BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease
adaptor protein ClpS [Candidatus Liberibacter asiaticus str. psy62]
(138 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
>gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Liberibacter asiaticus str. psy62]
gi|254039841|gb|ACT56637.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Liberibacter asiaticus str. psy62]
Length = 138
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY 60
MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY
Sbjct: 1 MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY 60
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV
Sbjct: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
Query: 121 MNYSRQHQYPLQCIMEQK 138
MNYSRQHQYPLQCIMEQK
Sbjct: 121 MNYSRQHQYPLQCIMEQK 138
>gi|300022147|ref|YP_003754758.1| ATP-dependent Clp protease adaptor protein ClpS [Hyphomicrobium
denitrificans ATCC 51888]
gi|299523968|gb|ADJ22437.1| ATP-dependent Clp protease adaptor protein ClpS [Hyphomicrobium
denitrificans ATCC 51888]
Length = 129
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/124 (50%), Positives = 80/124 (64%), Gaps = 4/124 (3%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEV----RFSSKVRVPKLYRVLLVNDNYTPMEF 74
L + + I MA G D DS+ + K + P LY+VLL+ND++TPMEF
Sbjct: 6 LPIAALIRMAGKDDPPNGPGRDDRDGDSKTGIVTKTRPKTKKPSLYKVLLLNDDFTPMEF 65
Query: 75 VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
V+ VLQ FF K E A IML VHH+G+G CGVY YEIAE KV QVM++SRQH +PLQC
Sbjct: 66 VVLVLQRFFNKGQEDATRIMLHVHHKGVGICGVYTYEIAETKVTQVMDFSRQHGHPLQCT 125
Query: 135 MEQK 138
ME++
Sbjct: 126 MEKE 129
>gi|144898735|emb|CAM75599.1| ATP-dependent Clp protease adaptor protein clpS [Magnetospirillum
gryphiswaldense MSR-1]
Length = 146
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 78/123 (63%)
Query: 16 DGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFV 75
D + + + + + DN ++ K + P +Y+VL++ND+YTPMEFV
Sbjct: 24 DRRVPMGTNLANETMSDHNDDKQNGDNQTGVVIKTRPKTKKPSMYKVLMLNDDYTPMEFV 83
Query: 76 IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
+HVL++FF K E A IML VH +G+G CGVY YE+AE KV QVM+ +RQ+Q+PLQC +
Sbjct: 84 VHVLEHFFNKSREDATRIMLHVHTRGVGICGVYTYEVAETKVTQVMDLARQNQHPLQCTI 143
Query: 136 EQK 138
E+
Sbjct: 144 EKD 146
>gi|114765842|ref|ZP_01444935.1| ATP-dependent Clp protease, adaptor protein ClpS [Pelagibaca
bermudensis HTCC2601]
gi|114541841|gb|EAU44878.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp.
HTCC2601]
Length = 120
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 54/114 (47%), Positives = 76/114 (66%), Gaps = 3/114 (2%)
Query: 25 IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
I +A+S D D ++ K + P LY+VLL+ND+YTPMEFV+HVL+ FF
Sbjct: 10 IRLANSPSLPGD---GDGDADVVLQTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFG 66
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 67 MSHAQAFEIMLTVHKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMEKE 120
>gi|148553784|ref|YP_001261366.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingomonas
wittichii RW1]
gi|148498974|gb|ABQ67228.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingomonas
wittichii RW1]
Length = 131
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 79/125 (63%)
Query: 13 VKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPM 72
V I++ +F +K + L R ++ + P Y+VL++ND+YTPM
Sbjct: 6 VSPAPIMSHSAFTTAPTGMATRKDGDDNGTGLGLATRTRTRTKKPSPYKVLMLNDDYTPM 65
Query: 73 EFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132
EFV+ LQ FF + E A +ML VH +G+G CGV++YE+AE KV+QV++++RQ+Q+PLQ
Sbjct: 66 EFVVLCLQRFFRMNLEDATRVMLHVHQKGVGVCGVFSYEVAETKVSQVVDFARQNQHPLQ 125
Query: 133 CIMEQ 137
C +E+
Sbjct: 126 CTLEK 130
>gi|126031981|gb|ABN71557.1| putative ATP-dependent Clp protease adaptor protein ClpS
[uncultured bacterium]
Length = 131
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 49/127 (38%), Positives = 79/127 (62%), Gaps = 3/127 (2%)
Query: 14 KRDGILALMSFIFMAD---SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYT 70
+ A F+ ++ ++ G + + + +K + P ++VL++ND+YT
Sbjct: 4 RHSLAPAFAPFVRASERAAGDDDESGRPGDQDQVGVATKTRTKPKKPSQFKVLMLNDDYT 63
Query: 71 PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
PMEFV+ L+ FF D E A +ML VH +G+G CG++ YEIAE KVNQVM+++RQ+Q+P
Sbjct: 64 PMEFVVMCLKRFFSMDLEQATRVMLHVHQRGVGVCGIFPYEIAETKVNQVMDFARQNQHP 123
Query: 131 LQCIMEQ 137
LQC +E+
Sbjct: 124 LQCTLEK 130
>gi|90424816|ref|YP_533186.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris BisB18]
gi|90106830|gb|ABD88867.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris BisB18]
Length = 137
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 4 FDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVL 63
S +HR L + + + K + P LYRVL
Sbjct: 7 HRAYSPFHRSATQSRLRSAPR----MGNDEGRSSGPGNPATSVITKVKPKTKRPNLYRVL 62
Query: 64 LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
++ND+YTPMEFV+HVL+ FF D E A +ML VHH GIGECGV+ YEIAE KV QVM++
Sbjct: 63 ILNDDYTPMEFVVHVLEKFFQMDVEAATQVMLHVHHHGIGECGVFTYEIAETKVTQVMDF 122
Query: 124 SRQHQYPLQCIMEQK 138
+R+HQ+PLQC+ME+K
Sbjct: 123 ARKHQHPLQCVMEKK 137
>gi|114328313|ref|YP_745470.1| ATP-dependent Clp protease adaptor protein ClpS [Granulibacter
bethesdensis CGDNIH1]
gi|114316487|gb|ABI62547.1| ATP-dependent Clp protease adaptor protein ClpS [Granulibacter
bethesdensis CGDNIH1]
Length = 178
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/109 (47%), Positives = 72/109 (66%)
Query: 30 SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
S + +G A + R P LY+VL++ND+YTPMEFV+HVL+ FF K E
Sbjct: 70 SDEHGQGHAGDGTSTGLIAKTRPATRKPSLYKVLMLNDDYTPMEFVVHVLERFFQKTREE 129
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A IML VH +G+G CGV+ YE+AE KV QVM+ +R +Q+PLQC +E++
Sbjct: 130 ATQIMLHVHRRGVGVCGVFTYEVAETKVTQVMDLARHNQHPLQCTIEKE 178
>gi|296283029|ref|ZP_06861027.1| ATP-dependent Clp protease adaptor protein ClpS [Citromicrobium
bathyomarinum JL354]
Length = 140
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/124 (41%), Positives = 78/124 (62%)
Query: 14 KRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPME 73
RD A + + + D + + +K + P Y+VL++ND+YTPME
Sbjct: 16 PRDAAPLPSRAPTAAGNDDHGEDGRPADPNVGVATKTRAKPKKPSQYKVLMLNDDYTPME 75
Query: 74 FVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQC 133
FV+ VL+ FF D E A +ML+VH +G+G CG++ YE+AE KVNQVM+++RQ+Q+PLQC
Sbjct: 76 FVVIVLKRFFRMDMEEATRVMLQVHQRGVGVCGIFPYEVAETKVNQVMDFARQNQHPLQC 135
Query: 134 IMEQ 137
+E+
Sbjct: 136 TLEK 139
>gi|330993783|ref|ZP_08317715.1| ATP-dependent Clp protease adapter protein ClpS [Gluconacetobacter
sp. SXCC-1]
gi|329759051|gb|EGG75563.1| ATP-dependent Clp protease adapter protein ClpS [Gluconacetobacter
sp. SXCC-1]
Length = 175
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 6/131 (4%)
Query: 14 KRDGILALMSFIFMADSRMNKKG------IAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
R A ++ + G D +D + + R P +Y+VL++ND
Sbjct: 45 SRPAGAAARPLGHGGNTPPRRNGGGQDSPPGNDDGMIDVVIHTRPQTRKPAMYKVLMLND 104
Query: 68 NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
+YTPMEFV+HVL+ FF K+ E A IML VH +G+G CGV+ YE+AE KV QVM+ +RQ+
Sbjct: 105 DYTPMEFVVHVLERFFQKNREEATDIMLHVHKRGVGVCGVFTYEVAETKVTQVMDLARQN 164
Query: 128 QYPLQCIMEQK 138
Q+PLQC +E+
Sbjct: 165 QHPLQCTIEKD 175
>gi|312113135|ref|YP_004010731.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodomicrobium
vannielii ATCC 17100]
gi|311218264|gb|ADP69632.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodomicrobium
vannielii ATCC 17100]
Length = 128
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/109 (52%), Positives = 76/109 (69%), Gaps = 2/109 (1%)
Query: 32 MNKKGIAEFDNC--LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
M + DN + + K + P LY+VLL+ND+YTPMEFV++VL+ FF K HE
Sbjct: 20 MAGNNGFKDDNGLKTGAVTKTRPKTKRPSLYKVLLLNDDYTPMEFVVYVLERFFNKPHEE 79
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A IM+ VH +G+G CGVY YE+AE KV QVMN++RQHQ+PLQC ME++
Sbjct: 80 ATLIMMHVHQKGVGICGVYTYEVAETKVTQVMNFARQHQHPLQCTMEKE 128
>gi|46201030|ref|ZP_00055925.2| COG2127: Uncharacterized conserved protein [Magnetospirillum
magnetotacticum MS-1]
Length = 110
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 51/110 (46%), Positives = 72/110 (65%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
S D ++ K + P +Y+VL++ND+YTPMEFV+HVL+ FF K E
Sbjct: 1 MSENGNDKQGGDDGQTGVVIKTRPKTKKPSMYKVLMLNDDYTPMEFVVHVLERFFNKSRE 60
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A +ML VH +G+G CGVY YE+AE KV QVM+ +RQ+Q+PLQC +E++
Sbjct: 61 DATRVMLNVHTRGVGICGVYTYEVAETKVTQVMDLARQNQHPLQCTIEKE 110
>gi|85709342|ref|ZP_01040407.1| ATP-dependent Clp protease adaptor protein ClpS [Erythrobacter sp.
