BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease
ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62]
         (798 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 1627 bits (4212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 798/798 (100%), Positives = 798/798 (100%)

Query: 1   MSFFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNL 60
           MSFFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNL
Sbjct: 1   MSFFSENLEKVLHQALVLANERNHEYATLEHLLLALIDDSDAAIVMLSCNVDLKVLKNNL 60

Query: 61  LNYIDNDSSNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDS 120
           LNYIDNDSSNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDS
Sbjct: 61  LNYIDNDSSNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGANILVALFSEPDS 120

Query: 121 HATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGEGFVNDYQAKTD 180
           HATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGEGFVNDYQAKTD
Sbjct: 121 HATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGEGFVNDYQAKTD 180

Query: 181 LNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTA 240
           LNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTA
Sbjct: 181 LNLFPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTA 240

Query: 241 IAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAIL 300
           IAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAIL
Sbjct: 241 IAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAIL 300

Query: 301 YIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQ 360
           YIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQ
Sbjct: 301 YIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQ 360

Query: 361 KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420
           KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI
Sbjct: 361 KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420

Query: 421 DEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVY 480
           DEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVY
Sbjct: 421 DEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVY 480

Query: 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDM 540
           GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDM
Sbjct: 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDM 540

Query: 541 SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIM 600
           SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIM
Sbjct: 541 SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIM 600

Query: 601 DYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL 660
           DYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL
Sbjct: 601 DYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFL 660

Query: 661 NRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGA 720
           NRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGA
Sbjct: 661 NRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGA 720

Query: 721 RPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKSASSPIFFEIENSGSNISLET 780
           RPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKSASSPIFFEIENSGSNISLET
Sbjct: 721 RPLERIIKEHVKVPLADEILFGKLKKGGGVVKVSLNPDKSASSPIFFEIENSGSNISLET 780

Query: 781 EEKEVEDIKSDTDSLTIV 798
           EEKEVEDIKSDTDSLTIV
Sbjct: 781 EEKEVEDIKSDTDSLTIV 798


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score =  281 bits (719), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 183/248 (73%), Gaps = 2/248 (0%)

Query: 184 FPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAE 243
           F AL  YC DLTE+ + GK+D ++GR +E+ R IQ+L RR+KNNP+ +GDPGVGKTAI E
Sbjct: 158 FDALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIE 217

Query: 244 GFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY-ANAILYI 302
           G A +I++G +P+ L G R+ +LDMG LIAG ++RG+FEER+K ++ EI S     IL+I
Sbjct: 218 GLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFI 277

Query: 303 DEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKI 362
           DE+H LVGAG   G ++DASNLLKP+L+ G + CIG+TT  EYR++ EKD AL RRFQ +
Sbjct: 278 DELHVLVGAGKTDG-AMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSL 336

Query: 363 DVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDE 422
            V EP++ D I I++G+K  +E+HH++R S  A+ +A  LS R+ T R LPDKAID++DE
Sbjct: 337 LVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDE 396

Query: 423 AGASQILQ 430
           A A   +Q
Sbjct: 397 ASARVRMQ 404



 Score =  251 bits (641), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 127/283 (44%), Positives = 187/283 (66%), Gaps = 8/283 (2%)

Query: 471 LEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA-- 528
           +E  +   V GQ  A++ +S++++  RAGL DP +P+G ++F GPTGVGKTE+ K LA  
Sbjct: 562 IETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARL 621

Query: 529 -FALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEK 587
            F     ++R DMSEYME+H+VSRLIG+PPGYVG+ +GG L ++V ++PY VVL DEIEK
Sbjct: 622 LFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEK 681

Query: 588 SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDAD 647
           +H DV NILLQ++D G LTD  G+ + FRN ++IMT+N GA  +    I  G S +D   
Sbjct: 682 AHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL----IEDGDSVHDKV- 736

Query: 648 KEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVIN 707
              +R+   PEFLNRLD II F  L  + + ++V   + ++   ++E+ IS  F ++VI+
Sbjct: 737 MGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVID 796

