RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease
ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62]
(798 letters)
>gnl|CDD|30888 COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 786
Score = 815 bits (2107), Expect = 0.0
Identities = 359/811 (44%), Positives = 493/811 (60%), Gaps = 89/811 (10%)
Query: 4 FSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNLLNY 63
+E +K L A LA R HEY T EHLLLAL+D ++ C +DL L+ L +
Sbjct: 2 LTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQELEEF 61
Query: 64 IDNDSSNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDSHAT 123
ID + +RV++RA L QS G V+ ++L+AL +EP+S A
Sbjct: 62 IDKLPK------VLGSPYLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAA 115
Query: 124 YFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGEGFVNDYQAKTDLNL 183
Y L++ +T D I + VD +A D
Sbjct: 116 YILKKLGVTRKDVEELI----------EELRGGNEVDSKNAEEDQ--------------- 150
Query: 184 FPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAE 243
AL Y DLTE ++GK+D ++GR EEI RTIQIL RR+KNNP+ VG+PGVGKTAI E
Sbjct: 151 -DALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVE 209
Query: 244 GFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYID 303
G A++IV+G VP+ L RI+SLD+G+L+AG +YRG+FEER+K ++KE+E N IL+ID
Sbjct: 210 GLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFID 269
Query: 304 EIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKID 363
EIHT+VGAG+ G ++DA+NLLKPAL+ G +RCIG+TT EYR++ EKD AL RRFQK+
Sbjct: 270 EIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVL 329
Query: 364 VSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423
V EPS+ED I I++G+K +E HH +R + EA+ AAV LS R+ R LPDKAID++DEA
Sbjct: 330 VDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEA 389
Query: 424 GAS---QILQPLS------------------------KRRKFI----------------- 439
GA +I +P K +K I
Sbjct: 390 GARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKE 449
Query: 440 -----TEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIK 494
E DI + +A I D+ L NLE+ L V GQ+EA++ +S +I+
Sbjct: 450 LEAEVDEDDIAEVVARWTG-IPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIR 508
Query: 495 IARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALG---VQLLRFDMSEYMERHAVSR 551
ARAGL DPN+PIG ++F GPTGVGKTE++K LA AL L+R DMSEYME+H+VSR
Sbjct: 509 RARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSR 568
Query: 552 LIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGK 611
LIGAPPGYVG+ +GG L ++V + PYSV+LLDEIEK+HPDV N+LLQ++D G LTD G+
Sbjct: 569 LIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGR 628
Query: 612 KISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADK---EALRNFLSPEFLNRLDSIIP 668
+ FRN I+IMT+NAG+ E+ + G + + + E L+ PEFLNR+D IIP
Sbjct: 629 TVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIP 688
Query: 669 FFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIK 728
F PLS +++ ++V + +L +L E+GI+ S+E ++L GYD + GARPL R I+
Sbjct: 689 FNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQ 748
Query: 729 EHVKVPLADEILFGKLKKGGGVVKVSLNPDK 759
+ ++ PLADEILFGK++ GG VKV ++ +K
Sbjct: 749 QEIEDPLADEILFGKIED-GGTVKVDVDDEK 778
>gnl|CDD|177027 CHL00095, clpC, Clp protease ATP binding subunit.
Length = 821
Score = 625 bits (1613), Expect = e-179
Identities = 315/844 (37%), Positives = 470/844 (55%), Gaps = 107/844 (12%)
Query: 4 FSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSD--AAIVMLSCNVDLKVLKNNLL 61
F+E KV+ + A H + E +LL LI + AA + S V LK + +
Sbjct: 5 FTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVE 64
Query: 62 NYIDNDSSNKLKNGF-RVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDS 120
I GF VE T +RV++ ++ + G + ++L+AL E +
Sbjct: 65 KII------GRGTGFVAVEIPFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEG 118
Query: 121 HATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGEGFVNDYQAKTD 180
A L+ V+ R N G E + Q+++
Sbjct: 119 VAARVLE------NLGVDLSK----IRSLILNL----------IGEIIEAILGAEQSRSK 158
Query: 181 LNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTA 240
P L + +LT++ G +D ++GR +EI R IQIL RR+KNNP+ +G+PGVGKTA
Sbjct: 159 T---PTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTA 215
Query: 241 IAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAIL 300
IAEG A++IV+ VPDIL + +LD+G L+AGT+YRG+FEER+K+I EI+ N IL
Sbjct: 216 IAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIIL 275
Query: 301 YIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQ 360
IDE+HTL+GAG+A G ++DA+N+LKPAL+ G ++CIG+TT EYR+ EKD AL RRFQ
Sbjct: 276 VIDEVHTLIGAGAAEG-AIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQ 334
Query: 361 KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420
+ V EPS+E+ IEI+ G++ +E+HH L S +A+ AA +LS ++ R LPDKAID++
Sbjct: 335 PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLL 394
Query: 421 DEAGASQIL---------QPLSKR-RKFITEKD--------------------IKKTIAS 450
DEAG+ L + L K R+ + +KD ++ IA+
Sbjct: 395 DEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAA 454
Query: 451 MNRSIHTTSFSRDDDSVLS----------------------------NLEKNLGTVVYGQ 482
+ +S T R + V++ ++E+ L + GQ
Sbjct: 455 IIQSKKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQ 514
Query: 483 EEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA---FALGVQLLRFD 539
+EA+ +S +I+ AR GL +PN+PI ++FSGPTGVGKTE++K LA F ++R D
Sbjct: 515 DEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD 574
Query: 540 MSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQI 599
MSEYME+H VS+LIG+PPGYVG+ +GG L ++V + PY+VVL DEIEK+HPD+ N+LLQI
Sbjct: 575 MSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQI 634
Query: 600 MDYGILTDQSGKKISFRNVILIMTTNAGA--LEMSKARIGFGSSRNDDADK--------- 648
+D G LTD G+ I F+N ++IMT+N G+ +E + +GF S N ++K
Sbjct: 635 LDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLV 694
Query: 649 -EALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVIN 707
E L+ F PEFLNRLD II F L+ + + ++ + L +L E+GI +E +
Sbjct: 695 NEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKT 754
Query: 708 WLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKSASSPIFF 767
L+ GY+ GARPL R I ++ PLA+E+L K+K G ++ V +N +K +
Sbjct: 755 LLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIII-VDVNDEKEVKILLIN 813
Query: 768 EIEN 771
+
Sbjct: 814 KDNL 817
>gnl|CDD|36269 KOG1051, KOG1051, KOG1051, Chaperone HSP104 and related
ATP-dependent Clp proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 898
Score = 241 bits (616), Expect = 5e-64
Identities = 147/440 (33%), Positives = 218/440 (49%), Gaps = 39/440 (8%)
Query: 4 FSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVML---SCNVDLKVLKNNL 60
+E VL QA+ A R H T H+ L+ + S + + L+
Sbjct: 12 LTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCF 71
Query: 61 LNYIDNDSSNKL-KNGFRVECKP-TSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEP 118
N S N+L + ++ +R + + V + L
Sbjct: 72 -----NVSLNRLPTSYGPPVSNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILD 126
Query: 119 DSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGEGFVNDYQAK 178
D + ++E F S + E +
Sbjct: 127 DPSVSRVMRE--------AGFSSSAVKSAVE--QPVGQFRSPSRGPLWP----------- 165
Query: 179 TDLNLFPALSAYCVDLTEKVKKGKVDILVGRH-EEINRTIQILCRRSKNNPLYVGDPGVG 237
L Y DLT + ++GK+D ++GRH EEI R I+IL R++KNNP+ VG+PGVG
Sbjct: 166 -----LLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVG 220
Query: 238 KTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYA- 296
KTAI EG A++I G VP+ L ++ +LD G+L+AG + RG+FEER+K+++KE+ES
Sbjct: 221 KTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGG 280
Query: 297 NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALV 356
IL++ E+H LVG+GS G ++DA+NLLKP L+ G + CIG+TT YR+ EKD AL
Sbjct: 281 GVILFLGELHWLVGSGSNYG-AIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALE 339
Query: 357 RRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKA 416
RR+Q + V PS+E+ I+ G+ +E HH +R S E++ +A QLS R+ T LPD A
Sbjct: 340 RRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCA 399
Query: 417 IDVIDEAGASQILQPLSKRR 436
ID+ DEA A Q S
Sbjct: 400 IDLEDEAAALVKSQAESLPP 419
Score = 224 bits (571), Expect = 9e-59
Identities = 126/347 (36%), Positives = 190/347 (54%), Gaps = 23/347 (6%)
Query: 413 PDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLE 472
D + G E DI + + S I + + L LE
Sbjct: 499 NDYTRETDLRYGRIPDELSEKSNDNQGGESDISE-VVSRWTGIPVDRLAEAEAERLKKLE 557
Query: 473 KNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA---F 529
+ L V GQ+EA+ ++++I+ +RAGL DPN P ++F GP GVGKTE++K LA F
Sbjct: 558 ERLHERVIGQDEAVAAIAAAIRRSRAGLKDPN-PDAWFLFLGPDGVGKTELAKALAEYVF 616
Query: 530 ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSH 589
+R DMSE+ E VS+LIG+PPGYVG +GG L ++V + PYSVVL +EIEK+H
Sbjct: 617 GSEENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673
Query: 590 PDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE-MSKARIGFGSSRND---- 644
PDVLNILLQ++D G LTD G+++ F+N I IMT+N G+ + A + D
Sbjct: 674 PDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRG 733
Query: 645 ----------DADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQE 694
DA + + F EFLNR+D + PL D + ++V+K + ++E +L+E
Sbjct: 734 SYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEE 793
Query: 695 KGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVPLADEILF 741
+ + ++ V + ++ GYD GARP++R I+E + LA+ +L
Sbjct: 794 RELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALLG 840
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases..