NAP1]
gi|85688052|gb|EAQ28056.1| ATP-dependent Clp protease adaptor protein ClpS [Erythrobacter sp.
NAP1]
Length = 140
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 53/121 (43%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Query: 20 ALMSFIFMADSRMNKK---GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVI 76
A + + +AD K E D + + +K + P Y+VL++ND+YTPMEFV+
Sbjct: 19 AAFAAVRLADDDEKKDGGSDTDEGDGQVVIATKTRTKPKKPSQYKVLMLNDDYTPMEFVV 78
Query: 77 HVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
VL+ FF D E A +ML VH +G+G CG++ YE+AE KVNQVM+++RQ+Q+PLQC +E
Sbjct: 79 MVLKRFFGMDLEAATRVMLHVHQKGVGVCGIFPYEVAETKVNQVMDFARQNQHPLQCTLE 138
Query: 137 Q 137
+
Sbjct: 139 K 139
>gi|103485996|ref|YP_615557.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingopyxis
alaskensis RB2256]
gi|98976073|gb|ABF52224.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingopyxis
alaskensis RB2256]
Length = 121
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 77/116 (66%)
Query: 22 MSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN 81
S M + +K A + R +K + P +Y+VLL+ND+YTPMEFV+ VLQ
Sbjct: 5 ASSPHMVRAMADKDDDATGTPGVGIATRTRAKPKKPSMYKVLLLNDDYTPMEFVVMVLQR 64
Query: 82 FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
FF D E A +ML VH QG+G CGV++YE+AE KVNQVM+ +RQ+Q+PLQC +E+
Sbjct: 65 FFNMDIERATQVMLHVHQQGVGVCGVFSYEVAETKVNQVMDAARQNQHPLQCTLEK 120
>gi|83951021|ref|ZP_00959754.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius
nubinhibens ISM]
gi|83838920|gb|EAP78216.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius
nubinhibens ISM]
Length = 114
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 54/106 (50%), Positives = 73/106 (68%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
N G + D + V K + P LY+VLL+ND+YTPMEFV+HVL+ FF H A
Sbjct: 9 NSSGQDDGDGHISVAVATRPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMTHAEAFE 68
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH +G+ GV+++EIAE KV QVM+++RQHQ+PLQC ME++
Sbjct: 69 IMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARQHQHPLQCTMEKE 114
>gi|294013244|ref|YP_003546704.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
japonicum UT26S]
gi|292676574|dbj|BAI98092.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
japonicum UT26S]
Length = 135
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 53/122 (43%), Positives = 80/122 (65%)
Query: 16 DGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFV 75
+ + MA + +G + R ++ + P LY+VL++ND+YTPMEFV
Sbjct: 13 SSSTTMAYSVTMAGRDQDDQGDGSGGPNVGIATRTRARTKKPSLYKVLMLNDDYTPMEFV 72
Query: 76 IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
+HVLQ FF D E A +ML VH +G+G CG+++YE+AE KVNQVM+++RQ+Q+PLQC +
Sbjct: 73 VHVLQQFFRMDMEEATRVMLHVHQRGVGVCGIFSYEVAETKVNQVMDFARQNQHPLQCTL 132
Query: 136 EQ 137
E+
Sbjct: 133 EK 134
>gi|161898748|ref|YP_191042.2| ATP-dependent Clp protease adaptor protein ClpS [Gluconobacter
oxydans 621H]
Length = 143
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/132 (42%), Positives = 83/132 (62%), Gaps = 7/132 (5%)
Query: 13 VKRDGILALMSFIFMADSRMN------KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVN 66
+ R L S + +S + G + D + VR ++ R P +Y+VL++N
Sbjct: 13 LPRAAFPRLASRMG-PESPDSIPPHGPGNGDGDQDLDIGVVVRPRTRTRKPSMYKVLMLN 71
Query: 67 DNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQ 126
D+YTPMEFV+HVL+ FF K + A IML+VH +G+G CGV+ YE+AE KV QVM+ +RQ
Sbjct: 72 DDYTPMEFVVHVLERFFAKTRDEATSIMLQVHQRGVGICGVFTYEVAESKVTQVMDLARQ 131
Query: 127 HQYPLQCIMEQK 138
+Q+PLQC +E+
Sbjct: 132 NQHPLQCTIEKD 143
>gi|83310221|ref|YP_420485.1| ATP-dependent Clp protease adaptor protein ClpS [Magnetospirillum
magneticum AMB-1]
gi|123542818|sp|Q2W899|CLPS_MAGSA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|82945062|dbj|BAE49926.1| ATP-dependent Clp protease adaptor protein clpS [Magnetospirillum
magneticum AMB-1]
Length = 119
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 51/111 (45%), Positives = 72/111 (64%)
Query: 28 ADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
S D ++ K + P +Y+VL++ND+YTPMEFV+HVL+ FF K
Sbjct: 9 GMSENGNDKRDGDDGQTGVVIKTRPKTKKPSMYKVLMLNDDYTPMEFVVHVLERFFNKSR 68
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A +ML VH +G+G CGVY YE+AE KV QVM+ +RQ+Q+PLQC +E++
Sbjct: 69 EDATRVMLHVHTRGVGICGVYTYEVAETKVTQVMDLARQNQHPLQCTIEKE 119
>gi|254509526|ref|ZP_05121593.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacteraceae
bacterium KLH11]
gi|221533237|gb|EEE36225.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacteraceae
bacterium KLH11]
Length = 113
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + + + D+ V+ K + P LY+VLL+ND+YTPMEFV+HVL+ FF
Sbjct: 1 MRNDQWMMSDNPDEDDDTSILVQTRPKTQRPPLYKVLLLNDDYTPMEFVVHVLERFFGMT 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61 HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMERE 112
>gi|16126706|ref|NP_421270.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter
crescentus CB15]
gi|21542323|sp|Q9A5I0|CLPS_CAUCR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|13424016|gb|AAK24438.1| conserved hypothetical protein [Caulobacter crescentus CB15]
Length = 119
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 53/107 (49%), Positives = 69/107 (64%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
K+G K + P LYRVL++ND+YTPMEFV++VL+ FF K E A
Sbjct: 13 ERKQGGQGNGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDAT 72
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 73 RIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD 119
>gi|88703373|ref|ZP_01101089.1| ATP-dependent Clp protease adaptor protein ClpS [Congregibacter
litoralis KT71]
gi|88702087|gb|EAQ99190.1| ATP-dependent Clp protease adaptor protein ClpS [Congregibacter
litoralis KT71]
Length = 169
Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 64/104 (61%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
+K D+ + KV+ P LY+V+L+ND+YTPMEFV+ +L+ FF + E A
Sbjct: 62 DKNEEHGGDDGGLALQEAKPKVKRPPLYKVVLLNDDYTPMEFVVEILEVFFKMNREQATQ 121
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
IML VH G G CG+Y +IAE K QV Y+R HQ+PL C +E
Sbjct: 122 IMLTVHTHGKGVCGIYTKDIAETKSAQVNQYARDHQHPLLCEIE 165
>gi|94495922|ref|ZP_01302501.1| hypothetical protein SKA58_15107 [Sphingomonas sp. SKA58]
gi|94424614|gb|EAT09636.1| hypothetical protein SKA58_15107 [Sphingomonas sp. SKA58]
Length = 124
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 53/113 (46%), Positives = 80/113 (70%)
Query: 25 IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
+ MA + +G + R ++ + P LY+VL++ND+YTPMEFV+HVLQ+FF
