RPSBLAST alignment for GI: 254780163 and conserved domain: TIGR03345
>gnl|CDD|163222 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. Length = 852
Score = 344 bits (884), Expect = 7e-95
Identities = 162/439 (36%), Positives = 231/439 (52%), Gaps = 60/439 (13%)
Query: 10 KVLHQALVLANERNHEYATLEHLLLALID--DSDAAIVMLSCNVDLKVLKNNLLNYIDND 67
+ L QA L R H LEH LLAL+D DSD A ++ VDL LK +L +D
Sbjct: 7 RALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDK- 65
Query: 68 SSNKLKNGFRVECKPTSSFQ----RVVQRAVLHVQST--GRGIVTGANILVALFSEPDSH 121
T F ++Q A + S G G + ++L+AL ++P+
Sbjct: 66 --------LPRGNTRTPVFSPHLVELLQEA-WLLASLELGDGRIRSGHLLLALLTDPE-- 114
Query: 122 ATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDG--------------SSAGSD 167
L + IS E A K++ + +SA +
Sbjct: 115 -----------LRRLLGSIS------PELA----KIDREALREALPALVEGSAEASAAAA 153
Query: 168 GEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNN 227
G AL Y DLT + ++GK+D ++GR +EI + I IL RR +NN
Sbjct: 154 DAGPAAAAAGAAGT---SALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNN 210
Query: 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKK 287
P+ G+ GVGKTA+ EG A +I G VP L R+ SLD+G L AG +G+FE R+K
Sbjct: 211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKS 270
Query: 288 IVKEI-ESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYR 346
++ E+ S IL+IDE HTL+GAG +G DA+NLLKPAL+ G +R I +TT++EY+
Sbjct: 271 VIDEVKASPQPIILFIDEAHTLIGAGGQAGQG-DAANLLKPALARGELRTIAATTWAEYK 329
Query: 347 QFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRH 406
++FEKD AL RRFQ + V EP E AI +++G+ P E+HH + EA+ AAV+LS R+
Sbjct: 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389
Query: 407 FTSRKLPDKAIDVIDEAGA 425
R+LPDKA+ ++D A A
Sbjct: 390 IPGRQLPDKAVSLLDTACA 408