Length = 151
Score = 83.3 bits (206), Expect = 2e-16
Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 14/158 (8%)
Query: 207 VGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSL 266
VG+ E I + L N L G PG GKT +A A ++ GA L
Sbjct: 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-------FRPGAPFLYL 53
Query: 267 DMGNLIAGTRYRGDFEERIKKIVKEIESYA-NAILYIDEIHTLVGAGSASGISVDASNLL 325
+ +L+ G F + +++ E+ A +L+IDEI +L + A + L
Sbjct: 54 NASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL--SRGAQNALLRVLETL 111
Query: 326 KPAL-SSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKI 362
VR IG+T D+AL R
Sbjct: 112 NDLRIDRENVRVIGATNRPLLGDL---DRALYDRLDIR 146
Score = 69.9 bits (171), Expect = 3e-12
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 480 YGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA---FALGVQLL 536
GQEEAI+ L +++ P + GP G GKT +++ +A F G L
Sbjct: 1 VGQEEAIEALREALE---------LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFL 51
Query: 537 RFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNIL 596
+ S+ +E V+ L G + F ++ V+ +DEI+ N L
Sbjct: 52 YLNASDLLEGLVVAELFGHFLVRLLFEL-------AEKAKPGVLFIDEIDSLSRGAQNAL 104
Query: 597 LQIMDYGILTDQSGKKISFRNVILIMTTN 625
L++++ +I NV +I TN
Sbjct: 105 LRVLETLNDL-----RIDRENVRVIGATN 128
>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 70.7 bits (174), Expect = 1e-12
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 25/142 (17%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKI 288
L G PG GKT +A+ AK+ LGA + L++ Y G+ E+R++++
Sbjct: 2 LLYGPPGTGKTTLAKAVAKE----------LGAPFIEISGSELVSK--YVGESEKRLREL 49
Query: 289 VKEIESYANAILYIDEIHTLVGAGSASGISV--DASNLLKPAL-----SSGAVRCIGSTT 341
+ + A +++IDEI L G+ + G S N L L S V I +T
Sbjct: 50 FEAAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATN 109
Query: 342 YSEYRQFFEKDKALVR-RFQKI 362
+ + D AL+R RF +I
Sbjct: 110 RPD-----KLDPALLRGRFDRI 126
Score = 55.7 bits (135), Expect = 5e-08
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 29/125 (23%)
Query: 512 FSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADS 571
GP G GKT ++K +A LG + SE VS+ +G + + +
Sbjct: 3 LYGPPGTGKTTLAKAVAKELGAPFIEISGSE-----LVSKYVGESEKRL----RELFEAA 53
Query: 572 VDQNPYSVVLLDEIEKSHP-----------DVLNILLQIMDYGILTDQSGKKISFRNVIL 620
P V+ +DEI+ V+N LL +D G S VI+
Sbjct: 54 KKLAP-CVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELD--------GFTSSLSKVIV 104
Query: 621 IMTTN 625
I TN
Sbjct: 105 IAATN 109
>gnl|CDD|37381 KOG2170, KOG2170, KOG2170, ATPase of the AAA+ superfamily [General
function prediction only].
Length = 344
Score = 67.6 bits (165), Expect = 1e-11
Identities = 64/264 (24%), Positives = 107/264 (40%), Gaps = 35/264 (13%)
Query: 468 LSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQL 527
L LEK+L ++GQ A + + +++K A +P KP+ F G TG GK +++ +
Sbjct: 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWAN-PNPRKPL-VLSFHGWTGTGKNYVAEII 130
Query: 528 AFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI---LADSVDQNPYSVVLLDE 584
A L LR S ++ H V+ L + + + + +V S+ + DE
Sbjct: 131 AENLYRGGLR---SPFV-HHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDE 186
Query: 585 IEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGF---GSS 641
++K P +L++L +DY + FR I I +NAG E+++ + G
Sbjct: 187 VDKLPPGLLDVLKPFLDYYPQVS----GVDFRKAIFIFLSNAGGSEIARIALENARNGKP 242
Query: 642 RNDDADKEALRNFLSPEF--------------LNRLDSIIPFFPLSSDIIRQVVHKFIMK 687
R K + F N +D IPF PL +R + +
Sbjct: 243 REQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCI-----R 297
Query: 688 LELQLQEKGISFHFSEEVINWLVS 711
EL+ + F E V N L
Sbjct: 298 AELRKRGLAPDQDFVERVANSLSF 321
>gnl|CDD|31058 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 63.6 bits (154), Expect = 2e-10
Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 25/250 (10%)
Query: 468 LSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQL 527
L + L VV G EE I+ ++ L GP GVGKT +++ L
Sbjct: 15 LGKIRSELEKVVVGDEEVIELALLALLAGGHVL-----------LEGPPGVGKTLLARAL 63
Query: 528 AFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEK 587
A ALG+ +R + + + + G+ + + ++LLDEI +
Sbjct: 64 ARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123
Query: 588 SHPDVLNILLQIMDYGILTDQSGKKISFRN-VILIMTTNAGALEMSKARIGFGSSRNDDA 646
+ P+V N LL+ ++ +T I I+I T N G E G+ +A
Sbjct: 124 APPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYE--------GTYPLPEA 175
Query: 647 --DKEALRNFLS-PEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLE--LQLQEKGISFHF 701
D+ LR ++ P+ I+ ++ + + K ++ E L+LQ++
Sbjct: 176 LLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPV 235
Query: 702 SEEVINWLVS 711
S+EVI+++V+
Sbjct: 236 SDEVIDYIVT 245
Score = 41.6 bits (97), Expect = 8e-04
Identities = 50/236 (21%), Positives = 75/236 (31%), Gaps = 31/236 (13%)
Query: 204 DILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI 263
++VG E I + L + + L G PGVGKT +A A+ + I +
Sbjct: 24 KVVVGDEEVIELAL--LALLAGGHVLLEGPPGVGKTLLARALARAL-GLPFVRIQCTPDL 80
Query: 264 FSLDM-GNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDAS 322
D+ G E R + + IL +DEI+ +
Sbjct: 81 LPSDLLGTYAYAALLLEPGEFRFVP--GPLFAAVRVILLLDEINR---------APPEVQ 129
Query: 323 NLLKPALSSGAVRCIGSTTYSEYRQFF--------------EKDKALVRRFQ-KIDVSEP 367
N L AL V G TT F +AL+ RF +I V P
Sbjct: 130 NALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYP 189
Query: 368 SIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQL-SVRHFTSRKLPDKAIDVIDE 422
E+ I+ +E K + L + + D+ ID I
Sbjct: 190 DSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVT 245
>gnl|CDD|35949 KOG0730, KOG0730, KOG0730, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 693
Score = 53.4 bits (128), Expect = 2e-07
Identities = 108/519 (20%), Positives = 174/519 (33%), Gaps = 128/519 (24%)
Query: 209 RHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDM 268
RH + ++I I + L G PG GKT + A + GA +F ++
Sbjct: 205 RHPALFKSIGI---KPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLING 251
Query: 269 GNLIAGTRYRGDFEERIKKIVKEIESYAN-AILYIDEIHTLVG-----AGSASGISVDAS 322
LI+ + G+ E ++K E + +I++IDE+ L S +
Sbjct: 252 PELISK--FPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLL 309
Query: 323 NLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVR-RF-QKIDVSEPSIEDAIEIVK--G 378
LL V + +T + D AL R RF +++++ P + ++I++
Sbjct: 310 TLLDGLKPDAKVIVLAATNRPD-----SLDPALRRGRFDREVEIGIPGSDGRLDILRVLT 364
Query: 379 IKPYFEEHHQLRYSKE-----AIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLS 433
K L L + + + + S
Sbjct: 365 KKMNLLSDVDLEDIAVSTHGYVGADLAALCREA-SLQATRRTLEIFQEALMGIRP----S 419
Query: 434 KRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSI 493
R+ + E S+ DD L L++ L Q+ L
Sbjct: 420 ALREILVEMP-------------NVSW--DDIGGLEELKREL------QQAVEWPLKHPE 458
Query: 494 KIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLI 553
K AR G+S P + GP G GKT ++K LA G+ L E +
Sbjct: 459 KFARFGISPPKGVL----LYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK------- 507
Query: 554 GAPPGYVGFGQGGI--LADSVDQNPYSVVLLDEIEKSHPD-----------VLNILLQIM 600
YVG + I + Q ++ DEI+ VL+ LL M
Sbjct: 508 -----YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEM 562
Query: 601 DYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL 660
D G+ + NV++I TN R D D LR
Sbjct: 563 D-GLEALK--------NVLVIAATN----------------RPDMIDPALLRP------- 590
Query: 661 NRLDSIIPFFPLSS-----DIIRQVVHKFIMKLELQLQE 694
RLD II + PL +I++Q K ++ L+E
Sbjct: 591 GRLDRII-YVPLPDLEARLEILKQCAKKMPFSEDVDLEE 628
Score = 29.1 bits (65), Expect = 5.0
Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 37/219 (16%)
Query: 471 LEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFA 530
L++ L + E ++ + I G+ P + GP G GKT + + +A
Sbjct: 189 LKRQLSVIRELVELPLRHPALFKSI---GIKPPRGLL----LYGPPGTGKTFLVRAVANE 241
Query: 531 LGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHP 590
G L + E LI PG A+++ S++ +DE++ P
Sbjct: 242 YGAFLFLINGPE---------LISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCP 292
Query: 591 DVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEA 650
+ R V ++T G +K I ++ D+ A
Sbjct: 293 KREGA---------------DDVESRVVSQLLTLLDGLKPDAKV-IVLAATNRPDSLDPA 336
Query: 651 LRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLE 689
LR F ++ IP DI+R V M L
Sbjct: 337 LRR---GRFDREVEIGIPGSDGRLDILR--VLTKKMNLL 370
>gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 52.5 bits (125), Expect = 5e-07
Identities = 90/485 (18%), Positives = 158/485 (32%), Gaps = 96/485 (19%)
Query: 277 YRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRC 336
Y G+ E R++++ +E E A +I++IDEI L S+ V