Sbjct: 11 VNMAGRDQDDQGEGPGGPNVGIATRTRTRTKKPSLYKVLMLNDDYTPMEFVVHVLQSFFR 70
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
D E A +ML VH +G+G CG+++YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 71 MDMEEATRVMLHVHQRGVGICGIFSYEVAETKVNQVMDFARQNQHPLQCTLEK 123
>gi|209884899|ref|YP_002288756.1| ATP-dependent Clp protease adaptor protein ClpS [Oligotropha
carboxidovorans OM5]
gi|209873095|gb|ACI92891.1| ATP-dependent Clp protease adaptor protein ClpS [Oligotropha
carboxidovorans OM5]
Length = 179
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 2/124 (1%)
Query: 15 RDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEF 74
+ + + + M+ + G + R + + P LYRVL++ND+YTPMEF
Sbjct: 58 GESVRRAAATVRMSKNDDRPDGTSG--PGTSVITRTKPRAKRPSLYRVLILNDDYTPMEF 115
Query: 75 VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
V+HVL+ FF KD E A IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+
Sbjct: 116 VVHVLEKFFQKDVEAATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCV 175
Query: 135 MEQK 138
ME+K
Sbjct: 176 MEKK 179
>gi|146282647|ref|YP_001172800.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
stutzeri A1501]
gi|145570852|gb|ABP79958.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
stutzeri A1501]
Length = 167
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 3 LFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRV 62
+ + R + + + I + ++ D + +++ P +Y+V
Sbjct: 32 VHIYLAPAPRPRTVMRMHAFAQIRLTFNQDRPL-EDGDDASGLAVEEAKPQLKAPPMYKV 90
Query: 63 LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
++ ND+YTPM+FV+ VL+ F E A IML VH +G CGVY ++AE K QV
Sbjct: 91 VMFNDDYTPMDFVVEVLEGIFNHSREQATKIMLAVHTEGQAVCGVYTRDVAETKAMQVNQ 150
Query: 123 YSRQHQYPLQCIMEQK 138
Y+R+ Q+PL C +E+
Sbjct: 151 YARECQHPLLCEIEKD 166
>gi|254465322|ref|ZP_05078733.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
bacterium Y4I]
gi|206686230|gb|EDZ46712.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
bacterium Y4I]
Length = 121
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 48/114 (42%), Positives = 72/114 (63%)
Query: 25 IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
+ M + ++ D + K + P Y+VLL+ND+YTPMEFV+ VL+ FF
Sbjct: 7 LLMPLQPIMMTDHSDDDTEAGVLTKTRPKTKRPPRYKVLLLNDDYTPMEFVVMVLERFFG 66
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++E+AE KV QVM+++R+HQ+PLQC ME++
Sbjct: 67 MTHAQAFEIMLTVHKKGVAVVGVFSHEVAETKVGQVMDFARRHQHPLQCTMEKE 120
>gi|260426993|ref|ZP_05780972.1| ATP-dependent Clp protease adapter protein ClpS [Citreicella sp.
SE45]
gi|260421485|gb|EEX14736.1| ATP-dependent Clp protease adapter protein ClpS [Citreicella sp.
SE45]
Length = 120
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 51/107 (47%), Positives = 71/107 (66%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
+ D V+ K + P LY+VLL+ND+YTPMEFV+HVL+ FF H A
Sbjct: 14 NTPSFDDGDGSDADVVVQTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMSHAQAF 73
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 74 EIMLTVHKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMEKE 120
>gi|239832059|ref|ZP_04680388.1| ATP-dependent Clp protease adapter protein clpS [Ochrobactrum
intermedium LMG 3301]
gi|239824326|gb|EEQ95894.1| ATP-dependent Clp protease adapter protein clpS [Ochrobactrum
intermedium LMG 3301]
Length = 148
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 64/137 (46%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Query: 4 FDDGSMYHRVKRDGILALMSFIFMADSRM--NKKGIAEFDNCLDSEVRFSSKVRVPKLYR 61
DD R + ++ F+ D M G +N R K + P LYR
Sbjct: 12 HDDLHNRASWVRQMGIRVIGFMRHLDIVMQSKTDGGNGPENGTVVVTRTQPKTKKPSLYR 71
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
VLL+ND+YTPMEFV+HVLQ FF K+ + A IML VH+ G+GECGV+ YE+AE KV+QVM
Sbjct: 72 VLLLNDDYTPMEFVVHVLQRFFQKNRDDATRIMLHVHNHGVGECGVFTYEVAETKVSQVM 131
Query: 122 NYSRQHQYPLQCIMEQK 138
+++RQ+Q+PLQC+ME+K
Sbjct: 132 DFARQNQHPLQCVMEKK 148
>gi|295917937|gb|ADG60244.1| ATP-dependent Clp protease adaptor protein ClpS [uncultured
bacterium]
Length = 133
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 71/104 (68%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ + R +K + P Y+VL++ND+YTPMEFV+ VL+ FF D E A +
Sbjct: 29 GNDDGDGQGQVGLATRTRAKPKKPSQYKVLMLNDDYTPMEFVVMVLKRFFRMDLEQATRV 88
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH +G+G CG++ YE+AE KV+QVM+++RQ+Q+PLQC +E+
Sbjct: 89 MLHVHQRGVGVCGIFPYEVAETKVSQVMDFARQNQHPLQCTLEK 132
>gi|221235488|ref|YP_002517925.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter
crescentus NA1000]
gi|254763812|sp|B8GZM8|CLPS_CAUCN RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|220964661|gb|ACL96017.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter
crescentus NA1000]
Length = 109
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 53/107 (49%), Positives = 69/107 (64%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
K+G K + P LYRVL++ND+YTPMEFV++VL+ FF K E A
Sbjct: 3 ERKQGGQGNGVGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDAT 62
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 63 RIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD 109
>gi|260432448|ref|ZP_05786419.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416276|gb|EEX09535.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter
lacuscaerulensis ITI-1157]
Length = 113
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 54/112 (48%), Positives = 76/112 (67%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M +R G ++ D V+ K + P LY+VLL+ND+YTPMEFV+HVL+ FF
Sbjct: 1 MLTARWMMAGKSDDDGDTSILVQTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMS 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61 HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMERE 112
>gi|126732062|ref|ZP_01747864.1| ATP-dependent Clp protease adaptor protein ClpS [Sagittula stellata
E-37]
gi|126707351|gb|EBA06415.1| ATP-dependent Clp protease adaptor protein ClpS [Sagittula stellata
E-37]
Length = 116
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 49/107 (45%), Positives = 70/107 (65%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M + + K + P LY+VLL+ND+YTPMEFV+HVL+ FF H A
Sbjct: 10 MAADEPDDGQGETGVVTKTKPKTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMTHAQAF 69
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 70 EVMLTVHKKGVAVVGVFSHEIAETKVGQVMDFARRHQHPLQCTMEKE 116
>gi|89056376|ref|YP_511827.1| ATP-dependent Clp protease adaptor protein ClpS [Jannaschia sp.
CCS1]
gi|88865925|gb|ABD56802.1| ATP-dependent Clp protease adaptor protein ClpS [Jannaschia sp.
