RPSBLAST alignment for GI: 254780163 and conserved domain: TIGR03345

>gnl|CDD|163222 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. Length = 852
 Score =  344 bits (884), Expect = 7e-95
 Identities = 162/439 (36%), Positives = 231/439 (52%), Gaps = 60/439 (13%)

Query: 10  KVLHQALVLANERNHEYATLEHLLLALID--DSDAAIVMLSCNVDLKVLKNNLLNYIDND 67
           + L QA  L   R H    LEH LLAL+D  DSD A ++    VDL  LK +L   +D  
Sbjct: 7   RALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDK- 65

Query: 68  SSNKLKNGFRVECKPTSSFQ----RVVQRAVLHVQST--GRGIVTGANILVALFSEPDSH 121
                          T  F      ++Q A   + S   G G +   ++L+AL ++P+  
Sbjct: 66  --------LPRGNTRTPVFSPHLVELLQEA-WLLASLELGDGRIRSGHLLLALLTDPE-- 114

Query: 122 ATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDG--------------SSAGSD 167
                      L   +  IS       E A    K++ +               +SA + 
Sbjct: 115 -----------LRRLLGSIS------PELA----KIDREALREALPALVEGSAEASAAAA 153

Query: 168 GEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNN 227
             G               AL  Y  DLT + ++GK+D ++GR +EI + I IL RR +NN
Sbjct: 154 DAGPAAAAAGAAGT---SALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNN 210

Query: 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKK 287
           P+  G+ GVGKTA+ EG A +I  G VP  L   R+ SLD+G L AG   +G+FE R+K 
Sbjct: 211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKS 270

Query: 288 IVKEI-ESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYR 346
           ++ E+  S    IL+IDE HTL+GAG  +G   DA+NLLKPAL+ G +R I +TT++EY+
Sbjct: 271 VIDEVKASPQPIILFIDEAHTLIGAGGQAGQG-DAANLLKPALARGELRTIAATTWAEYK 329

Query: 347 QFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRH 406
           ++FEKD AL RRFQ + V EP  E AI +++G+ P  E+HH +    EA+ AAV+LS R+
Sbjct: 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389

Query: 407 FTSRKLPDKAIDVIDEAGA 425
              R+LPDKA+ ++D A A
Sbjct: 390 IPGRQLPDKAVSLLDTACA 408