Sbjct: 57 YVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEV----------------- 99
Query: 337 IGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAI 396
Q L +R Q I + + D ++ K F+ ++ EA
Sbjct: 100 ----ERRVVAQLLALMDGL-KRGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAG 154
Query: 397 RAAVQLSVRHFTSRKLPDKAIDVIDE------AGASQILQPLSKRRKFITEKDIKKTIA- 449
R + P + A + + + R + + I
Sbjct: 155 RLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGV 214
Query: 450 SMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSI----KIARAGLSDPNK 505
+ + VL E + G EEA ++L +I K +
Sbjct: 215 TEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLR 274
Query: 506 PIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQG 565
P + GP G GKT ++K +A + + SE + S+ +G +
Sbjct: 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL-----SKWVGESEKNI----- 324
Query: 566 GILADSVDQNPYSVVLLDEIEK-----------SHPDVLNILLQIMDYGILTDQSGKKIS 614
L + + S++ +DEI+ S V+ LL +D GI
Sbjct: 325 RELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELD-GIE--------K 375
Query: 615 FRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSS 674
V++I TN R DD D LR R D +I + PL
Sbjct: 376 AEGVLVIAATN----------------RPDDLDPALLRP-------GRFDRLI-YVPLPD 411
Query: 675 DIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKVP 734
R I K+ L+ ++ +E+V ++ + GA + +++E
Sbjct: 412 LEERLE----IFKIHLRDKKP----PLAEDVDLEELAEITEGYSGAD-IAALVREAALEA 462
Query: 735 LADEI 739
L +
Sbjct: 463 LREAR 467
>gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 51.0 bits (122), Expect = 1e-06
Identities = 77/319 (24%), Positives = 124/319 (38%), Gaps = 71/319 (22%)
Query: 471 LEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFS------GPTGVGKTEIS 524
++ +L V GQE+A K LS ++ L++ + GPTG GKT ++
Sbjct: 55 IKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLA 114
Query: 525 KQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGIL------AD-SVDQNPY 577
+ LA L V D + E GYVG IL AD V++
Sbjct: 115 QTLAKILNVPFAIADATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAER 163
Query: 578 SVVLLDEIEK--------------SHPDVLNILLQIMDYGI--LTDQSGKKISFRNVILI 621
++ +DEI+K S V LL+I++ + + Q G+K + I +
Sbjct: 164 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQV 223
Query: 622 MTTN-----AGALE---------MSKARIGFGSSRNDDADKEALRNFLS----------- 656
T+N GA + K IGFG+ + K+ L
Sbjct: 224 DTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFG 283
Query: 657 --PEFLNRLDSIIPFFPLSSDIIRQVVHK----FIMKLELQLQEKGISFHFSEEVINWLV 710
PEF+ RL I L D + Q++ + + + + + G+ F+EE + +
Sbjct: 284 LIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIA 343
Query: 711 SHGYDVKMGARPLERIIKE 729
+ K GAR L II+E
Sbjct: 344 KKAIERKTGARGLRSIIEE 362
Score = 29.0 bits (65), Expect = 6.0
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG-DFE 282
SK+N L +G G GKT +A+ AK I++ VP F++ + Y G D E
Sbjct: 96 SKSNILLIGPTGSGKTLLAQTLAK-ILN--VP--------FAIADATTLTEAGYVGEDVE 144
Query: 283 ERIKKIVK----EIESYANAILYIDEIHTLVGAGSASGISVDAS 322
+ K+++ ++E I+YIDEI + I+ D S
Sbjct: 145 NILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVS 188
>gnl|CDD|145814 pfam02861, Clp_N, Clp amino terminal domain. This short domain
is found in one or two copies at the amino terminus of
ClpA and ClpB proteins from bacteria and eukaryotes.
The function of these domains is uncertain but they may
form a protein binding site.
Length = 53
Score = 48.7 bits (117), Expect = 6e-06
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 15 ALVLANERNHEYATLEHLLLALIDDSD--AAIVMLSCNVDLKVLKNNLLNYID 65
A LA E H+Y EHLLLAL+++ D AA ++ VDL L+ + +
Sbjct: 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEKLLG 53
>gnl|CDD|37215 KOG2004, KOG2004, KOG2004, Mitochondrial ATP-dependent protease
PIM1/LON [Posttranslational modification, protein
turnover, chaperones].
Length = 906
Score = 46.9 bits (111), Expect = 2e-05
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 506 PIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQG 565
I C F GP GVGKT I+K +A AL + RF + + V+ + G YVG G
Sbjct: 439 KILC--FVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTD---VAEIKGHRRTYVGAMPG 493
Query: 566 GI---LADSVDQNPYSVVLLDEIEK----SHPDVLNILLQIMD 601
I L +NP ++L+DE++K D + LL+++D
Sbjct: 494 KIIQCLKKVKTENP--LILIDEVDKLGSGHQGDPASALLELLD 534
Score = 32.2 bits (73), Expect = 0.63
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 32/120 (26%)
Query: 196 EKVKKGKVD-ILVGRHEEINRTIQ--ILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDG 252
E VK+ ++ I VG+ + ++Q ILC +VG PGVGKT+IA+ A+
Sbjct: 417 EDVKERILEFIAVGK---LRGSVQGKILC--------FVGPPGVGKTSIAKSIARA---- 461
Query: 253 MVPDILLGARIFSLDMGNL-----IAGTR--YRGDFEERIKKIVKEIESYANAILYIDEI 305
L + F +G + I G R Y G +I + +K++++ N ++ IDE+
Sbjct: 462 ------LNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT-ENPLILIDEV 514
>gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 44.6 bits (105), Expect = 1e-04
Identities = 56/271 (20%), Positives = 111/271 (40%), Gaps = 39/271 (14%)
Query: 192 VDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKN----------NPLYVGDPGVGKTAI 241
+ E + +D ++G EE R +++ +N N L+ G PG GKT +
Sbjct: 109 EEDREIISDITLDDVIG-QEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMM 167
Query: 242 AEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILY 301
A+ A + VP +L+ A LI + GD RI ++ + A I++
Sbjct: 168 AKALANEA---KVPLLLVKA-------TELIG--EHVGDGARRIHELYERARKAAPCIVF 215
Query: 302 IDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTTYSEYRQFFEKDKALVRRF 359
IDE+ + + D S ++ L+ G G T + + D A+ RF
Sbjct: 216 IDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRF 275
Query: 360 Q-KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAID 418
+ +I+ P+ E+ +EI L Y + V +R+ ++ D
Sbjct: 276 EEEIEFKLPNDEERLEI-------------LEYYAKKFPLPVDADLRYLAAKTKGMSGRD 322
Query: 419 VIDEAGASQILQPLSKRRKFITEKDIKKTIA 449
+ ++ + + + +++ R+ + +DI+K +
Sbjct: 323 IKEKVLKTALHRAIAEDREKVEREDIEKALK 353
Score = 34.9 bits (80), Expect = 0.082
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 46/187 (24%)
Query: 407 FTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDS 466
F +R PD A VI + + + T ++ + I S + DD
Sbjct: 73 FDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLETPREEDREIIS--------DITLDD-- 122
Query: 467 VLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNK-----PIGCYVFSGPTGVGKT 521
V GQEEA +K ++ L +P + P +F GP G GKT
Sbjct: 123 ------------VIGQEEAKRKCRLIMEY----LENPERFGDWAPKNV-LFYGPPGTGKT 165
Query: 522 EISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI--LADSVDQNPYSV 579
++K LA V LL +E LIG +VG G I L + + +
Sbjct: 166 MMAKALANEAKVPLLLVKATE---------LIGE---HVGDGARRIHELYERARKAAPCI 213
Query: 580 VLLDEIE 586
V +DE++
Sbjct: 214 VFIDELD 220
>gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 43.2 bits (102), Expect = 2e-04
Identities = 50/153 (32%), Positives = 69/153 (45%), Gaps = 39/153 (25%)
Query: 468 LSNLEKNLGTVVYGQEE---------AIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGV 518
L EK L YG E+ A++KL+ +K PI C V GP GV
Sbjct: 314 LKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLK----------GPILCLV--GPPGV 361
Query: 519 GKTEISKQLAFALGVQLLRF------DMSEYMERHAVSRLIGAPPGYVGFGQGGILADSV 572
GKT + K +A ALG + +R D +E R IGA PG + G + +
Sbjct: 362 GKTSLGKSIAKALGRKFVRISLGGVRDEAEI--RGHRRTYIGAMPGKIIQG----MKKAG 415
Query: 573 DQNPYSVVLLDEIEK----SHPDVLNILLQIMD 601
+NP V LLDEI+K D + LL+++D
Sbjct: 416 VKNP--VFLLDEIDKMGSSFRGDPASALLEVLD 446
Score = 30.9 bits (70), Expect = 1.5
Identities = 62/258 (24%), Positives = 100/258 (38%), Gaps = 60/258 (23%)
Query: 219 ILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IA 273
ILC VG PGVGKT++ + AK LG + + +G + I
Sbjct: 352 ILC--------LVGPPGVGKTSLGKSIAKA----------LGRKFVRISLGGVRDEAEIR 393
Query: 274 GTR--YRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS 331
G R Y G +I + +K+ N + +DEI + S D ++ L L
Sbjct: 394 GHRRTYIGAMPGKIIQGMKKAGV-KNPVFLLDEIDKM-----GSSFRGDPASALLEVLDP 447
Query: 332 GAVRCIGSTTYSEYRQFFEKD-----------------KALVRRFQKIDVSEPSIEDAIE 374
+ T+S++ D L+ R + I +S + ++ +E
Sbjct: 448 EQ-----NNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLE 502
Query: 375 IVKG--IKPYFEEH----HQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQI 428
I K I +EH +L + EAI+ ++ R R L ++ I I A +I
Sbjct: 503 IAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNL-EREIAKICRKAAKKI 561
Query: 429 LQPLSKRRKFITEKDIKK 446
L K I EK++KK
Sbjct: 562 LLKKEKSIVKIDEKNLKK 579
>gnl|CDD|35957 KOG0738, KOG0738, KOG0738, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 491