CCS1]
Length = 116
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 72/107 (67%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
+ D + + +K + P +Y+V+L+ND+YTPMEFV+HVL+ FF H A
Sbjct: 9 DEPDNVDGGDGDVSVATKTKTKTQRPPMYKVMLLNDDYTPMEFVVHVLERFFGITHSQAV 68
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH +G+ GV+++EIAE KV QVM+++R++Q+PLQC ME++
Sbjct: 69 EIMLVVHKKGLAVVGVFSHEIAETKVAQVMDFARRNQHPLQCTMEKE 115
>gi|295690174|ref|YP_003593867.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter segnis
ATCC 21756]
gi|295432077|gb|ADG11249.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter segnis
ATCC 21756]
Length = 109
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/107 (49%), Positives = 69/107 (64%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
K+G K + P LYRVL++ND+YTPMEFV++VL+ FF K E A
Sbjct: 3 ERKQGGQSNGAGSSVVTEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDAT 62
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 63 RIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD 109
>gi|296116796|ref|ZP_06835402.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
hansenii ATCC 23769]
gi|295976597|gb|EFG83369.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
hansenii ATCC 23769]
Length = 134
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 52/129 (40%), Positives = 72/129 (55%)
Query: 10 YHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNY 69
H + D +R + R P +Y+VL++ND+Y
Sbjct: 6 LHDRGTSPRVRAHGGNTPPRRPDGTGENGNDDGMAGVVIRTRPQTRKPAMYKVLMLNDDY 65
Query: 70 TPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQY 129
TPMEFV+HVL+ FF K E A IML VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+
Sbjct: 66 TPMEFVVHVLERFFQKSREEATDIMLHVHKRGVGVCGVFTYEVAETKVTQVMDLARQNQH 125
Query: 130 PLQCIMEQK 138
PLQC +E+
Sbjct: 126 PLQCTIEKD 134
>gi|329114968|ref|ZP_08243723.1| ATP-dependent Clp protease adapter protein ClpS [Acetobacter
pomorum DM001]
gi|326695411|gb|EGE47097.1| ATP-dependent Clp protease adapter protein ClpS [Acetobacter
pomorum DM001]
Length = 117
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 51/103 (49%), Positives = 73/103 (70%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
++ + VR K R P +Y+VL++ND+YTPMEFV++VL+ FF K+ E A IML
Sbjct: 15 DSSDDGADIGVVVRAKPKTRKPAMYKVLMLNDDYTPMEFVVYVLERFFQKNREEATDIML 74
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 75 NVHRRGVGVCGVFTYEVAETKVAQVMDLARQNQHPLQCTIEKD 117
>gi|258541379|ref|YP_003186812.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
3283-01]
gi|256632457|dbj|BAH98432.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
3283-01]
gi|256635514|dbj|BAI01483.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
3283-03]
gi|256638569|dbj|BAI04531.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
3283-07]
gi|256641623|dbj|BAI07578.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
3283-22]
gi|256644678|dbj|BAI10626.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
3283-26]
gi|256647733|dbj|BAI13674.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
3283-32]
gi|256650786|dbj|BAI16720.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256653777|dbj|BAI19704.1| Clp protease adaptor protein ClpS [Acetobacter pasteurianus IFO
3283-12]
Length = 125
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 51/103 (49%), Positives = 73/103 (70%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
++ + VR K R P +Y+VL++ND+YTPMEFV++VL+ FF K+ E A IML
Sbjct: 23 DSSDDGADIGVVVRAKPKTRKPAMYKVLMLNDDYTPMEFVVYVLERFFQKNREEATDIML 82
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 83 NVHRRGVGVCGVFTYEVAETKVAQVMDLARQNQHPLQCTIEKD 125
>gi|149913907|ref|ZP_01902439.1| ATP-dependent Clp protease, putative [Roseobacter sp. AzwK-3b]
gi|149812191|gb|EDM72022.1| ATP-dependent Clp protease, putative [Roseobacter sp. AzwK-3b]
Length = 107
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/107 (45%), Positives = 72/107 (67%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M + V+ +K + P LY+VLL+ND+YTPMEFV+ VL+ FF +H A
Sbjct: 1 MTGDDENGDEGDTSVVVKTRAKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMNHAQAF 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61 EVMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 107
>gi|148261528|ref|YP_001235655.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
cryptum JF-5]
gi|326405016|ref|YP_004285098.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
multivorum AIU301]
gi|146403209|gb|ABQ31736.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
cryptum JF-5]
gi|325051878|dbj|BAJ82216.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
multivorum AIU301]
Length = 118
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 53/116 (45%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 25 IFMADSRMNKKGIAEFDNC--LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
+ ++ M+ N R +K R P LY+VL++ND+YTPMEFV+HVL+ F
Sbjct: 3 VRTENTLMSGSDRRGTGNGLGTGVATRTRTKTRKPSLYKVLMLNDDYTPMEFVVHVLERF 62
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F K + A+ IML VH +G+G CGV+ YE+AE KV QVM+ +RQ Q+PLQC +E++
Sbjct: 63 FGKSRQEAERIMLHVHRRGVGVCGVFTYEVAETKVTQVMDLARQSQHPLQCTIEKE 118
>gi|77464259|ref|YP_353763.1| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter
sphaeroides 2.4.1]
gi|126463101|ref|YP_001044215.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
sphaeroides ATCC 17029]
gi|221640143|ref|YP_002526405.1| ATP-dependent Clp protease adapter protein clpS [Rhodobacter
sphaeroides KD131]
gi|77388677|gb|ABA79862.1| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter
sphaeroides 2.4.1]
gi|126104765|gb|ABN77443.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
sphaeroides ATCC 17029]
gi|221160924|gb|ACM01904.1| ATP-dependent Clp protease adapter protein clpS [Rhodobacter
sphaeroides KD131]
Length = 106
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 70/104 (67%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ + SK + P LY+VLL+ND+YTPMEFV+HVL+ FF H A IM
Sbjct: 3 DKTGGPGDDTSILTKTRSKTQRPPLYKVLLLNDDYTPMEFVVHVLERFFGLSHAQAFEIM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L VH +G+ GV+++E+AE KV QVM+++R+HQ+PLQC ME++
Sbjct: 63 LTVHKKGLAVVGVFSFEVAETKVAQVMDFARRHQHPLQCTMEKE 106
>gi|299135164|ref|ZP_07028355.1| ATP-dependent Clp protease adaptor protein ClpS [Afipia sp. 1NLS2]
gi|298590141|gb|EFI50345.1| ATP-dependent Clp protease adaptor protein ClpS [Afipia sp. 1NLS2]
Length = 228
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 58/109 (53%), Positives = 76/109 (69%), Gaps = 2/109 (1%)
Query: 32 MNKKG--IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
M+K + + + P LYRVL++ND+YTPMEFV+HVL+ FF KD E
Sbjct: 120 MSKDDGRPDGTGPGTSVITKTKPRTKRPSLYRVLILNDDYTPMEFVVHVLERFFQKDVEA 179
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A IML VHH GIGECG++ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 180 ATKIMLHVHHHGIGECGIFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 228
>gi|329851348|ref|ZP_08266105.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Asticcacaulis biprosthecum C19]
gi|328840194|gb|EGF89766.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Asticcacaulis biprosthecum C19]
Length = 161
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/91 (57%), Positives = 67/91 (73%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
V K + P LYRVL++ND+YTPMEFV++VL+ FF K E A IML VH G+G CGV
Sbjct: 71 VETKPKPQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQTGVGVCGV 130
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
Y YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 131 YTYEVAETKVAQVVDMARRHQHPLQCTMEKD 161
>gi|162149242|ref|YP_001603703.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787819|emb|CAP57417.1| putative ATP-dependent Clp protease adaptor protein clpS
[Gluconacetobacter diazotrophicus PAl 5]
Length = 146
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 23 SFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
++ + + + VR + R P +Y+VL++ND+YTPMEFV+HVL+ F
Sbjct: 32 PTRREGGNQDGQSDNPD-SPTIGVVVRTRPQTRKPAMYKVLMLNDDYTPMEFVVHVLERF 90
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F K + A IML VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 91 FQKSRDEATDIMLHVHKRGVGVCGVFTYEVAETKVTQVMDLARQNQHPLQCTIEKD 146
>gi|90419585|ref|ZP_01227495.1| ATP-dependent Clp protease adaptor protein [Aurantimonas
manganoxydans SI85-9A1]
gi|90336522|gb|EAS50263.1| ATP-dependent Clp protease adaptor protein [Aurantimonas
manganoxydans SI85-9A1]
Length = 122
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 60/104 (57%), Positives = 75/104 (72%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
K D + R K + P LYRVLL+ND+YTPMEFVIHVL+ FF KD E A I
Sbjct: 18 KDDDQVPDRGTEVITRTKPKTQKPSLYRVLLLNDDYTPMEFVIHVLERFFQKDREAATRI 77
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+ G+GECGV+ YE+AE KV QVM+++RQHQ+PLQC+ME+
Sbjct: 78 MLHVHNHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEK 121
>gi|288957528|ref|YP_003447869.1| ATP-dependent Clp protease adaptor protein [Azospirillum sp. B510]
gi|288909836|dbj|BAI71325.1| ATP-dependent Clp protease adaptor protein [Azospirillum sp. B510]
Length = 108
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 54/112 (48%), Positives = 73/112 (65%), Gaps = 4/112 (3%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
