RPSBLAST alignment for GI: 254780163 and conserved domain: TIGR03345

>gnl|CDD|163222 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. Length = 852

 Score =  266 bits (683), Expect = 1e-71
 Identities = 111/289 (38%), Positives = 178/289 (61%), Gaps = 13/289 (4%)

Query: 462 RDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKT 521
           RD+   + +L   L   V GQ+ A++ ++  I+ ARAGL DP KP+G ++  GP+GVGKT
Sbjct: 551 RDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKT 610

Query: 522 EISKQLAFAL--GVQ-LLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYS 578
           E +  LA  L  G Q L+  +MSE+ E H VSRL G+PPGYVG+G+GG+L ++V + PYS
Sbjct: 611 ETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYS 670

Query: 579 VVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGF 638
           VVLLDE+EK+HPDVL +  Q+ D G++ D  G++I F+N ++++T+NAG+  +       
Sbjct: 671 VVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCA-- 728

Query: 639 GSSRNDDAD--KEALR----NFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQL 692
                 D +   EALR        P FL R+ ++IP+ PL  D++  +V   + ++  +L
Sbjct: 729 DPETAPDPEALLEALRPELLKVFKPAFLGRM-TVIPYLPLDDDVLAAIVRLKLDRIARRL 787

Query: 693 QEK-GISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEIL 740
           +E  G    +SE ++  +V+   +V+ GAR ++ I+ + +   L+ +IL
Sbjct: 788 KENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQIL 836