HHsearch alignment for GI: 254780164 and conserved domain: pfam02617
>pfam02617 ClpS ATP-dependent Clp protease adaptor protein ClpS. In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins.
Probab=99.95 E-value=3.5e-28 Score=181.74 Aligned_cols=78 Identities=49% Similarity=0.770 Sum_probs=74.2
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 26899748999718988489999999998299989999999998237968999638999999999999999975998179
Q gi|254780164|r 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQC 133 (138)
Q Consensus 54 ~k~P~~YkVIL~NDd~ttmefVi~vL~~vf~~~~e~A~~iml~vH~~G~avvgv~~~E~AE~k~~qv~~~Ar~~~~PL~~ 133 (138)
T Consensus 1 ~~~p~~y~Vil~NDd~~t~e~Vi~~L~~~~~~~~~~A~~~~~~vh~~G~avv~~~~~e~Ae~k~~~v~~~g~----PL~~ 76 (78)
T pfam02617 1 LKPPPMYKVILLNDDYTTMEFVVEVLQKVFGMSEEQATQIMLEVHKEGRAVVGVGTREIAETKVAQVHAYGR----PLRA 76 (78)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCC----CCEE
T ss_conf 999997179998699986999999999997899999999999853587089999469999999999996497----8354
Q ss_pred EE
Q ss_conf 86
Q gi|254780164|r 134 IM 135 (138)
Q Consensus 134 ~i 135 (138)
T Consensus 77 ti 78 (78)
T pfam02617 77 TI 78 (78)
T ss_pred EC
T ss_conf 59