MADS V+ K + P +Y+VL++ND+YTPMEFV+ VL+ FF K
Sbjct: 1 MADSDKRGNDG----TNSGVVVKAKPKTKKPSMYKVLMLNDDYTPMEFVVLVLERFFSKS 56
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A IML VH +G+G CGV+ YE+AE KV QVM+++RQHQ+PLQC +E+
Sbjct: 57 REEATQIMLHVHRRGVGLCGVFTYEVAETKVTQVMDFARQHQHPLQCTLEKD 108
>gi|163744786|ref|ZP_02152146.1| ATP-dependent Clp protease, putative [Oceanibulbus indolifex
HEL-45]
gi|161381604|gb|EDQ06013.1| ATP-dependent Clp protease, putative [Oceanibulbus indolifex
HEL-45]
Length = 130
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/103 (44%), Positives = 71/103 (68%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ + + + K + P LY+V+L+ND++TPMEFV+ VL+ FF +H A IML
Sbjct: 27 NGPKDSDDTELLTKTRPKTKRPPLYKVMLLNDDFTPMEFVVLVLERFFGLNHAQAFEIML 86
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 87 TVHKKGLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 129
>gi|209545021|ref|YP_002277250.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532698|gb|ACI52635.1| ATP-dependent Clp protease adaptor protein ClpS [Gluconacetobacter
diazotrophicus PAl 5]
Length = 135
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 23 SFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
++ + + + VR + R P +Y+VL++ND+YTPMEFV+HVL+ F
Sbjct: 21 PTRREGGNQDGQSDNPD-SPTIGVVVRTRPQTRKPAMYKVLMLNDDYTPMEFVVHVLERF 79
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F K + A IML VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 80 FQKSRDEATDIMLHVHKRGVGVCGVFTYEVAETKVTQVMDLARQNQHPLQCTIEKD 135
>gi|182678642|ref|YP_001832788.1| ATP-dependent Clp protease adaptor protein ClpS [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182634525|gb|ACB95299.1| ATP-dependent Clp protease adaptor protein ClpS [Beijerinckia
indica subsp. indica ATCC 9039]
Length = 137
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 58/131 (44%), Positives = 84/131 (64%)
Query: 8 SMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
S R LA+ + + + + + + + + R ++ R P +YRVLL+ND
Sbjct: 7 SAIRRPPLLARLAVFAGLRIRGAGKDPQKGGDGGSGTAVITRPKTQTRRPSMYRVLLLND 66
Query: 68 NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
+YTPMEFV+ VL+ +F K E A IML VH G+GECG++ YE+AE KV QVM+Y+R+H
Sbjct: 67 DYTPMEFVVSVLKKYFNKGPEEATRIMLHVHQHGVGECGIFTYEVAETKVTQVMDYARKH 126
Query: 128 QYPLQCIMEQK 138
Q+PLQCIME+K
Sbjct: 127 QHPLQCIMEKK 137
>gi|87198523|ref|YP_495780.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
aromaticivorans DSM 12444]
gi|87134204|gb|ABD24946.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
aromaticivorans DSM 12444]
Length = 126
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 71/106 (66%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
D + + ++ + P ++VL++ND+YTPMEFV+ VL+ FF D E A
Sbjct: 20 DEDTRGPGGDEQIGIATKTRARPKKPSQFKVLMLNDDYTPMEFVVMVLKRFFNMDLEQAT 79
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH +G+G CG++ YEIAE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 80 RVMLHVHQRGVGVCGIFPYEIAETKVNQVMDFARQNQHPLQCTLEK 125
>gi|23502048|ref|NP_698175.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis
1330]
gi|62290083|ref|YP_221876.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
bv. 1 str. 9-941]
gi|82700008|ref|YP_414582.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
melitensis biovar Abortus 2308]
gi|148559927|ref|YP_001259088.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC
25840]
gi|225627638|ref|ZP_03785675.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str.
Cudo]
gi|237815589|ref|ZP_04594586.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
str. 2308 A]
gi|256369595|ref|YP_003107105.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella microti
CCM 4915]
gi|297248480|ref|ZP_06932198.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
bv. 5 str. B3196]
gi|23348003|gb|AAN30090.1| conserved hypothetical protein [Brucella suis 1330]
gi|62196215|gb|AAX74515.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82616109|emb|CAJ11148.1| Protein of unknown function DUF174 [Brucella melitensis biovar
Abortus 2308]
gi|148371184|gb|ABQ61163.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC
25840]
gi|225617643|gb|EEH14688.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str.
Cudo]
gi|237788887|gb|EEP63098.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
str. 2308 A]
gi|255999757|gb|ACU48156.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella microti
CCM 4915]
gi|297175649|gb|EFH34996.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
bv. 5 str. B3196]
Length = 136
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 62/137 (45%), Positives = 85/137 (62%), Gaps = 4/137 (2%)
Query: 2 YLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYR 61
Y+ Y D + ++ I G ++ R K R P LYR
Sbjct: 4 YILGQAEPYEWASSDRFMRRINTIMQG----KTNGGNGPESGTVVVTRTQPKTRKPSLYR 59
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
VLL+ND+YTPMEFV+HVLQ FF K+ + A IML VH+ G+GECGV+ YE+AE KV+QVM
Sbjct: 60 VLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGVFTYEVAETKVSQVM 119
Query: 122 NYSRQHQYPLQCIMEQK 138
+++RQ+Q+PLQC+ME+K
Sbjct: 120 DFARQNQHPLQCVMEKK 136
>gi|163733946|ref|ZP_02141388.1| ATP-dependent Clp protease, putative [Roseobacter litoralis Och
149]
gi|161393057|gb|EDQ17384.1| ATP-dependent Clp protease, putative [Roseobacter litoralis Och
149]
Length = 113
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 72/112 (64%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M +E D K + P LY+VLL+ND++TPMEFV+HVL+ FF +
Sbjct: 1 MHRDLYMMSDRSEDDGDTSILTATKPKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLN 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61 HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112
>gi|146276596|ref|YP_001166755.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
sphaeroides ATCC 17025]
gi|166214741|sp|A4WPY6|CLPS_RHOS5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|145554837|gb|ABP69450.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
sphaeroides ATCC 17025]
Length = 113
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 70/104 (67%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ + SK + P LY+VLL+ND+YTPMEFV+HVL+ FF H A IM
Sbjct: 10 DKTGGTGDDTSILTKTRSKTQRPPLYKVLLLNDDYTPMEFVVHVLERFFGLSHAQAFEIM 69
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L VH +G+ GV+++E+AE KV QVM+++R+HQ+PLQC ME++
Sbjct: 70 LTVHKKGLAVVGVFSFEVAETKVAQVMDFARRHQHPLQCTMEKE 113
>gi|17987098|ref|NP_539732.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
melitensis bv. 1 str. 16M]
gi|17982759|gb|AAL51996.1| protein ylja [Brucella melitensis bv. 1 str. 16M]
Length = 136
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 62/137 (45%), Positives = 84/137 (61%), Gaps = 4/137 (2%)
Query: 2 YLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYR 61
Y+ Y D + + I G ++ R K R P LYR
Sbjct: 4 YILGQAEPYEWASSDRFMRRFNTIMQG----KTNGGNGPESGTVVVTRTQPKTRKPSLYR 59
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
VLL+ND+YTPMEFV+HVLQ FF K+ + A IML VH+ G+GECGV+ YE+AE KV+QVM
Sbjct: 60 VLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGVFTYEVAETKVSQVM 119
Query: 122 NYSRQHQYPLQCIMEQK 138
+++RQ+Q+PLQC+ME+K
Sbjct: 120 DFARQNQHPLQCVMEKK 136
>gi|89069767|ref|ZP_01157103.1| ATP-dependent Clp protease adaptor protein clpS [Oceanicola
granulosus HTCC2516]
gi|89044713|gb|EAR50824.1| ATP-dependent Clp protease adaptor protein clpS [Oceanicola
granulosus HTCC2516]
Length = 113
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
+AD M + +V K + P LY+VL++ND+YTPMEFV+HVL+ FF
Sbjct: 2 LADHNMMADNDDDGGTDAGVKVETRPKTKRPPLYKVLILNDDYTPMEFVVHVLERFFGLS 61
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A +ML VH +G+ GV+++EIAE KV QVM+++++HQ+PLQC ME++
Sbjct: 62 HAQAFDLMLTVHKKGLAVVGVFSFEIAETKVAQVMDFAQRHQHPLQCTMEKE 113
>gi|296533024|ref|ZP_06895672.1| ATP-dependent Clp protease [Roseomonas cervicalis ATCC 49957]
gi|296266653|gb|EFH12630.1| ATP-dependent Clp protease [Roseomonas cervicalis ATCC 49957]
Length = 120
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 55/110 (50%), Positives = 75/110 (68%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
DS N G V+ + R P +Y+VL++ND+YTPMEFV+HVL+ FF K+ E
Sbjct: 11 DSGQNGNGQTGDGAATGVVVKTRPRTRKPAMYKVLMLNDDYTPMEFVVHVLERFFQKNRE 70
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A IML VH +G+G CGVY YE+AE KV QVM+ +RQ+Q+PLQC +E++
Sbjct: 71 EATRIMLHVHRRGVGVCGVYTYEVAETKVTQVMDLARQNQHPLQCTIEKE 120
>gi|150396335|ref|YP_001326802.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
medicae WSM419]
gi|150027850|gb|ABR59967.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
medicae WSM419]
Length = 117
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 60/116 (51%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 25 IFMADSRMNKKGI--AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
I M + R K + P LYRVLL+ND+YTPMEFVIH+L+ F
Sbjct: 2 IAMPVRMQQGSDGNGGGPNRGTSVITRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILERF 61
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F KD E A IML VH+ G+GECGV+ YE+AE KV QVM+++RQHQ+PLQC+ME+K
Sbjct: 62 FQKDREEATTIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK 117
>gi|254486976|ref|ZP_05100181.1| ATP-dependent Clp protease adaptor protein ClpS [Roseobacter sp.
