HHsearch alignment for GI: 254780163 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.

Probab=98.08  E-value=9.1e-06  Score=60.58  Aligned_cols=94  Identities=26%  Similarity=0.415  Sum_probs=65.0

Q ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHH--------CC--CCCCCHHHHHHHHHHHHHC
Q ss_conf             7787489667641166899999999854898834520144554046753--------06--3431237899999998720
Q gi|254780163|r  224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLI--------AG--TRYRGDFEERIKKIVKEIE  293 (798)
Q Consensus       224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~--------ag--~~~rg~fe~r~~~~~~~~~  293 (798)
T Consensus         2 p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~-------~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G--~l~~~v~   72 (168)
T pfam07724         2 PIGSFLFLGPTGVGKTELAKALAELLFGDER-------ALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG--QLTEAVR   72 (168)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCCCCC-------CEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCC--CHHHHHH
T ss_conf             8379998898998999999999999679853-------448855756542569998705899872624265--0789998


Q ss_pred             CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf             389839997361663015544434477788887663026603
Q gi|254780163|r  294 SYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVR  335 (798)
Q Consensus       294 ~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~  335 (798)
T Consensus        73 ~~p~~VillDEIeKa---------~~~V~~~LL~ild~g~~~  105 (168)
T pfam07724        73 RKPYSIVLIDEIEKA---------HPGVQNDLLQILEGGTLT  105 (168)
T ss_pred             HCCCCEEEEHHHHHH---------CHHHHHHHHHHCCCCCEE
T ss_conf             389848986577665---------899999999870587063