Query: 708 WLVSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLKKGGGV 750
           WL   GYD   GARPL+R+I+ +++ PLA+ +L   +  G  +
Sbjct: 797 WLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSI 839


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 45.4 bits (106), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 137/346 (39%), Gaps = 75/346 (21%)

Query: 487 KKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMER 546
           K+L+ S K +   L+  N      +  GPTG GKT +++ LA  + V     D +   E 
Sbjct: 98  KRLAHSSKSSNVELAKSN-----ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTE- 151

Query: 547 HAVSRLIGAPPGYVGFGQGGIL------AD-SVDQNPYSVVLLDEIEK------------ 587
                      GYVG     I+      AD +V++    +V +DE++K            
Sbjct: 152 ----------AGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITR 201

Query: 588 --SHPDVLNILLQIMDYGI--LTDQSGKKISFRNVILIMTTN-----AGAL--------- 629
             S   V   LL+IM+  I  +  Q G+K   +  + + TTN      GA          
Sbjct: 202 DVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISA 261

Query: 630 EMSKARIGFGSSRNDDADK---EALRNF---------LSPEFLNRLDSIIPFFPLSSD-- 675
              KA IGF +   D  ++   E LRN          L PEF+ RL  +     L  +  
Sbjct: 262 RGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSL 321

Query: 676 --IIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKV 733
             I+ +  +  I + +     + +   F E+ +  +       K GAR L  I+++    
Sbjct: 322 IRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEK---- 377

Query: 734 PLADEILFGKLKKGGGVVKVSLNPDKSASSP--IFFEIENSGSNIS 777
            L D +    + KG   V +S +  K  + P  ++ +  +  +N+S
Sbjct: 378 ILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDRRDEKANVS 423



 Score = 32.7 bits (73), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 16/104 (15%)

Query: 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG-DFE 282
           +K+N L VG  G GKT +A+  A+ I+D  VP        F++     +    Y G D E
Sbjct: 112 AKSNILLVGPTGCGKTYLAQTLAR-IID--VP--------FTMADATTLTEAGYVGEDVE 160

Query: 283 ERIKKIVK----EIESYANAILYIDEIHTLVGAGSASGISVDAS 322
             I K+++     +E     I+YIDE+  +        I+ D S
Sbjct: 161 NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVS 204


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 38.1 bits (87), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 14/102 (13%)

Query: 507 IGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGG 566
           I C+V  GP GVGKT +++ +A A G Q +R  +    +   +    G    Y+G   G 
Sbjct: 368 ILCFV--GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIR---GHRRTYIGSMPGR 422

Query: 567 I---LADSVDQNPYSVVLLDEIEKSHPDVLN----ILLQIMD 601
           I   L  +   NP  ++LLDEI+K   D+       LL+++D
Sbjct: 423 IIQSLKRAKRSNP--LLLLDEIDKMGSDLRGDPSAALLEVLD 462



 Score = 36.6 bits (83), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 29/174 (16%)

Query: 170 GFVNDYQAKTDLNLFPALSAYCVDL--TEKVKKGKVDILVGRHEEINRTIQILCRRSKNN 227
           G   D ++KT  NL  A+     D    EKVK+  ++ L  +   I     ILC      
Sbjct: 317 GVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILC------ 370

Query: 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IAGTR--YRGD 280
             +VG PGVGKT++A+  AK            G +   + +G +     I G R  Y G 
Sbjct: 371 --FVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIRGHRRTYIGS 418

Query: 281 FEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV 334
              RI + +K  +  +N +L +DEI  + G+      S     +L PA +S  V
Sbjct: 419 MPGRIIQSLKRAKR-SNPLLLLDEIDKM-GSDLRGDPSAALLEVLDPAQNSSFV 470


>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 437

 Score = 38.1 bits (87), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 11/60 (18%)

Query: 514 GPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD 573
           GPTGVGKT IS++LA   G   ++ +++++ E            GYVG     I+ D VD
Sbjct: 60  GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108



 Score = 26.2 bits (56), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 227 NPLYVGDPGVGKTAIAEGFAK 247
           N L VG  GVGKTAI+   A+
Sbjct: 55  NILLVGPTGVGKTAISRRLAR 75