Score = 43.4 bits (102), Expect = 2e-04
Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 58/258 (22%)
Query: 156 KLNVDGSSAGSDGEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVG----RHE 211
+G S G K + F +L Y DL E +++ DIL + +
Sbjct: 157 ARETNGESKGLGNSNEQPHASLKGEDKKFDSL-GYDADLVEALER---DILQRNPNIKWD 212
Query: 212 EI---NRTIQIL----------------CRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDG 252
+I + ++L RR L VG PG GKT +A+ A +
Sbjct: 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC--- 269
Query: 253 MVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAG 312
G F++ L +++RG+ E+ ++ + + YA + ++IDEI +L
Sbjct: 270 -------GTTFFNVSSSTLT--SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQR 320
Query: 313 SASGISVDASNLLKPAL------------SSGAVRCIGSTTYSEYRQFFEKDKALVRRFQ 360
S +AS +K L +S V + +T + ++ D+AL RR +
Sbjct: 321 GGSS-EHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP-----WDIDEALRRRLE 374
Query: 361 K-IDVSEPSIEDAIEIVK 377
K I + P E ++K
Sbjct: 375 KRIYIPLPDAEARSALIK 392
>gnl|CDD|35952 KOG0733, KOG0733, KOG0733, Nuclear AAA ATPase (VCP subfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 802
Score = 43.1 bits (101), Expect = 3e-04
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKI 288
L G PG GKT++A A + LG S+ +++G G+ E++I+++
Sbjct: 227 LLHGPPGCGKTSLANAIAGE----------LGVPFLSISAPEIVSG--VSGESEKKIREL 274
Query: 289 VKEIESYANAILYIDEI 305
+ +S A I++IDEI
Sbjct: 275 FDQAKSNAPCIVFIDEI 291
Score = 31.9 bits (72), Expect = 0.75
Identities = 54/234 (23%), Positives = 84/234 (35%), Gaps = 42/234 (17%)
Query: 417 IDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMN-----RSIHTTSFSRDDDSVLSNL 471
I+V ++L +KR + TE K A M S+H + + L
Sbjct: 121 IEVDSNEANKKLLSLWAKRAEKRTEDSKPKNHAEMIVPGTKVSLHLSLARGILRQFVEGL 180
Query: 472 EKNLGTVVY----GQEEAIKKLSS---SIKIARAGLSDPNKPIGCYVFSGPTGVGKTEIS 524
E V + G ++ + +L IK S +P + GP G GKT ++
Sbjct: 181 EFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLA 240
Query: 525 KQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI--LADSVDQNPYSVVLL 582
+A LGV L E ++ G G + I L D N +V +
Sbjct: 241 NAIAGELGVPFLSISAPE---------IVS---GVSGESEKKIRELFDQAKSNAPCIVFI 288
Query: 583 DEIEKSHPD-----------VLNILLQIMDYGILTDQSGKKISFRNVILIMTTN 625
DEI+ P ++ LL MD + S +K V++I TN
Sbjct: 289 DEIDAITPKREEAQREMERRIVAQLLTSMD-----ELSNEKTKGDPVLVIGATN 337
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 42.8 bits (100), Expect = 3e-04
Identities = 30/168 (17%), Positives = 66/168 (39%), Gaps = 5/168 (2%)
Query: 514 GPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP-PGYVGFGQGGILADSV 572
G G GK+ + +L G +++ + E + + +P PG + G+L ++V
Sbjct: 156 GGRGSGKSFLISELCDEGGQRIVEIHLREITDAKVLIGTYTSPKPGDFEW-MKGVLIEAV 214
Query: 573 DQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQS-GKKISFRNVILIMTTNAGALEM 631
+ +L I+K+ VL+ LL +++ L S G+ + + I T++ ++
Sbjct: 215 VSGDW--ILFKRIDKAPHGVLSYLLTLLEKRRLLIPSRGETVLAHDNFQIFFTSSMKTKI 272
Query: 632 SKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQ 679
R+ + + F P+ + + F+ Q
Sbjct: 273 LGQRLWQILDLTQPDECVEVVRFDMPDLVFVGPLLFVFYKAIEMFEAQ 320
Score = 30.4 bits (68), Expect = 1.9
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 505 KPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV--SRLIGAPPGYVGF 562
KPI + G GVGKT + LA G +L+R ++SE + + S L G +
Sbjct: 1544 KPI---LLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRW 1600
Query: 563 GQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDY 602
L D VLLDEI + VL L +D+
Sbjct: 1601 MDAPFLHAMRDGG---WVLLDEINLASQSVLEGLNACLDH 1637
Score = 29.7 bits (66), Expect = 3.6
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 514 GPTGVGKTEISKQLAFALGVQLLRFDMSEYME-RHAVSRLIGAPPGYVGFGQGGILADSV 572
GPT GKT + LA G + +R + E+ + + + + G + F + G+L +++
Sbjct: 895 GPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKE-GVLVEAL 953
Query: 573 DQNPYSVVLLDEIEKSHPDVLNILLQIMD 601
+ Y +V LDE+ + DVL L +++D
Sbjct: 954 -RRGYWIV-LDELNLAPTDVLEALNRLLD 980
Score = 28.5 bits (63), Expect = 7.3
Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 20/208 (9%)
Query: 353 KALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKL 412
K+ + RF + + + +D I + P E +L+ K R +
Sbjct: 1676 KSFLNRFSVVKMDGLTTDDITHIANKMYPQVNEDWRLKIIKFMSRLQDNIEKDISFGSFG 1735
Query: 413 PDKAIDVIDEAGASQILQPLSK--------------RRKFITEKDIKKTIASMNRSIHTT 458
++ D +L + R+ T +D +T
Sbjct: 1736 SPWEFNLRDTLRWLILLNQVGTLEDVDTSDFIDESVVRRMRTVEDRVRTCELFKEVFGDY 1795
Query: 459 SFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCY------VF 512
S+ S K +V +E +L S + + L + C +
Sbjct: 1796 EPRTIGFSLSSQCFKVGHSVTVRMKERRPRLDDSFVLLHSQLQVLESVMRCINMNWPLIL 1855
Query: 513 SGPTGVGKTEISKQLAFALGVQLLRFDM 540
G TGVGKT + + LA G ++ F+
Sbjct: 1856 VGDTGVGKTSLLRFLASIFGQEMTLFNC 1883
>gnl|CDD|35964 KOG0745, KOG0745, KOG0745, Putative ATP-dependent Clp-type protease
(AAA+ ATPase superfamily) [Posttranslational
modification, protein turnover, chaperones].
Length = 564
Score = 41.1 bits (96), Expect = 0.001
Identities = 57/281 (20%), Positives = 103/281 (36%), Gaps = 77/281 (27%)
Query: 514 GPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD 573
GPTG GKT +++ LA L V D + + GYVG ++ +
Sbjct: 233 GPTGSGKTLLAQTLARVLDVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQ 281
Query: 574 QNPYSV-------VLLDEIEK--------------SHPDVLNILLQIMDYGILT-DQSGK 611
+ Y+V V LDE++K S V LL++++ ++ + G
Sbjct: 282 EAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGS 341
Query: 612 KISFRN-VILIMTTN-----AGAL---------EMSKARIGFGSSRN------------- 643
+ R + I TTN +GA + +GFG+ +
Sbjct: 342 RRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGV 401
Query: 644 -----------DDADKEALRNF-LSPEFLNRLDSIIPFFPLSSDIIRQVV----HKFIMK 687
+ + L +F + PEF+ R ++P L D + +V+ + +
Sbjct: 402 ENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQ 461
Query: 688 LELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIK 728
+ + HF+E+ + + K GAR L I++
Sbjct: 462 YKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILE 502
Score = 32.7 bits (74), Expect = 0.40
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG-DFE 282
K+N L +G G GKT +A+ A+ ++D VP + + AG Y G D E
Sbjct: 225 EKSNVLLLGPTGSGKTLLAQTLAR-VLD--VPFAICDCTTLTQ------AG--YVGEDVE 273
Query: 283 ERIKKIVKE----IESYANAILYIDEIHTLVGAGSASGISVDAS 322
I+K+++E +E I+++DE+ + + S D S
Sbjct: 274 SVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVS 317
>gnl|CDD|35959 KOG0740, KOG0740, KOG0740, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 428
Score = 40.8 bits (95), Expect = 0.001
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 26/168 (15%)
Query: 221 CRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD 280
R L G PG GKT +A+ A + GA F++ +L + +Y G+
Sbjct: 182 LREPVRGLLLFGPPGTGKTMLAKAIATE----------SGATFFNISASSLTS--KYVGE 229
Query: 281 FEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD--------ASNLLKPALSSG 332
E+ ++ + K S ++++IDEI +L+ S + K +
Sbjct: 230 SEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDD 289
Query: 333 AVRCIGSTTYSEYRQFFEKDKALVRRFQK-IDVSEPSIEDAIEIVKGI 379
V IG+T + +E D+A RRF K + + P E + K +
Sbjct: 290 RVLVIGAT-----NRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQL 332
>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 39.1 bits (91), Expect = 0.005
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 28/145 (19%)
Query: 232 GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKE 291
G PG GKT +A L A + L A T D E I++ K
Sbjct: 55 GPPGTGKTTLAR---------------LIAGTTNAAFEALSAVTSGVKDLREIIEEARKN 99
Query: 292 IESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEK 351
IL++DEIH + + L P + +G + IG+TT + FE
Sbjct: 100 RLLGRRTILFLDEIHRF---------NKAQQDALLPHVENGTIILIGATTENPS---FEL 147
Query: 352 DKALVRRFQKIDVSEPSIEDAIEIV 376
+ AL+ R + + +P + I+ +
Sbjct: 148 NPALLSRAR-VFELKPLSSEDIKKL 171
Score = 29.0 bits (65), Expect = 5.7
Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 36/142 (25%)
Query: 473 KNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALG 532
K+L VV GQE + + K R + + + GP G GKT +++ +A
Sbjct: 21 KSLDEVV-GQEHLLGE----GKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTN 73
Query: 533 VQLLRF--------DMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDE 584
D+ E +E +RL+G ++ LDE
Sbjct: 74 AAFEALSAVTSGVKDLREIIEEARKNRLLGRRT---------------------ILFLDE 112
Query: 585 IEKSHPDVLNILLQIMDYGILT 606
I + + + LL ++ G +
Sbjct: 113 IHRFNKAQQDALLPHVENGTII 134
>gnl|CDD|32436 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA
replication, recombination, and repair].
