HHsearch alignment for GI: 254780163 and conserved domain: pfam07728
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.64 E-value=2.7e-08 Score=78.72 Aligned_cols=116 Identities=24% Similarity=0.267 Sum_probs=65.5
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCC---CCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 748966764116689999999985489883452014455404675306343---12378999999987203898399973
Q gi|254780163|r 227 NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRY---RGDFEERIKKIVKEIESYANAILYID 303 (798)
Q Consensus 227 n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~---rg~fe~r~~~~~~~~~~~~~~ilfid 303 (798)
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~--~~i~~~-~~~~~~dl~G~~~~~~~~~~~~~---g~l~~a~~~g-~vl~lD 73 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPV--FYVQLT-RDTTEEDLKGRRNIANGTTSWVD---GPLVRAAREG-EIAVLD 73 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCC--HHHCCC-CCCCHHHCCCCEECCCCCEEEEC---CHHHCCCCCC-CEEEEC
T ss_conf 9899989975699999999998079831--112146-55652220573423799357815---5141010128-689963
Q ss_pred CHHHHHCCCCCCCCCCCHHHHHHHHHCCCC--------------------EEEEEECCHHHHHHHHHCCHHHHHHC
Q ss_conf 616630155444344777888876630266--------------------03887304899999852011143200
Q gi|254780163|r 304 EIHTLVGAGSASGISVDASNLLKPALSSGA--------------------VRCIGSTTYSEYRQFFEKDKALVRRF 359 (798)
Q Consensus 304 eih~ligag~~~g~~~d~an~lkP~L~rg~--------------------~~~IgatT~~ey~~~~e~d~al~rrF 359 (798)
T Consensus 74 Ein~a---------~~~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~-~~g~~~l~~Al~~RF 139 (139)
T pfam07728 74 EINRA---------NPDVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPL-DRGLNELSPALRSRF 139 (139)
T ss_pred CHHHC---------CHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCC-CCCCCCCCHHHHCCC
T ss_conf 43448---------9999999999974896983689727336666789996999975896-547800998997509