GAI101]
gi|214043845|gb|EEB84483.1| ATP-dependent Clp protease adaptor protein ClpS [Roseobacter sp.
GAI101]
Length = 113
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 75/112 (66%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + G D+ D + K + P LY+V+L+ND++TPMEFV+HVL+ FF +
Sbjct: 1 MRLDDLMMAGKDRDDDETDLLTKTKPKTKRPPLYKVMLLNDDFTPMEFVVHVLERFFGLN 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61 HAQAFEIMLTVHKKGLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112
>gi|167647097|ref|YP_001684760.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter sp.
K31]
gi|254763813|sp|B0T2L1|CLPS_CAUSK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|167349527|gb|ABZ72262.1| ATP-dependent Clp protease adaptor protein ClpS [Caulobacter sp.
K31]
Length = 109
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 52/107 (48%), Positives = 69/107 (64%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
K+G K + P LYRVL++ND+YTPMEFV++VL+ FF K E A
Sbjct: 3 ERKQGGQNNGAGSSVITEVKPKTQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDAT 62
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH G+G CGV+ YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 63 RIMLHVHQHGVGVCGVFTYEVAETKVAQVIDSARRHQHPLQCTMEKD 109
>gi|110678604|ref|YP_681611.1| ATP-dependent Clp protease, putative [Roseobacter denitrificans OCh
114]
gi|123362148|sp|Q16AR8|CLPS_ROSDO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|109454720|gb|ABG30925.1| ATP-dependent Clp protease, putative [Roseobacter denitrificans OCh
114]
Length = 113
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 72/112 (64%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M +E D K + P LY+VLL+ND++TPMEFV+HVL+ FF +
Sbjct: 1 MHRDLHMMSDRSEDDGDTSILTATKPKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLN 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61 HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112
>gi|162452665|ref|YP_001615032.1| hypothetical protein sce4389 [Sorangium cellulosum 'So ce 56']
gi|161163247|emb|CAN94552.1| hypothetical protein sce4389 [Sorangium cellulosum 'So ce 56']
Length = 132
Score = 149 bits (378), Expect = 7e-35, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 14 KRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPME 73
+R G LA++ FM + ++ D D KV P+ Y+V+ ND+YT ME
Sbjct: 13 RRGGALAILPDGFMPNDPEERE-----DRQGDLATERERKVEKPRRYKVVFHNDDYTTME 67
Query: 74 FVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQC 133
FV+ VL FF++ A IML VHH+G G GVY ++AE KV QV +++++H PL+
Sbjct: 68 FVVLVLMKFFHRTETEATHIMLSVHHRGHGVAGVYTKDVAETKVAQVQDFAKEHGMPLRL 127
Query: 134 IMEQK 138
E +
Sbjct: 128 TAEPE 132
>gi|307294031|ref|ZP_07573875.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
chlorophenolicum L-1]
gi|306880182|gb|EFN11399.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobium
chlorophenolicum L-1]
Length = 112
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 53/111 (47%), Positives = 78/111 (70%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
MA + +G + R ++ + P LY+VL++ND+YTPMEFV+HVLQ FF D
Sbjct: 1 MAGRDQDDQGDGSGGPNVGIATRTRARTKKPSLYKVLMLNDDYTPMEFVVHVLQQFFRMD 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E A +ML VH +G+G CG+++YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 61 MEEATRVMLHVHQRGVGVCGIFSYEVAETKVNQVMDFARQNQHPLQCTLEK 111
>gi|163797886|ref|ZP_02191830.1| ATP-dependent Clp protease adaptor protein clpS [alpha
proteobacterium BAL199]
gi|159176848|gb|EDP61416.1| ATP-dependent Clp protease adaptor protein clpS [alpha
proteobacterium BAL199]
Length = 108
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 49/100 (49%), Positives = 70/100 (70%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
V+ K + P +Y+V+++ND+YTPMEFV+H+++ FF K E A IML VH
Sbjct: 9 GGRPTTGVVVKTRPKTKKPSMYKVIMLNDDYTPMEFVVHIIERFFAKSREEATQIMLHVH 68
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G+G CGVY YE+AE KV QVM+++RQHQ+PLQC +E+
Sbjct: 69 QRGVGICGVYTYEVAETKVTQVMDFARQHQHPLQCTLEKD 108
>gi|99082374|ref|YP_614528.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp.
TM1040]
gi|122397582|sp|Q1GDK0|CLPS_SILST RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|99038654|gb|ABF65266.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp.
TM1040]
Length = 113
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 48/112 (42%), Positives = 72/112 (64%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + + ++ L + + + P Y+VLL+ND+YTPMEFV+ VL+ FF +
Sbjct: 1 MLMQPLMMSDNPDDESDLGLLTKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLERFFGLN 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++E+AE KV QVM+Y+R+HQ+PLQC ME+
Sbjct: 61 HAQAFEIMLTVHKKGLAVVGVFSHEVAETKVAQVMDYARRHQHPLQCTMEKD 112
>gi|83855083|ref|ZP_00948613.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
NAS-14.1]
gi|83941607|ref|ZP_00954069.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
EE-36]
gi|83842926|gb|EAP82093.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
NAS-14.1]
gi|83847427|gb|EAP85302.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp.
EE-36]
Length = 113
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + G D+ D + K + P LY+V+L+ND++TPMEFV+ VL+ FF +
Sbjct: 1 MRLDDLMMAGKDRDDDETDLLTKTKPKTKRPPLYKVMLLNDDFTPMEFVVIVLERFFGLN 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61 HAQAFEIMLTVHKKGLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112
>gi|86357527|ref|YP_469419.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli CFN
42]
gi|218460323|ref|ZP_03500414.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli Kim
5]
gi|86281629|gb|ABC90692.1| ATP-dependent Clp protease adaptor protein [Rhizobium etli CFN 42]
Length = 117
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 59/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 21 LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
+ I M + +++ + R K + P LYRVLL+ND+YTPMEFVIH+L+
Sbjct: 2 IAKPIRMQN--DSERNGDNGNRGTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILE 59
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
FF KD E+A IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 60 RFFQKDRESATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117
>gi|85704460|ref|ZP_01035562.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp.
217]
gi|85670868|gb|EAQ25727.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp.