Length = 332
Score = 39.0 bits (91), Expect = 0.005
Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 23/151 (15%)
Query: 451 MNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCY 510
M+R I + S K L + GQE+ ++L IK A+ + +
Sbjct: 1 MDRIISPEKQEEEMKIERSLRPKTLDEFI-GQEKVKEQLQIFIKAAK----KRGEALDHV 55
Query: 511 VFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILAD 570
+ GP G+GKT ++ +A LGV L ++ P G + A
Sbjct: 56 LLFGPPGLGKTTLAHIIANELGVNL---------------KITSGP---ALEKPGDLAAI 97
Query: 571 SVDQNPYSVVLLDEIEKSHPDVLNILLQIMD 601
+ V+ +DEI + P V +L M+
Sbjct: 98 LTNLEEGDVLFIDEIHRLSPAVEEVLYPAME 128
>gnl|CDD|31414 COG1221, PspF, Transcriptional regulators containing an AAA-type
ATPase domain and a DNA-binding domain [Transcription /
Signal transduction mechanisms].
Length = 403
Score = 38.1 bits (88), Expect = 0.011
Identities = 51/293 (17%), Positives = 91/293 (31%), Gaps = 39/293 (13%)
Query: 413 PDKAIDVIDEAGASQILQPLSKRRKFITEKD-----IKKTIASMNRSIHTTSFSRDDDSV 467
A ++ A S L L + + SM+ T
Sbjct: 12 EAIAEQLMLRANVSHELNGLGREGDLAKINGRPVIFLPSEAFSMSEL---TELQALLPQA 68
Query: 468 LSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQL 527
L+ + G+ ++++L IK + P+ + G TG GK ++ +
Sbjct: 69 RPYLKSEALDDLIGESPSLQELREQIK----AYAPSGLPV---LIIGETGTGKELFARLI 121
Query: 528 AF----ALGVQLLRFDMSEYMERHAVSRLIGAPPG-YVG--FGQGGILADSVDQNPYSVV 580
+ F+ + Y E + L G G + G G+ G+ + +
Sbjct: 122 HALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANG----GTL 177
Query: 581 LLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGS 640
LDEI + P+ LL++++ G G + +V LI T E A
Sbjct: 178 FLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTR 237
Query: 641 SRNDD-----------ADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVH 682
N D L RL +P S + +R ++
Sbjct: 238 RLNILTITLPPLRERKEDILLLAEHFLKSEARRLG--LPLSVDSPEALRALLA 288
>gnl|CDD|37891 KOG2680, KOG2680, KOG2680, DNA helicase TIP49, TBP-interacting
protein [Transcription].
Length = 454
Score = 38.0 bits (88), Expect = 0.011
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTR-YRGDFEERIKK 287
L G PG GKTAIA G +K + D + G+ I+SL+M A T+ +R RIK+
Sbjct: 70 LIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAFRKSIGVRIKE 129
Query: 288 IVKEIE 293
+ IE
Sbjct: 130 ETEVIE 135
>gnl|CDD|35956 KOG0737, KOG0737, KOG0737, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 386
Score = 36.8 bits (85), Expect = 0.025
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 20/93 (21%)
Query: 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFE 282
R L G PG GKT +A+ AK+ GA ++ + NL +++ G+ +
Sbjct: 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVSVSNLT--SKWFGEAQ 172
Query: 283 ERIKKIVKEIESYAN----AILYIDEIHTLVGA 311
K+VK + S A+ +I++IDE+ + +G
Sbjct: 173 ----KLVKAVFSLASKLQPSIIFIDEVDSFLGQ 201
>gnl|CDD|33687 COG3899, COG3899, Predicted ATPase [General function prediction
only].
Length = 849
Score = 36.5 bits (84), Expect = 0.026
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 206 LVGRHEEINRTIQILCRRSKNNP---LYVGDPGVGKTAIAEGFAKQIVDG 252
L GR E+ + + R SK L G+ G+GK+A+ K I
Sbjct: 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51
>gnl|CDD|37239 KOG2028, KOG2028, KOG2028, ATPase related to the helicase subunit
of the Holliday junction resolvase [Replication,
recombination and repair].
Length = 554
Score = 36.6 bits (84), Expect = 0.028
Identities = 51/273 (18%), Positives = 97/273 (35%), Gaps = 42/273 (15%)
Query: 113 ALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKR---KEFANFQSKLNVD--GSSAGSD 167
A + P S F Q +E D S + ++ S G
Sbjct: 50 AGSASPKSWDEAFAQLEEKAHGDGDGDGSADSDGEDDPGHWDADAAEPATAFAASEPGRP 109
Query: 168 GEGFVNDYQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEI--NRTIQILCRRSK 225
+ + + + L P L E+++ +D VG+ + + ++ L +++
Sbjct: 110 HKRALAAEEIRQMLQHKP--------LAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNR 161
Query: 226 NNPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEER 284
+ + G PG GKT +A A ++ S L A D +
Sbjct: 162 IPSMILWGPPGTGKTTLARLIAST------------SKKHSYRFVELSATNAKTNDVRDI 209
Query: 285 IKKIVKE-IESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYS 343
++ E + IL+IDEIH + + P + +G + IG+TT +
Sbjct: 210 FEQAQNEKSLTKRKTILFIDEIHRFNKS---------QQDTFLPHVENGDITLIGATTEN 260
Query: 344 EYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIV 376
F+ + AL+ R ++ V E +A+ +
Sbjct: 261 PS---FQLNAALLSRC-RVFVLEKLPVNAVVTI 289
>gnl|CDD|31417 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein
[Transcription].
Length = 450
Score = 36.4 bits (84), Expect = 0.030
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTR-YRGDFEERIKK 287
L VG PG GKTA+A G A+++ + + + G+ I+SL++ A T+ R RIK+
Sbjct: 69 LIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRIKE 128
Query: 288 IVKEIESYANAILYIDEIHTL 308
+ E + + L
Sbjct: 129 TREVYEGEVVELEIRRARNPL 149
>gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 1856
Score = 36.1 bits (83), Expect = 0.038
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 512 FSGPTGVGKTEISKQLAFALGVQLLRFDMSEYME-RHAVSRLIGAPPGYVGFGQGGILAD 570
GPT GKT I K+LA A G ++R + E+ + + + + G + F +G ++
Sbjct: 445 LQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQA 504
Query: 571 SVDQNPYSVVLLDEIEKSHPDVLNILLQIMD 601
+ + ++LDE+ + DVL L +++D
Sbjct: 505 LRNGD---WIVLDELNLAPHDVLEALNRLLD 532
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 36.2 bits (84), Expect = 0.038
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKI 288
L VG G GK+ A+ A D +P LL LD+G L G G+ E R++++
Sbjct: 263 LLVGIQGTGKSLTAKAIAN---DWQLP--LL-----RLDVGKLFGGIV--GESESRMRQM 310
Query: 289 VKEIESYANAILYIDEI 305
++ E+ + IL+IDEI
Sbjct: 311 IRIAEALSPCILWIDEI 327
>gnl|CDD|36208 KOG0990, KOG0990, KOG0990, Replication factor C, subunit RFC5
[Replication, recombination and repair].
Length = 360
Score = 35.4 bits (81), Expect = 0.059
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 175 YQAKTDLNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSK-NNPLYVGD 233
Y+A + P Y EK + + I++ E I T + L+ G
Sbjct: 12 YKAGMPMPYIPQSPQYPQPWVEKYRPPFLGIVIK-QEPIWSTENRYSGMPGLPHLLFYGP 70
Query: 234 PGVGKTAIAEGFAKQI 249
PG GKT+ A+
Sbjct: 71 PGTGKTSTILANARDF 86
>gnl|CDD|73174 COG0470, HolB, ATPase involved in DNA replication [DNA replication,
recombination, and repair].
