HHsearch alignment for GI: 254780163 and conserved domain: smart00763
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.01 E-value=0.00014 Score=51.97 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=65.9
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCC-CCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHH-HHC
Q ss_conf 17774044550289999999987775021-7799776125429999424214553303689882111488999998-728
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILT-DQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALR-NFL 655 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~lt-d~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~-~~f 655 (798)
T Consensus 238 Gi~ef~E~~K~~~~~L~~LL~~tqE~~vk~~~~~~~~~~d-~viia~sNe~-------------------E~~~f~~~~~ 297 (361)
T smart00763 238 GILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPID-GLIIAHSNES-------------------EWQRFKSNKK 297 (361)
T ss_pred CCEEHHHHHHCCHHHHHHHHCCCCCCEECCCCCCCCCCCC-EEEEECCCHH-------------------HHHHHHCCCC
T ss_conf 6000487751759999998420103604178865653245-1588249859-------------------9987644841
Q ss_pred CHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf 8788177682896288999999999999999999999866988999889999999
Q gi|254780163|r 656 SPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLV 710 (798)
Q Consensus 656 ~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~ 710 (798)
T Consensus 298 ~ea~~dR~~~i~vPY~l~~~~E~kIY~k~l~~~------~~~~~h~aPhtl~~aa 346 (361)
T smart00763 298 NEALLDRIIKVKVPYCLRVSEEAQIYEKLLRNS------DLTEAHIAPHTLEMAA 346 (361)
T ss_pred CHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCC------CCCCCCCCCCHHHHHH
T ss_conf 055550279986874167388999999995656------5668772986899999