301)
T pfam07693 215 GEIDGQDYLEKIIQLPFKLPPLGLRELRRFLMTLFDALEKGTPSEDRDRGLRADDLNIIL-DSEDKSNINPRELKRLINA 293 (301)
T ss_pred CCCCHHHHHHHHEECEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHE
T ss_conf 874189999854102476799878999999999999985244444320234678999999-7411147999999998733