Length = 325
Score = 35.3 bits (80), Expect = 0.062
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 23/138 (16%)
Query: 479 VYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRF 538
+ +EA+K+L + P+ +F GP GVGKT + LA L +
Sbjct: 3 LVPWQEAVKRLLVQALESGRL---PHA----LLFYGPPGVGKTTAALALAKELLCENPTG 55
Query: 539 DMSEYMERHAVSRLIGAPPGYVGFGQGG--ILADSVDQ--------------NPYSVVLL 582
+ R G P ++ + V+Q Y VV++
Sbjct: 56 LLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVII 115
Query: 583 DEIEKSHPDVLNILLQIM 600
DE +K D N LL+ +
Sbjct: 116 DEADKLTEDAANALLKTL 133
>gnl|CDD|31413 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 444
Score = 35.6 bits (82), Expect = 0.062
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 11/60 (18%)
Query: 514 GPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD 573
GPTGVGKTEI+++LA G ++ + +++ E GYVG I+ D V+
Sbjct: 57 GPTGVGKTEIARRLAKLAGAPFIKVEATKFTE-----------VGYVGRDVESIIRDLVE 105
>gnl|CDD|33644 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 35.3 bits (81), Expect = 0.065
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 213 INRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLI 272
N I+ L + N L +G P VGKT + A+ + DG+ + L ++ +D + I
Sbjct: 125 ANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGI--NQFLPKKVGIIDERSEI 182
Query: 273 AG------TRYRG------DFEERIKKIVKEIESYANAILYIDEIHT 307
AG RG D + + ++ I S + ++ +DEI T
Sbjct: 183 AGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSPEVIIVDEIGT 229
>gnl|CDD|30835 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning].
Length = 265
Score = 35.4 bits (81), Expect = 0.067
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 483 EEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFD 539
EA++ L +++K A+ I V SG GVGK+ ++ LA AL G ++L D
Sbjct: 36 SEALRALRTNLKFAKVLRKGVKNVI--AVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLD 93
Query: 540 MSEYMERHAVSRLIGA--PPGYVGFGQGGILADSVDQNPYSVV 580
++ R++G PG G L + + V+
Sbjct: 94 ADLR--GPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVL 134
>gnl|CDD|146436 pfam03796, DnaB_C, DnaB-like helicase C terminal domain. The
hexameric helicase DnaB unwinds the DNA duplex at the
Escherichia coli chromosome replication fork. Although
the mechanism by which DnaB both couples ATP hydrolysis
to translocation along DNA and denatures the duplex is
unknown, a change in the quaternary structure of the
protein involving dimerization of the N-terminal domain
has been observed and may occur during the enzymatic
cycle. This C-terminal domain contains an ATP-binding
site and is therefore probably the site of ATP
hydrolysis.
Length = 186
Score = 35.2 bits (82), Expect = 0.068
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 26/88 (29%)
Query: 234 PGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGN------LIA------------GT 275
P +GKTA A A+ +L FSL+M L++ G
Sbjct: 28 PSMGKTAFALNIARNAALKQDKPVL----FFSLEMSAEQLAERLLSSESRISSSKLRSGQ 83
Query: 276 RYRGDFEERIKKIVKEIESYANAILYID 303
D+E ++ + + A LYID
Sbjct: 84 LSDEDWE----RLAEAAGELSEAPLYID 107
>gnl|CDD|35958 KOG0739, KOG0739, KOG0739, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 439
Score = 34.9 bits (80), Expect = 0.092
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 28/142 (19%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKI 288
L G PG GK+ +A+ A + + FS+ +L+ +++ G+ E+ +K +
Sbjct: 170 LLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDLV--SKWMGESEKLVKNL 217
Query: 289 VKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPAL---------SSGAVRCIGS 339
+ +I++IDEI +L G+ S + +AS +K + V +G+
Sbjct: 218 FEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDNDGVLVLGA 275
Query: 340 TTYSEYRQFFEKDKALVRRFQK 361
T + D A+ RRF+K
Sbjct: 276 TNIP-----WVLDSAIRRRFEK 292
>gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 34.7 bits (79), Expect = 0.11
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 14/56 (25%)
Query: 479 VYGQEEAIKKLSSSI---KIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL 531
V GQE +K LS+++ +IA A Y+FSGP GVGKT I++ LA AL
Sbjct: 18 VVGQEHVVKTLSNALENGRIAHA-----------YLFSGPRGVGKTTIARILAKAL 62
>gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 34.1 bits (79), Expect = 0.15
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 26/122 (21%)
Query: 511 VFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPP---GYVGFGQGGI 567
GP G GK+ ++K LA AL D ++ +V GY GQ +
Sbjct: 2 WLYGPPGCGKSTLAKYLARALL------DHLGLPKKDSVYSRNPDDDFWDGYT--GQPVV 53
Query: 568 LADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT----DQSGKKISFRNVILIMT 623
+ D QNP P L++++ K F + +I+T
Sbjct: 54 IIDDFGQNP-----------DGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVT 102
Query: 624 TN 625
+N
Sbjct: 103 SN 104
>gnl|CDD|31673 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 33.4 bits (76), Expect = 0.24
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEE 283
N + +G PGVGKT +A +++ + + + A D+ + + G EE
Sbjct: 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP----DLLSKLKAAFDEGRLEE 159
Query: 284 RIKKIVKEIESYANAILYIDEI 305
++ + +K+++ +L ID+I
Sbjct: 160 KLLRELKKVD-----LLIIDDI 176
Score = 30.4 bits (68), Expect = 1.9
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 511 VFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYM--ERHAVSRLIGAPPGYVGFGQGGIL 568
V GP GVGKT LA A+G +LL+ +S +S+L A + L
Sbjct: 109 VLLGPPGVGKTH----LAIAIGNELLKAGISVLFITAPDLLSKLKAA---FDEGRLEEKL 161
Query: 569 ADSVDQNPYSVVLLDEI--EKSHPDVLNILLQIMD 601
+ + ++++D+I E + ++L Q++
Sbjct: 162 LRELKK--VDLLIIDDIGYEPFSQEEADLLFQLIS 194
>gnl|CDD|177080 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 33.5 bits (77), Expect = 0.24
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 20/81 (24%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFE----ER 284
L VG PG GKT +A+ A + VP FS I+G+ + F R
Sbjct: 220 LLVGPPGTGKTLLAKAIAGE---AEVP-------FFS------ISGSEFVEMFVGVGAAR 263
Query: 285 IKKIVKEIESYANAILYIDEI 305
++ + K+ + + I++IDEI
Sbjct: 264 VRDLFKKAKENSPCIVFIDEI 284
Score = 28.5 bits (64), Expect = 7.0
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 28/108 (25%)
Query: 510 YVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI-- 567
+ GP G GKT ++K +A V SE++E +VG G +
Sbjct: 219 VLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM------------FVGVGAARVRD 266
Query: 568 LADSVDQNPYSVVLLDEIE--------------KSHPDVLNILLQIMD 601
L +N +V +DEI+ LN LL MD
Sbjct: 267 LFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD 314
>gnl|CDD|35951 KOG0732, KOG0732, KOG0732, AAA+-type ATPase containing the
bromodomain [Posttranslational modification, protein
turnover, chaperones].
Length = 1080
Score = 33.4 bits (76), Expect = 0.27
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 23/158 (14%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAG-TRYRGDFEERIKK 287
L+ G PG GKT +A A G R S M +++ G+ E +++
Sbjct: 303 LFHGPPGTGKTLMARALA--------AACSRGNRKISFFMRKGADCLSKWVGEAERQLRL 354
Query: 288 IVKEIESYANAILYIDEIHTLVGAGSASGISVDAS---NLLK--PALSS-GAVRCIGSTT 341
+ +E + +I++ DEI L S+ + AS LL L S G V IG+T
Sbjct: 355 LFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414
Query: 342 YSEYRQFFEKDKALVR--RFQKID-VSEPSIEDAIEIV 376
+ D AL R RF + P ++ +I+
Sbjct: 415 RPDA-----IDPALRRPGRFDREFYFPLPDVDARAKIL 447
>gnl|CDD|36207 KOG0989, KOG0989, KOG0989, Replication factor C, subunit RFC4
[Replication, recombination and repair].
Length = 346
Score = 33.0 bits (75), Expect = 0.34
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 479 VYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLR 537
+ GQE ++ L +++ R L P+ Y+F GP G GKT + A AL QL
Sbjct: 38 LAGQEHVVQVLKNALL--RRIL--PH-----YLFYGPPGTGKTSTALAFARALNCEQLFP 88
Query: 538 FDMSEYMERHAV-SRLIGAPPGYV-GFGQGGILADSVD---QNPYSVVLLDEIEKSHPDV 592
+E +A R I + F + +L D P+ +++LDE + D
Sbjct: 89 ---CRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDA 145
Query: 593 LNILLQIMD 601
L + M+
Sbjct: 146 QAALRRTME 154
Score = 31.8 bits (72), Expect = 0.82
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQI 249
TEK + D L G+ + L RR + L+ G PG GKT+ A FA+ +
Sbjct: 26 WTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL 81
>gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 32.9 bits (75), Expect = 0.36
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 511 VFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHA 548
V G G GK+ I + LA AL + D + +E+
Sbjct: 6 VLIGFMGAGKSTIGRALAKALNLPF--IDTDQEIEKRT 41
>gnl|CDD|147593 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus.
The RuvB protein makes up part of the RuvABC revolvasome
which catalyses the resolution of Holliday junctions
that arise during genetic recombination and DNA repair.
Branch migration is catalysed by the RuvB protein that
is targeted to the Holliday junction by the structure
specific RuvA protein. This family contains the
N-terminal region of the protein.
