BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] (798 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 1627 bits (4212), Expect = 0.0, Method: Compositional matrix adjust. Identities = 798/798 (100%), Positives = 798/798 (100%) Query: 1 MSFFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNL 60 MSFFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNL Sbjct: 1 MSFFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNL 60 Query: 61 LNYIDNDSSNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDS 120 LNYIDNDSSNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDS Sbjct: 61 LNYIDNDSSNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDS 120 Query: 121 HATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGEGFVNDYQAKTD 180 HATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGEGFVNDYQAKTD Sbjct: 121 HATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGEGFVNDYQAKTD 180 Query: 181 LNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTA 240 LNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTA Sbjct: 181 LNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTA 240 Query: 241 IAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAIL 300 IAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAIL Sbjct: 241 IAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAIL 300 Query: 301 YIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQ 360 YIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQ Sbjct: 301 YIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQ 360 Query: 361 KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420 KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI Sbjct: 361 KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420 Query: 421 DEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVY 480 DEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVY Sbjct: 421 DEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVY 480 Query: 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDM 540 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDM Sbjct: 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDM 540 Query: 541 SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIM 600 SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIM Sbjct: 541 SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIM 600 Query: 601 DYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL 660 DYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL Sbjct: 601 DYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL 660 Query: 661 NRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGA 720 NRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGA Sbjct: 661 NRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGA 720 Query: 721 RPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKSASSPIFFEIENSGSNISLET 780 RPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKSASSPIFFEIENSGSNISLET Sbjct: 721 RPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKSASSPIFFEIENSGSNISLET 780 Query: 781 EEKEVEDIKSDTDSLTIV 798 EEKEVEDIKSDTDSLTIV Sbjct: 781 EEKEVEDIKSDTDSLTIV 798 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 281 bits (719), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 133/248 (53%), Positives = 183/248 (73%), Gaps = 2/248 (0%) Query: 184 FPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAE 243 F AL YC DLTE+ + GK+D ++GR +E+ R IQ+L RR+KNNP+ +GDPGVGKTAI E Sbjct: 158 FDALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIE 217 Query: 244 GFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY-ANAILYI 302 G A +I++G +P+ L G R+ +LDMG LIAG ++RG+FEER+K ++ EI S IL+I Sbjct: 218 GLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFI 277 Query: 303 DEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKI 362 DE+H LVGAG G ++DASNLLKP+L+ G + CIG+TT EYR++ EKD AL RRFQ + Sbjct: 278 DELHVLVGAGKTDG-AMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSL 336 Query: 363 DVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDE 422 V EP++ D I I++G+K +E+HH++R S A+ +A LS R+ T R LPDKAID++DE Sbjct: 337 LVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDE 396 Query: 423 AGASQILQ 430 A A +Q Sbjct: 397 ASARVRMQ 404 Score = 251 bits (641), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 127/283 (44%), Positives = 187/283 (66%), Gaps = 8/283 (2%) Query: 471 LEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA-- 528 +E + V GQ A++ +S++++ RAGL DP +P+G ++F GPTGVGKTE+ K LA Sbjct: 562 IETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARL 621 Query: 529 -FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEK 587 F ++R DMSEYME+H+VSRLIG+PPGYVG+ +GG L ++V ++PY VVL DEIEK Sbjct: 622 LFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEK 681 Query: 588 SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDAD 647 +H DV NILLQ++D G LTD G+ + FRN ++IMT+N GA + I G S +D Sbjct: 682 AHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL----IEDGDSVHDKV- 736 Query: 648 KEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVIN 707 +R+ PEFLNRLD II F L + + ++V + ++ ++E+ IS F ++VI+ Sbjct: 737 MGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVID 796 Query: 708 WLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGV 750 WL GYD GARPL+R+I+ +++ PLA+ +L + G + Sbjct: 797 WLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSI 839 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 