>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 329

 Score = 33.5 bits (75), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 558 GYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKIS 614
           GYVGF    +   ++ Q   S      I+++ PD L++LL  ++ GI  DQ+ ++++
Sbjct: 157 GYVGFCAPSVWISNLVQKRQS-----SIKRAWPDALDLLLICVESGISIDQALRRVA 208


>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 401

 Score = 32.0 bits (71), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 26/174 (14%)

Query: 250 VDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLV 309
            D  +P I++   I+S+D           GD    IK+I    + Y NAI YIDE+H + 
Sbjct: 173 TDLSIPKIIIFESIYSMD-----------GDIAP-IKEICDLADQY-NAITYIDEVHAVG 219

Query: 310 GAGSA-SGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPS 368
             GS  +GIS     + +  + SG +   G  T+  Y    E     +R F    +   S
Sbjct: 220 IHGSCGAGISEREGIMNRITIISGTL-AKGFGTFGGYIAASENLCDFIRSFASGFIFSTS 278

Query: 369 IEDAI--EIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420
           +  AI    V  I+ Y ++H+  R  K+ +    QL  RH     L +KAI  I
Sbjct: 279 LPPAIASASVTSIQ-YIKQHYDER--KKYLERVKQL--RH----SLENKAIPCI 323


>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 334

 Score = 30.0 bits (66), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGV 533
           GQ EA   L   I+ A+A      + +   +F GP G+GKT +++ +A  LGV
Sbjct: 32  GQVEACSNLKVFIEAAKAR----AEALDHVLFVGPPGLGKTTLAQVVARELGV 80



 Score = 29.6 bits (65), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 29/101 (28%)

Query: 229 LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKI 288
           L+VG PG+GKT +A+  A++          LG   F    G +IA     GD    +  +
Sbjct: 58  LFVGPPGLGKTTLAQVVARE----------LGVN-FRSTSGPVIAKA---GD----LAAL 99

Query: 289 VKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPAL 329
           +  +E     +L+IDEIH L         S+    +L PA+
Sbjct: 100 LTNLED--RDVLFIDEIHRL---------SIIVEEILYPAM 129


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 28.9 bits (63), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 31/130 (23%)

Query: 471 LEKNLGTVVY----GQEEAIKKLSSSIKIARAGLSDPNK--------PIGCYVFSGPTGV 518
           L  N+G+V +    G +EA + L   +      L DP K        P G  +  GP G 
Sbjct: 138 LSGNVGSVTFKDVAGVDEAKEDLQEIVDF----LCDPQKFKRLGGRIPHGVLLV-GPPGT 192

Query: 519 GKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI--LADSVDQNP 576
           GKT +++ +A    V       S+++E             +VG G   +  + +    N 
Sbjct: 193 GKTLLARAVAGEANVPFFTISGSDFVEL------------FVGVGASRVRDMFEQAKNNS 240

Query: 577 YSVVLLDEIE 586
             +V +DEI+
Sbjct: 241 PCIVFVDEID 250



 Score = 28.9 bits (63), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 24/122 (19%)

Query: 211 EEINRTIQILCRRSK---------NNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGA 261
           E++   +  LC   K         +  L VG PG GKT +A   A +     VP      
Sbjct: 158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVP------ 208

Query: 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDA 321
             F++   + +    + G    R++ + ++ ++ +  I+++DEI  +   G   GI +  
Sbjct: 209 -FFTISGSDFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAV---GRHRGIGLGG 262

Query: 322 SN 323
            N
Sbjct: 263 GN 264


>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 186

 Score = 26.2 bits (56), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 510 YVFSGPTGVGKTEISKQ-------LAFALGV--QLLRFDMSEYMERHAVSRLIGAPPGYV 560
           +V  G +GVGKT I+KQ       L   +GV  +  R D  +Y++   +S+       + 
Sbjct: 5   FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ-----SQFK 59