Length = 234
Score = 32.8 bits (76), Expect = 0.43
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQL 535
GQE+ + L I+ A+ + + + GP G+GKT ++ +A +GV +
Sbjct: 28 GQEKVKENLKIFIEAAKK----RGEALDHVLLYGPPGLGKTTLANIIANEMGVNI 78
>gnl|CDD|35960 KOG0741, KOG0741, KOG0741, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 744
Score = 32.2 bits (73), Expect = 0.56
Identities = 83/404 (20%), Positives = 164/404 (40%), Gaps = 78/404 (19%)
Query: 218 QILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRY 277
Q+ + K LY G PG GKT IA K +++ P I+ G I + +Y
Sbjct: 250 QLGIKHVKGILLY-GPPGTGKTLIARQIGK-MLNAREPKIVNGPEILN----------KY 297
Query: 278 RGDFEERIKKIVKEIESY-----ANAILYI---DEIHTLVGA-GSASGISVDASNLLKPA 328
G+ EE ++K+ + E AN+ L+I DEI + GS +G + ++
Sbjct: 298 VGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQL 357
Query: 329 LSS-------GAVRCIGSTTYSEYRQFFEKDKALVR--RFQ-KIDVSEPSIEDAIEIVKG 378
LS + IG T + D+AL+R R + ++++S P + ++I+K
Sbjct: 358 LSKMDGVEQLNNILVIGMTNRKDL-----IDEALLRPGRLEVQMEISLPDEKGRLQILKI 412
Query: 379 IKPYFEEHHQL----------RYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQI 428
E+++L +K A ++ V+ S A++ +AG
Sbjct: 413 HTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQS-----FAMNRHVKAGGKVE 467
Query: 429 LQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKK 488
+ P++ +T D + + +F ++ L N G + +G + +
Sbjct: 468 VDPVAIENLKVTRGDFLNALEDV-----KPAFGISEED-LERFVMN-GMINWGPP--VTR 518
Query: 489 LSSSIKIARAGLSDPNK-PIGCYVFSGPTGVGKTEISKQLAFALGVQLLRF----DMSEY 543
+ K+ + + + P+ + GP G GKT ++ ++A + ++ DM
Sbjct: 519 ILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGL 578
Query: 544 MERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEK 587
E + + I D+ ++P S++++D+IE+
Sbjct: 579 SESAKCAHIK------------KIFEDAY-KSPLSIIVVDDIER 609
>gnl|CDD|35953 KOG0734, KOG0734, KOG0734, AAA+-type ATPase containing the
peptidase M41 domain [Posttranslational modification,
protein turnover, chaperones].
Length = 752
Score = 31.9 bits (72), Expect = 0.61
Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 28/159 (17%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKI 288
L VG PG GKT +A A + VP F +M + G R++ +
Sbjct: 341 LLVGPPGTGKTLLARAVAGE---AGVPFFYASGSEFD-EM--------FVGVGARRVRDL 388
Query: 289 VKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALS-------SGAVRCIGSTT 341
++ A I++IDEI VG A L L + + IG+T
Sbjct: 389 FAAAKARAPCIIFIDEIDA-VGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN 447
Query: 342 YSEYRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVK 377
+ E DKAL R RF + + V P + EI+K
Sbjct: 448 FPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILK 481
>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP..
Length = 154
Score = 32.1 bits (73), Expect = 0.69
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 514 GPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHA 548
G G GKT + + LA ALG+ D+ E +E+ A
Sbjct: 6 GMMGAGKTTVGRLLAKALGLPF--VDLDELIEQRA 38
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase. MCADs are
mitochondrial beta-oxidation enzymes, which catalyze the
alpha,beta dehydrogenation of the corresponding medium
chain acyl-CoA by FAD, which becomes reduced. The
reduced form of MCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. MCAD is a homotetramer.
Length = 378
Score = 31.8 bits (72), Expect = 0.75
Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 51/202 (25%)
Query: 173 NDYQAKTDLNLF---PALSAYCV-------DL----TEKVKKGKVDILVGRHEEINR--- 215
ND Q K L P + AYCV D+ T+ KKG I+ G+ I
Sbjct: 98 NDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGK 157
Query: 216 -TIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAG 274
L RS +P K ++ F IV+ P I G + L+MG +
Sbjct: 158 ANWYFLLARSDPDP---------KCPASKAFTGFIVEADTPGIQPGRK--ELNMGQRCSD 206
Query: 275 TRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV 334
TR FE+ ++ KE + L+G G+ I++ A + +P +++GAV
Sbjct: 207 TRGI-TFED--VRVPKE--------------NVLIGEGAGFKIAMGAFDKTRPPVAAGAV 249
Query: 335 ----RCIG-STTYSEYRQFFEK 351
R + +T Y+ R+ F K
Sbjct: 250 GLAQRALDEATKYALERKTFGK 271
>gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing
the AAA+-type ATPase domain [Posttranslational
modification, protein turnover, chaperones].
Length = 953
Score = 31.1 bits (70), Expect = 1.1
Identities = 61/322 (18%), Positives = 109/322 (33%), Gaps = 52/322 (16%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKI 288
L G PG GKT + A LG + +D L+A + E +++ I
Sbjct: 435 LLHGPPGSGKTTVVRAVAS----------ELGLHLLEVDCYELVAESA--SHTETKLQAI 482
Query: 289 VKEIESYANAILYIDEIHTLVGAGS-------ASGISVDASNLLKPALSSGAVRCIGSTT 341
+ A+L++ + L I SN S V + +T+
Sbjct: 483 FSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKF-SCPPVIVVATTS 541
Query: 342 YSEYRQFFEKDKALVRR--FQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAA 399
E A ++ +I+V S E +EI++ +Q K+ R
Sbjct: 542 SIE------DLPADIQSLFLHEIEVPALSEEQRLEILQWYLN-HLPLNQDVNLKQLARKT 594
Query: 400 VQLSVRHFTS--RKLPDKAIDVIDEAGASQILQPLSK-----RRKFITEKDIKKTIASMN 452
S + A I G + LQ + +TE+D K ++ +
Sbjct: 595 SGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQ 654
Query: 453 RSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPN------KP 506
+ + +V + + V G EE ++ +I++ L P +
Sbjct: 655 KEFSDAIGAPKIPNV--SWDD-----VGGLEEVKTEILDTIQLP---LKHPELFSSGLRK 704
Query: 507 IGCYVFSGPTGVGKTEISKQLA 528
+ GP G GKT ++K +A
Sbjct: 705 RSGILLYGPPGTGKTLLAKAVA 726
Score = 30.0 bits (67), Expect = 3.1
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFE 282
R ++ L G PG GKT +A+ A + S+ L+ Y G E
Sbjct: 703 RKRSGILLYGPPGTGKTLLAKAVATE----------CSLNFLSVKGPELL--NMYVGQSE 750
Query: 283 ERIKKIVKEIESYANAILYIDEIHTLVGAGSASGIS 318
E ++++ + S A +++ DE+ +L SG S
Sbjct: 751 ENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS 786
>gnl|CDD|31663 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 31.1 bits (70), Expect = 1.2
Identities = 45/289 (15%), Positives = 94/289 (32%), Gaps = 43/289 (14%)
Query: 204 DILVGRHEEINRTIQILCRRSKN----NPLYVGDPGVGKTAIAEGFAKQIVD--GMVPDI 257
+ L R EEIN+ L + N + G G GKTA + +++ + V +
Sbjct: 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVV 76
Query: 258 LLGARIFS------LDMGNLIAGTRYRGD-FEERIKKIVKEI-ESYANAILYIDEIHTLV 309
+ + N + GD E +K++ + + I+ +DE+ LV
Sbjct: 77 YINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALV 136
Query: 310 GAGSASGISVDASNLLK-PALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPS 368
+LL+ P + V I + ++ + + +I +
Sbjct: 137 -----DKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYT 191
Query: 369 IEDAIEIVK-----GIKPYF--------------EEHHQLRYSKEAIRAAVQLSVRHFTS 409
E+ +I++ G E R + + +R A +++ R +
Sbjct: 192 AEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSR 251
Query: 410 RKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIK-KTIASMNRSIHT 457
+ D + +E + + + I I + I T
Sbjct: 252 KVSEDHVREAQEEIERDVL---EEVLKTLPLHQKIVLLAIVELTVEIST 297
>gnl|CDD|30672 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 31.0 bits (70), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 510 YVFSGPTGVGKTEISKQLAFALGVQLLRFD 539
V +GPT GKT ++ LA LG +++ D
Sbjct: 6 IVIAGPTASGKTALAIALAKRLGGEIISLD 35
>gnl|CDD|36209 KOG0991, KOG0991, KOG0991, Replication factor C, subunit RFC2
[Replication, recombination and repair].
Length = 333
Score = 31.1 bits (70), Expect = 1.3
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGM 253
EK + + +VG + + R I + N + G PG GKT A++++
Sbjct: 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDS 76
Query: 254 VPDILL 259
+ +L
Sbjct: 77 YKEAVL 82
>gnl|CDD|35945 KOG0726, KOG0726, KOG0726, 26S proteasome regulatory complex,
ATPase RPT2 [Posttranslational modification, protein
turnover, chaperones].