217]
Length = 112
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 52/112 (46%), Positives = 71/112 (63%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + G E V K + P LY+VLL+ND+YTPMEFV+ VL+ FF
Sbjct: 1 MIQHPITMAGPDEDAGDPAVVVATRPKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMS 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61 HAQAFEIMLTVHKKGLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112
>gi|190891596|ref|YP_001978138.1| ATP-dependent Clp protease adaptor protein [Rhizobium etli CIAT
652]
gi|190696875|gb|ACE90960.1| ATP-dependent Clp protease adaptor protein [Rhizobium etli CIAT
652]
Length = 117
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 59/118 (50%), Positives = 81/118 (68%), Gaps = 2/118 (1%)
Query: 21 LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
+ I M ++ + R K + P LYRVLL+ND+YTPMEFVIH+L+
Sbjct: 2 IAKPIRMQNNGERNGD--NGNRGTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILE 59
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
FF KD E+A IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 60 RFFQKDRESATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117
>gi|315498280|ref|YP_004087084.1| ATP-dependent clp protease adaptor protein clps [Asticcacaulis
excentricus CB 48]
gi|315416292|gb|ADU12933.1| ATP-dependent Clp protease adaptor protein ClpS [Asticcacaulis
excentricus CB 48]
Length = 132
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/103 (50%), Positives = 70/103 (67%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ + N + + K P LYRVL++ND+YTPMEFV++VL+ FF K E A IML
Sbjct: 30 DVDKPANAPFAVIDAKPKAAKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIML 89
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 90 HVHQTGVGVCGVYTYEVAETKVAQVVDMARRHQHPLQCTMEKD 132
>gi|197104769|ref|YP_002130146.1| hypothetical protein PHZ_c1303 [Phenylobacterium zucineum HLK1]
gi|238690132|sp|B4R947|CLPS_PHEZH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|196478189|gb|ACG77717.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 109
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/108 (49%), Positives = 71/108 (65%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
K+G + + K + P +YRVLL+ND+YTPMEFV++VL+ FF K E A
Sbjct: 2 SERKEGDSGAGVRSAVITQTKPKTQKPAMYRVLLLNDDYTPMEFVVYVLEQFFNKSREDA 61
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH G+G CGVY YE+AE KV QV++ +R+HQ+PLQC ME+
Sbjct: 62 TRIMLHVHQHGVGVCGVYTYEVAETKVAQVVDTARRHQHPLQCTMEKD 109
>gi|209964988|ref|YP_002297903.1| ATP-dependent Clp protease adaptor protein ClpS,putative
[Rhodospirillum centenum SW]
gi|259491250|sp|B6INJ3|CLPS_RHOCS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|209958454|gb|ACI99090.1| ATP-dependent Clp protease adaptor protein ClpS,putative
[Rhodospirillum centenum SW]
Length = 108
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
MADS + V+ K + P +Y+VL++ND+YTPMEFV+HVL+ FF K+
Sbjct: 1 MADSDKHGDEGP----STGVVVKAKPKTKKPSMYKVLMLNDDYTPMEFVVHVLERFFNKN 56
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A IML VH +G+G CGV+ YE+AE KV QVM+++RQHQ+PLQC +E+
Sbjct: 57 REEATRIMLHVHRRGVGVCGVFTYEVAETKVTQVMDFARQHQHPLQCTLEKD 108
>gi|154248457|ref|YP_001419415.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthobacter
autotrophicus Py2]
gi|154162542|gb|ABS69758.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthobacter
autotrophicus Py2]
Length = 124
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 55/108 (50%), Positives = 73/108 (67%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
R + + P LYRVLL+ND+YTPMEFV+HVL+ FF KD + A
Sbjct: 17 PDTPPRRGGDGPGTAVISRTKPQTKRPSLYRVLLLNDDYTPMEFVVHVLERFFNKDRDQA 76
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH+ G+GECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 77 NTIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 124
>gi|227821888|ref|YP_002825858.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
fredii NGR234]
gi|227340887|gb|ACP25105.1| ATP-dependent Clp protease adaptor protein ClpS 1 [Sinorhizobium
fredii NGR234]
Length = 117
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/116 (50%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 25 IFMA--DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
I M + ++ R K + P LYRVLL+ND+YTPMEFV+H+L+ F
Sbjct: 2 IAMPVRMQQGSEGNGGGPSRGTSVITRTKPKTKKPSLYRVLLLNDDYTPMEFVVHILERF 61
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F KD E A IML VH+ G+GECGV+ YE+AE KV QVM+++RQHQ+PLQC+ME+K
Sbjct: 62 FQKDREQATVIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK 117
>gi|15965239|ref|NP_385592.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
meliloti 1021]
gi|307309262|ref|ZP_07588930.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
meliloti BL225C]
gi|307317004|ref|ZP_07596445.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
meliloti AK83]
gi|21542320|sp|Q92Q63|CLPS1_RHIME RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
gi|15074419|emb|CAC46065.1| Putative ATP-dependent Clp protease adapter protein clpS 1
[Sinorhizobium meliloti 1021]
gi|306897092|gb|EFN27837.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
meliloti AK83]
gi|306900263|gb|EFN30880.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
meliloti BL225C]
Length = 117
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/116 (50%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 25 IFMA--DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
I M + ++ R K + P LYRVLL+ND+YTPMEFVIH+L+ F
Sbjct: 2 IAMPVRMQQGSEGDGGGPSRGTSVITRTKPKTKKPSLYRVLLLNDDYTPMEFVIHILERF 61
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F K+ E A IML VH+ G+GECGV+ YE+AE KV QVM+++RQHQ+PLQC+ME+K
Sbjct: 62 FQKNREEATVIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARQHQHPLQCVMEKK 117
>gi|153009350|ref|YP_001370565.1| ATP-dependent Clp protease adaptor protein ClpS [Ochrobactrum
anthropi ATCC 49188]
gi|151561238|gb|ABS14736.1| ATP-dependent Clp protease adaptor protein ClpS [Ochrobactrum
anthropi ATCC 49188]
Length = 124
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 58/108 (53%), Positives = 78/108 (72%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
+ G +N R K + P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A
Sbjct: 17 QSKTDGGNGPENGTVLVTRTQPKTKKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNQDDA 76
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 77 TRIMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 124
>gi|67460154|sp|Q5FTB0|CLPS_GLUOX RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|58001492|gb|AAW60386.1| Hypothetical protein GOX0608 [Gluconobacter oxydans 621H]
Length = 119
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/116 (44%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Query: 23 SFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
G + D + VR ++ R P +Y+VL++ND+YTPMEFV+HVL+ F
Sbjct: 6 PDSIPPHGP--GNGDGDQDLDIGVVVRPRTRTRKPSMYKVLMLNDDYTPMEFVVHVLERF 63
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F K + A IML+VH +G+G CGV+ YE+AE KV QVM+ +RQ+Q+PLQC +E+
Sbjct: 64 FAKTRDEATSIMLQVHQRGVGICGVFTYEVAESKVTQVMDLARQNQHPLQCTIEKD 119
>gi|149186435|ref|ZP_01864748.1| hypothetical protein ED21_23138 [Erythrobacter sp. SD-21]
gi|148830024|gb|EDL48462.1| hypothetical protein ED21_23138 [Erythrobacter sp. SD-21]
Length = 121
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 50/103 (48%), Positives = 72/103 (69%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
E D + + +K + P Y+VLL+ND+YTPMEFV+ VL+ FF D E A +M
Sbjct: 18 DDRREGDGQVAIATKTRAKPKKPSQYKVLLLNDDYTPMEFVVIVLKRFFRMDMEEATRVM 77
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L VH +G+G CG++ YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 78 LHVHQKGVGVCGIFPYEVAETKVNQVMDFARQNQHPLQCTLEK 120
>gi|149201108|ref|ZP_01878083.1| ATP-dependent Clp protease adaptor protein ClpS [Roseovarius sp.
TM1035]
gi|149145441|gb|EDM33467.1| ATP-dependent Clp protease adaptor protein ClpS [Roseovarius sp.