45.4 bits (106), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 82/346 (23%), Positives = 137/346 (39%), Gaps = 75/346 (21%) Query: 487 KKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMER 546 K+L+ S K + L+ N + GPTG GKT +++ LA + V D + E Sbjct: 98 KRLAHSSKSSNVELAKSN-----ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTE- 151 Query: 547 HAVSRLIGAPPGYVGFGQGGIL------AD-SVDQNPYSVVLLDEIEK------------ 587 GYVG I+ AD +V++ +V +DE++K Sbjct: 152 ----------AGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITR 201 Query: 588 --SHPDVLNILLQIMDYGI--LTDQSGKKISFRNVILIMTTN-----AGAL--------- 629 S V LL+IM+ I + Q G+K + + + TTN GA Sbjct: 202 DVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISA 261 Query: 630 EMSKARIGFGSSRNDDADK---EALRNF---------LSPEFLNRLDSIIPFFPLSSD-- 675 KA IGF + D ++ E LRN L PEF+ RL + L + Sbjct: 262 RGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSL 321 Query: 676 --IIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKV 733 I+ + + I + + + + F E+ + + K GAR L I+++ Sbjct: 322 IRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEK---- 377 Query: 734 PLADEILFGKLKKGGGVVKVSLNPDKSASSP--IFFEIENSGSNIS 777 L D + + KG V +S + K + P ++ + + +N+S Sbjct: 378 ILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKANVS 423 Score = 32.7 bits (73), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 16/104 (15%) Query: 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG-DFE 282 +K+N L VG G GKT +A+ A+ I+D VP F++ + Y G D E Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLAR-IID--VP--------FTMADATTLTEAGYVGEDVE 160 Query: 283 ERIKKIVK----EIESYANAILYIDEIHTLVGAGSASGISVDAS 322 I K+++ +E I+YIDE+ + I+ D S Sbjct: 161 NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVS 204 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 38.1 bits (87), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 14/102 (13%) Query: 507 IGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGG 566 I C+V GP GVGKT +++ +A A G Q +R + + + G Y+G G Sbjct: 368 ILCFV--GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIR---GHRRTYIGSMPGR 422 Query: 567 I---LADSVDQNPYSVVLLDEIEKSHPDVLN----ILLQIMD 601 I L + NP ++LLDEI+K D+ LL+++D Sbjct: 423 IIQSLKRAKRSNP--LLLLDEIDKMGSDLRGDPSAALLEVLD 462 Score = 36.6 bits (83), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 29/174 (16%) Query: 170 GFVNDYQAKTDLNLFPALSAYCVDL--TEKVKKGKVDILVGRHEEINRTIQILCRRSKNN 227 G D ++KT NL A+ D EKVK+ ++ L + I ILC Sbjct: 317 GVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILC------ 370 Query: 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IAGTR--YRGD 280 +VG PGVGKT++A+ AK G + + +G + I G R Y G Sbjct: 371 --FVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIRGHRRTYIGS 418 Query: 281 FEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV 334 RI + +K + +N +L +DEI + G+ S +L PA +S V Sbjct: 419 MPGRIIQSLKRAKR-SNPLLLLDEIDKM-GSDLRGDPSAALLEVLDPAQNSSFV 470 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 38.1 bits (87), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 11/60 (18%) Query: 514 GPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD 573 GPTGVGKT IS++LA G ++ +++++ E GYVG I+ D VD Sbjct: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 Score = 26.2 bits (56), Expect = 2.1, Method: Compositional matrix adjust. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 227 NPLYVGDPGVGKTAIAEGFAK 247 N L VG GVGKTAI+ A+ Sbjct: 55 NILLVGPTGVGKTAISRRLAR 75 >gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62] Length = 329 Score = 33.5 bits (75), Expect = 0.014, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 558 GYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKIS 614 GYVGF + ++ Q S I+++ PD L++LL ++ GI DQ+ ++++ Sbjct: 157 GYVGFCAPSVWISNLVQKRQS-----SIKRAWPDALDLLLICVESGISIDQALRRVA 208 >gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 401 Score = 32.0 bits (71), Expect = 0.038, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 26/174 (14%) Query: 250 VDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLV 309 D +P I++ I+S+D GD IK+I + Y NAI YIDE+H + Sbjct: 173 TDLSIPKIIIFESIYSMD-----------GDIAP-IKEICDLADQY-NAITYIDEVHAVG 219 Query: 310 GAGSA-SGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPS 368 GS +GIS + + + SG + G T+ Y E +R F + S Sbjct: 220 IHGSCGAGISEREGIMNRITIISGTL-AKGFGTFGGYIAASENLCDFIRSFASGFIFSTS 278 Query: 369 IEDAI--EIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420 + AI V I+ Y ++H+ R K+ + QL RH L +KAI I Sbjct: 279 LPPAIASASVTSIQ-YIKQHYDER--KKYLERVKQL--RH----SLENKAIPCI 323 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 30.0 bits (66), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Query: 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGV 533 GQ EA L I+ A+A + + +F GP G+GKT +++ +A LGV Sbjct: 32 GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARELGV 80 Score = 29.6 bits (65), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 29/101 (28%) Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKI 288 L+VG PG+GKT +A+ A++ LG F G +IA GD + + Sbjct: 58 LFVGPPGLGKTTLAQVVARE----------LGVN-FRSTSGPVIAKA---GD----LAAL 99 Query: 289 VKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPAL 329 + +E +L+IDEIH L S+ +L PA+ Sbjct: 100 LTNLED--RDVLFIDEIHRL---------SIIVEEILYPAM 129 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 28.9 bits (63), Expect = 