Length = 440
Score = 30.7 bits (69), Expect = 1.5
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 232 GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKE 291
G+PG GKT +A+ A Q A + LI +Y GD + ++++ +
Sbjct: 226 GEPGTGKTLLAKAVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRV 273
Query: 292 IESYANAILYIDEI 305
E +A +I++IDEI
Sbjct: 274 AEEHAPSIVFIDEI 287
>gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 30.7 bits (70), Expect = 1.6
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSL---DMGNLIAGTRYRG 279
N L +G PGVGKT +A Q G + D+ + R G
Sbjct: 45 EQAENLLLLGPPGVGKTHLACALGHQACR-------AGYSVLFTRTPDLVEQLKRARGDG 97
Query: 280 DFEERIKKIVKEIESYANAILYIDEI 305
++++ K +L +D+I
Sbjct: 98 RLARTLQRLAKA------DLLILDDI 117
Score = 30.7 bits (70), Expect = 1.7
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 509 CYVFSGPTGVGKTEISKQLAFALGVQLLR 537
+ GP GVGKT LA ALG Q R
Sbjct: 49 NLLLLGPPGVGKT----HLACALGHQACR 73
>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits..
Length = 150
Score = 30.2 bits (68), Expect = 2.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 509 CYVFSGPTGVGKTEISKQLAFALGVQLLRFD 539
V G +G GK+ + K LA LG + D
Sbjct: 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGD 31
>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines..
Length = 137
Score = 30.1 bits (68), Expect = 2.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 510 YVFSGPTGVGKTEISKQL 527
V SGP+GVGK+ + K+L
Sbjct: 2 IVLSGPSGVGKSTLLKRL 19
>gnl|CDD|35946 KOG0727, KOG0727, KOG0727, 26S proteasome regulatory complex,
ATPase RPT3 [Posttranslational modification, protein
turnover, chaperones].
Length = 408
Score = 30.0 bits (67), Expect = 2.6
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 38/139 (27%)
Query: 502 DPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVG 561
DP P G ++ GP G GKT ++K +A +R SE+++++
Sbjct: 187 DP--PRGVLLY-GPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY-------------- 229
Query: 562 FGQGGILADSV----DQNPYSVVLLDEIEK-----------SHPDVLNILLQIMDYGILT 606
G+G + V +N S++ +DEI+ + +V IL+++++
Sbjct: 230 LGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGF 289
Query: 607 DQSGKKISFRNVILIMTTN 625
DQ+ NV +IM TN
Sbjct: 290 DQTT------NVKVIMATN 302
>gnl|CDD|35961 KOG0742, KOG0742, KOG0742, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 630
Score = 30.0 bits (67), Expect = 2.6
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 448 IASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPI 507
I S++ H SR S S + L V+ +++K + IA A P
Sbjct: 330 IGSLSALKHPIQGSR---SASSRGKDPLEGVIL--HPSLEKRIEDLAIATANTKKHQAPF 384
Query: 508 GCYVFSGPTGVGKTEISKQLA 528
+F GP G GKT +++LA
Sbjct: 385 RNILFYGPPGTGKTMFARELA 405
>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor..
Length = 147
Score = 29.7 bits (67), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 513 SGPTGVGKTEISKQLAFALGVQLL 536
GP G GK+ ++K LA LG+ L
Sbjct: 5 DGPAGSGKSTVAKLLAKKLGLPYL 28
>gnl|CDD|143510 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme PvsE. This subfamily is composed
of PvsE from Vibrio parahaemolyticus and similar
proteins. PvsE is a vibrioferrin biosynthesis protein
which is homologous to eukaryotic ornithine
decarboxylase (ODC) and diaminopimelate decarboxylase
(DapDC). ODC and DapDC are fold type III PLP-dependent
enzymes that contain an N-terminal PLP-binding
TIM-barrel domain and a C-terminal beta-sandwich domain,
similar to bacterial alanine racemases. It has been
suggested that PvsE may be involved in the biosynthesis
of the polycarboxylate siderophore vibrioferrin. It may
catalyze the decarboxylation of serine to yield
ethanolamine. PvsE may require homodimer formation and
the presence of the PLP cofactor for activity.
Length = 377
Score = 29.6 bits (67), Expect = 4.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 490 SSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLL 536
+S +IA + P+ P+ +F GP GKT+ A A GV+ +
Sbjct: 55 ASGGEIAHVRAAVPDAPL---IFGGP---GKTDSELAQALAQGVERI 95
>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands..
Length = 271
Score = 29.1 bits (65), Expect = 4.5
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 510 YVFSGPTGVGKT----EISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGY 559
+ + TGVGKT E + L GV++ + E + R A RL+G G
Sbjct: 33 IILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTA-RRLLGQYAGK 85
>gnl|CDD|111276 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079. This
uncharacterized family contains a P-loop.
Length = 123
Score = 29.2 bits (66), Expect = 4.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 511 VFSGPTGVGKTEISKQLAFALGVQ 534
+ SG G GKT + LA LG+
Sbjct: 19 LLSGDLGAGKTTFVRGLAKGLGIT 42
>gnl|CDD|48392 cd02146, NfsA_FRP, This family contains NADPH-dependent flavin
reductase and oxygen-insensitive nitroreductase. These
enzymes are homodimeric flavoproteins that contain one
FMN per monomer as a cofactor. Flavin reductase
catalyzes the reduction of flavin by using NADPH as an
electron donor. Oxygen-insensitive nitroreductase, such
as NfsA protein in Escherichia coli, catalyzes reduction
of nitrocompounds using NADPH as electron donor..
Length = 229
Score = 29.0 bits (65), Expect = 4.8
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 403 SVRHFTSRKLPDKAIDVIDEAG----ASQILQPLSKRRKFITEKDIKKTIA 449
S+R F +PD+ ++ + A S LQ S +T+ ++K +A
Sbjct: 10 SIRKFKDEPIPDETLETLIAAAQSAPTSSNLQAYSVIV--VTDPELKAKLA 58
>gnl|CDD|73300 cd02037, MRP-like, MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions as a Na+/H+
antiporter..
Length = 169
Score = 28.9 bits (65), Expect = 5.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 511 VFSGPTGVGKTEISKQLAFAL 531
V SG GVGK+ ++ LA AL
Sbjct: 4 VMSGKGGVGKSTVAVNLALAL 24
>gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 28.8 bits (64), Expect = 5.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 504 NKPIGCYVFSGPTGVGKT 521
N+P G + +GPTG GKT
Sbjct: 255 NRPQGLILVTGPTGSGKT 272
>gnl|CDD|31390 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 28.7 bits (64), Expect = 6.1
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 196 EKVKKGKVDILVGRHEEINRTIQ 218
+ + +GKVDI++G H +++ ++
Sbjct: 691 KGLAEGKVDIVIGTHRLLSKDVK 713
>gnl|CDD|37153 KOG1942, KOG1942, KOG1942, DNA helicase, TBP-interacting protein
[Replication, recombination and repair].
Length = 456
Score = 28.8 bits (64), Expect = 6.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFS 265
L G PG GKTA+A ++++ + ++G+ ++S
Sbjct: 68 LLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104
>gnl|CDD|35954 KOG0735, KOG0735, KOG0735, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 952
Score = 28.5 bits (63), Expect = 7.7
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFE 282
R + L G PG GKT +A A R S+ L++ +Y G E
Sbjct: 699 RLRTGILLYGPPGCGKTLLASAIASN----------SNLRFISVKGPELLS--KYIGASE 746
Query: 283 ERIKKIVKEIESYANAILYIDEIHTL 308
+ ++ + + +S IL+ DE ++
Sbjct: 747 QNVRDLFERAQSAKPCILFFDEFDSI 772
>gnl|CDD|32257 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
and metabolism].
Length = 299
Score = 28.3 bits (63), Expect = 8.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 514 GPTGVGKTEISKQLAFALGV 533
G +GVGK+ I+ +LA LG+
Sbjct: 96 GASGVGKSTIAGELARRLGI 115
>gnl|CDD|37454 KOG2243, KOG2243, KOG2243, Ca2+ release channel (ryanodine receptor)
[Signal transduction mechanisms].
Length = 5019
Score = 28.1 bits (62), Expect = 9.1
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 742 GKLKKGGGVVKVSLNPDKSASSPIFFEIENSGSNISLETEEKEVED 787
G L +K++ +P SP N GS L+TE+ E ED
Sbjct: 2354 GLLAAMEEAIKIAEDPALDGPSP------NQGSKKELDTEDDEEED 2393
>gnl|CDD|147155 pfam04851, ResIII, Type III restriction enzyme, res subunit.
Length = 103
Score = 28.3 bits (64), Expect = 9.2
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 15/59 (25%)
Query: 480 YGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRF 538
Q EAI+ L K G TG GKT + +L L +
Sbjct: 6 PYQIEAIRNLL-------------EKKRGL--IVMATGSGKTLTAAKLIARLLKGKKKV 49
>gnl|CDD|30201 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK)..
Length = 179
Score = 28.3 bits (63), Expect = 9.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 513 SGPTGVGKTEISKQLAFALGVQLLR 537
+GP+G GKT +K+L+ L V +
Sbjct: 5 AGPSGSGKTTFAKKLSNQLRVNGIG 29
>gnl|CDD|35699 KOG0478, KOG0478, KOG0478, DNA replication licensing factor, MCM4
component [Replication, recombination and repair].
Length = 804
Score = 28.0 bits (62), Expect = 9.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 196 EKVKKGKVDILV-GRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAI 241
E VKKG + L G +E ++ + R N L VGDPG K+ +
Sbjct: 435 EDVKKGLLLQLFGGTRKEDEKSGRF---RGDINILLVGDPGTSKSQL 478
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.135 0.375
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 9,299,935
Number of extensions: 508708
Number of successful extensions: 2044
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1989
Number of HSP's successfully gapped: 159
Length of query: 798
Length of database: 6,263,737
Length adjustment: 102
Effective length of query: 696
Effective length of database: 4,059,619
Effective search space: 2825494824
Effective search space used: 2825494824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)