Query: 561 GFGQGGILADSVD-QNPYSVVLLDEIEKSHPDVLNILLQIMDYGI 604
           G+   G+  ++   ++ Y   L ++I        +ILL +   G+
Sbjct: 60  GWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGL 104


>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 559

 Score = 26.2 bits (56), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 444 IKKTIASMNRS-----IHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARA 498
           I +T+A + RS     +HT  +  DDD++L ++         G E  +  +  S    R 
Sbjct: 145 IPETMALVIRSPVGNIVHTGDWKLDDDAILGDVTDKDSLCAIGNEGILALMCDSTNAMRE 204

Query: 499 G 499
           G
Sbjct: 205 G 205


>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 375

 Score = 25.8 bits (55), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 227 NPLYVGDPGVGKTAIAEGFA 246
           + ++VGD GVGKT I E  +
Sbjct: 29  HTIFVGDNGVGKTNILEAIS 48


>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 805

 Score = 25.4 bits (54), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 279 GDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIG 338
           GD    I +++K I S     L +     + G+G    ++     + +PA+     + + 
Sbjct: 151 GDQPAAIAQLLKGIHSREKVQLLLG----VTGSGKTFTMAKVIEAMQRPAIVMAPNKILA 206

Query: 339 STTYSEYRQFF 349
           +  YSE++ FF
Sbjct: 207 AQLYSEFKNFF 217


>gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 325

 Score = 25.0 bits (53), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGD 233
           + EK+  GKV +      E   T++ + RR K+NPL VG+
Sbjct: 94  IAEKIMYGKVLMHSISFPE-GFTVKQMARRLKDNPLLVGE 132


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 25.0 bits (53), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 21/202 (10%)

Query: 1   MSFFSENLEKVLHQALV---------LANERNHEYATLEHLLL-ALIDDSDAAIVMLSCN 50
           ++FF   +  ++H   +         +   ++ +Y   E  L   LI+ S +  + L C+
Sbjct: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577

Query: 51  VDLKVLKNNLLNYIDNDSS-NKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGIVTGAN 109
               + KN+L N+ID+    +KL   F      T   Q V+   V + +S          
Sbjct: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS-GVFNCESD-------QE 629

Query: 110 ILVALFSEPDSHATYFLQEQEMTLYDAVNFISHGISKRKEFANFQSKLNVDGSSAGSDGE 169
           I V+L S+  +   +  ++ E + + ++N  +  I  ++     Q +  ++GSS  S G 
Sbjct: 630 INVSLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKRIARGVQEQFVLEGSSIFSFGS 687

Query: 170 GFVNDYQAKTDLNLFPALSAYC 191
            +   +  + + N    LS  C
Sbjct: 688 KYKRIFSNRIEENYLTILSLIC 709


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 24.6 bits (52), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 232 GDPGVGKTAIAEGFAKQIVDG 252
           G PG+GKT++A   A  + D 
Sbjct: 226 GRPGMGKTSLATNIAYNVADA 246


>gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 261

 Score = 24.6 bits (52), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 114 LFSEPDSHATYFLQEQEMTLYDAVNFISH 142
           +F EP++ ATY  Q +E ++  A+  I++
Sbjct: 27  VFDEPNNEATYESQRKEKSIDSAIQPITN 55


>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 185

 Score = 24.6 bits (52), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 510 YVFSGPTGVGKTEISKQ-------LAFALGV--QLLRFDMSEYMERHAVSRLIGAPPGYV 560
           +V  G +GVG+T I+KQ       L   +GV  +  R D  +Y++   +S+       + 
Sbjct: 5   FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ-----SQFK 59

Query: 561 GFGQGGILADSVD-QNPYSVVLLDEIEKSHPDVLNILLQIMDYGI 604
           G+   G+  ++   ++ Y   L ++I        +ILL +   G+
Sbjct: 60  GWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGL 104


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,636
Number of Sequences: 1233
Number of extensions: 22339
Number of successful extensions: 99
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 33
length of query: 798
length of database: 328,796
effective HSP length: 81
effective length of query: 717
effective length of database: 228,923
effective search space: 164137791
effective search space used: 164137791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)