0.36, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 31/130 (23%) Query: 471 LEKNLGTVVY----GQEEAIKKLSSSIKIARAGLSDPNK--------PIGCYVFSGPTGV 518 L N+G+V + G +EA + L + L DP K P G + GP G Sbjct: 138 LSGNVGSVTFKDVAGVDEAKEDLQEIVDF----LCDPQKFKRLGGRIPHGVLLV-GPPGT 192 Query: 519 GKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI--LADSVDQNP 576 GKT +++ +A V S+++E +VG G + + + N Sbjct: 193 GKTLLARAVAGEANVPFFTISGSDFVEL------------FVGVGASRVRDMFEQAKNNS 240 Query: 577 YSVVLLDEIE 586 +V +DEI+ Sbjct: 241 PCIVFVDEID 250 Score = 28.9 bits (63), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 24/122 (19%) Query: 211 EEINRTIQILCRRSK---------NNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGA 261 E++ + LC K + L VG PG GKT +A A + VP Sbjct: 158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVP------ 208 Query: 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDA 321 F++ + + + G R++ + ++ ++ + I+++DEI + G GI + Sbjct: 209 -FFTISGSDFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAV---GRHRGIGLGG 262 Query: 322 SN 323 N Sbjct: 263 GN 264 >gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 26.2 bits (56), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 510 YVFSGPTGVGKTEISKQ-------LAFALGV--QLLRFDMSEYMERHAVSRLIGAPPGYV 560 +V G +GVGKT I+KQ L +GV + R D +Y++ +S+ + Sbjct: 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ-----SQFK 59 Query: 561 GFGQGGILADSVD-QNPYSVVLLDEIEKSHPDVLNILLQIMDYGI 604 G+ G+ ++ ++ Y L ++I +ILL + G+ Sbjct: 60 GWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGL 104 >gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 559 Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 444 IKKTIASMNRS-----IHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARA 498 I +T+A + RS +HT + DDD++L ++ G E + + S R Sbjct: 145 IPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMRE 204 Query: 499 G 499 G Sbjct: 205 G 205 >gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 25.8 bits (55), Expect = 3.0, Method: Compositional matrix adjust. Identities = 10/20 (50%), Positives = 14/20 (70%) Query: 227 NPLYVGDPGVGKTAIAEGFA 246 + ++VGD GVGKT I E + Sbjct: 29 HTIFVGDNGVGKTNILEAIS 48 >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 25.4 bits (54), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 279 GDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIG 338 GD I +++K I S L + + G+G ++ + +PA+ + + Sbjct: 151 GDQPAAIAQLLKGIHSREKVQLLLG----VTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206 Query: 339 STTYSEYRQFF 349 + YSE++ FF Sbjct: 207 AQLYSEFKNFF 217 >gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 325 Score = 25.0 bits (53), Expect = 4.5, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Query: 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGD 233 + EK+ GKV + E T++ + RR K+NPL VG+ Sbjct: 94 IAEKIMYGKVLMHSISFPE-GFTVKQMARRLKDNPLLVGE 132 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 25.0 bits (53), Expect = 5.2, Method: Compositional matrix adjust. Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 21/202 (10%) Query: 1 MSFFSENLEKVLHQALV---------LANERNHEYATLEHLLL-ALIDDSDAAIVMLSCN 50 ++FF + ++H + + ++ +Y E L LI+ S + + L C+ Sbjct: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577 Query: 51 VDLKVLKNNLLNYIDNDSS-NKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGAN 109 + KN+L N+ID+ +KL F T Q V+ V + +S Sbjct: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS-GVFNCESD-------QE 629 Query: 110 ILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGE 169 I V+L S+ + + ++ E + + ++N + I ++ Q + ++GSS S G Sbjct: 630 INVSLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFVLEGSSIFSFGS 687 Query: 170 GFVNDYQAKTDLNLFPALSAYC 191 + + + + N LS C Sbjct: 688 KYKRIFSNRIEENYLTILSLIC 709 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 24.6 bits (52), Expect = 5.6, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 232 GDPGVGKTAIAEGFAKQIVDG 252 G PG+GKT++A A + D Sbjct: 226 GRPGMGKTSLATNIAYNVADA 246 >gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] Length = 261 Score = 24.6 bits (52), Expect = 5.7, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 19/29 (65%) Query: 114 LFSEPDSHATYFLQEQEMTLYDAVNFISH 142 +F EP++ ATY Q +E ++ A+ I++ Sbjct: 27 VFDEPNNEATYESQRKEKSIDSAIQPITN 55 >gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 24.6 bits (52), Expect = 6.9, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 510 YVFSGPTGVGKTEISKQ-------LAFALGV--QLLRFDMSEYMERHAVSRLIGAPPGYV 560 +V G +GVG+T I+KQ L +GV + R D +Y++ +S+ + Sbjct: 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ-----SQFK 59 Query: 561 GFGQGGILADSVD-QNPYSVVLLDEIEKSHPDVLNILLQIMDYGI 604 G+ G+ ++ ++ Y L ++I +ILL + G+ Sbjct: 60 GWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGL 104 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.135 0.375 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 506,636 Number of Sequences: 1233 Number of extensions: 22339 Number of successful extensions: 99 Number of sequences better than 100.0: 22 Number of HSP's better than 100.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 33 length of query: 798 length of database: 328,796 effective HSP length: 81 effective length of query: 717 effective length of database: 228,923 effective search space: 164137791 effective search space used: 164137791 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)