TM1035]
Length = 112
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/112 (46%), Positives = 71/112 (63%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + G E V K + P LY+VLL+ND+YTPMEFV+ VL+ FF
Sbjct: 1 MIQHPITMTGPKEDAGDPAVVVATRPKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMS 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++EIAE KV QVM+++R+HQ+PLQC ME++
Sbjct: 61 HAQAFEIMLTVHKKGLAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKE 112
>gi|92117938|ref|YP_577667.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
hamburgensis X14]
gi|91800832|gb|ABE63207.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
hamburgensis X14]
Length = 124
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 61/120 (50%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ M + G D + K + P LYRVL++ND+YTPMEFV+HV
Sbjct: 7 IRSAPAPRMGNDEDRTDGR--GDPAASVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHV 64
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF KD E A IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 65 LEKFFQKDVEAATEIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 124
>gi|84685218|ref|ZP_01013117.1| ATP-dependent Clp protease adaptor protein clpS [Maritimibacter
alkaliphilus HTCC2654]
gi|84666950|gb|EAQ13421.1| ATP-dependent Clp protease adaptor protein clpS [Rhodobacterales
bacterium HTCC2654]
Length = 118
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/107 (49%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
G D VR +K + P LY+VLL+ND++TPMEFV+ VL+ FF +H A
Sbjct: 14 DEPNGPPGGDTQ--LAVRPKAKSKRPPLYKVLLINDDFTPMEFVVMVLERFFSMNHAQAF 71
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH +G+ GV++YEIAE KVNQVM +RQ+Q+PLQC ME++
Sbjct: 72 EIMLTVHKKGLAVVGVFSYEIAETKVNQVMEMARQYQHPLQCTMERE 118
>gi|255264828|ref|ZP_05344170.1| ATP-dependent Clp protease adaptor protein ClpS [Thalassiobium sp.
R2A62]
gi|255107163|gb|EET49837.1| ATP-dependent Clp protease adaptor protein ClpS [Thalassiobium sp.
R2A62]
Length = 113
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 72/107 (67%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M D+ + V K + P LY+V+++ND+YTPMEFV+ VL+ FF +H +
Sbjct: 7 MMADDPGGDDSDVGLAVETRPKTKRPPLYKVMILNDDYTPMEFVVMVLERFFGMNHAQSF 66
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML VH +G+ GV++YEIAE KV QVM++++QHQ+PLQC ME++
Sbjct: 67 ELMLTVHKKGLAVVGVFSYEIAETKVAQVMDFAQQHQHPLQCTMEKE 113
>gi|302382575|ref|YP_003818398.1| ATP-dependent Clp protease adaptor protein ClpS [Brevundimonas
subvibrioides ATCC 15264]
gi|302193203|gb|ADL00775.1| ATP-dependent Clp protease adaptor protein ClpS [Brevundimonas
subvibrioides ATCC 15264]
Length = 110
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/112 (46%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M R ++ + K++ P LYRVL++ND+YTPMEFV++VL+ FF K
Sbjct: 1 MPTRRPGEQNGGG--QGAATITETKPKLQKPSLYRVLILNDDYTPMEFVVYVLERFFQKS 58
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A IML VH G+G CGV+ YE+AE KV QV+ +R+HQ+PLQC ME+
Sbjct: 59 REDATRIMLHVHQHGVGVCGVFTYEVAETKVAQVVETARRHQHPLQCTMEKD 110
>gi|126740638|ref|ZP_01756325.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseobacter sp.
SK209-2-6]
gi|126718439|gb|EBA15154.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseobacter sp.
SK209-2-6]
Length = 121
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 68/113 (60%)
Query: 26 FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
M + + D + K + P Y+VLL+ND+YTPMEFV+ VL+ FF
Sbjct: 8 PMPLQPVMMSQYPDDDADTGVLTKTRPKTKRPPRYKVLLLNDDYTPMEFVVMVLERFFSM 67
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+ +EIAE KV QVM+++ +HQ+PLQC ME++
Sbjct: 68 THAEAFDIMLTVHKKGLAVVGVFTHEIAETKVAQVMDFAGRHQHPLQCTMEKE 120
>gi|288941931|ref|YP_003444171.1| ATP-dependent Clp protease adaptor protein ClpS [Allochromatium
vinosum DSM 180]
gi|288897303|gb|ADC63139.1| ATP-dependent Clp protease adaptor protein ClpS [Allochromatium
vinosum DSM 180]
Length = 107
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 50/106 (47%), Positives = 67/106 (63%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M E S K+R P LY+VLL+ND+YTPMEFV+ VL+ FF + E A
Sbjct: 1 MTNPRSGEERESGLSVQEARPKLRRPPLYKVLLLNDDYTPMEFVVLVLEIFFGMNREKAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH +G+G CGV+ +IAE KV QV +Y+R +Q+PL C ME+
Sbjct: 61 QVMLHVHTRGVGVCGVFTKDIAETKVAQVNDYARGNQHPLMCTMEE 106
>gi|163760870|ref|ZP_02167949.1| ATP-dependent Clp protease adaptor protein ClpS [Hoeflea
phototrophica DFL-43]
gi|162281914|gb|EDQ32206.1| ATP-dependent Clp protease adaptor protein ClpS [Hoeflea
phototrophica DFL-43]
Length = 122
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 58/107 (54%), Positives = 75/107 (70%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
K G D R +V+ P LYRVLL+ND+YTPMEFVIHVL+ FF KD + A
Sbjct: 16 DKKTGDGGSDRGTSVITRTKPQVKKPSLYRVLLLNDDYTPMEFVIHVLERFFQKDRDQAT 75
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH+ G+GECGV+ YE+AE KV QVM+++R + +PLQC+ME+K
Sbjct: 76 RIMLHVHNHGVGECGVFTYEVAETKVTQVMDFARTNHHPLQCVMEKK 122
>gi|304321615|ref|YP_003855258.1| ATP-dependent Clp protease adaptor protein ClpS [Parvularcula
bermudensis HTCC2503]
gi|303300517|gb|ADM10116.1| ATP-dependent Clp protease adaptor protein ClpS [Parvularcula
bermudensis HTCC2503]
Length = 146
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 76/113 (67%)
Query: 26 FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
M M++ G + + + V+ K + P LY+VLL+ND+YTP EFV+ +L+ F+K
Sbjct: 34 PMRSINMSEDGDEKPGGNVATIVKEKPKAKRPSLYKVLLLNDDYTPQEFVVWLLEAVFHK 93
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H+ A IML VH+ G+G CGVY YE+AE KV QV+ +R++++PLQC ME++
Sbjct: 94 GHDEALRIMLHVHNHGVGICGVYTYEVAETKVAQVLELARRNEHPLQCTMERE 146
>gi|114704886|ref|ZP_01437794.1| ATP-dependent Clp protease adaptor protein ClpS [Fulvimarina pelagi
HTCC2506]
gi|114539671|gb|EAU42791.1| ATP-dependent Clp protease adaptor protein ClpS [Fulvimarina pelagi
HTCC2506]
Length = 135
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 61/129 (47%), Positives = 79/129 (61%)
Query: 9 MYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDN 68
+ + + LA S + R K++ P LYRVLL+ND+
Sbjct: 6 LMRKSHKLTALAPKSAPPFPLVMQGEDEEETRGPGTSVITRSKPKLQKPSLYRVLLLNDD 65
Query: 69 YTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQ 128
YTPMEFVIHVL+ FF KD E A IML VH G+GECGV+ YE+AE KV QVM+++RQHQ
Sbjct: 66 YTPMEFVIHVLERFFQKDREAATQIMLHVHRHGVGECGVFTYEVAETKVTQVMDFARQHQ 125
Query: 129 YPLQCIMEQ 137
+PLQC+ME+
Sbjct: 126 HPLQCVMEK 134
>gi|260574204|ref|ZP_05842209.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sp.
SW2]
gi|259023670|gb|EEW26961.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sp.
SW2]
Length = 117
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 48/117 (41%), Positives = 74/117 (63%)
Query: 22 MSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN 81
M+ + S + + + ++ P LY+VLL+ND+YTPMEFV+H+L+
Sbjct: 1 MTLRPLQMSGRMSDKPGGTEGDASTLTKTHTRTERPPLYKVLLLNDDYTPMEFVVHILER 60
Query: 82 FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
FF +H A IML VH +G+ GV+++E+AE KV QVM+++R+HQ+PLQC ME+
Sbjct: 61 FFGLNHAQAFEIMLTVHKKGLAVVGVFSFEVAETKVAQVMDFARRHQHPLQCTMEKD 117
>gi|254514303|ref|ZP_05126364.1| Sua5/YciO/YrdC/YwlC [gamma proteobacterium NOR5-3]
gi|219676546|gb|EED32911.1| Sua5/YciO/YrdC/YwlC [gamma proteobacterium NOR5-3]
Length = 134
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 43/88 (48%), Positives = 60/88 (68%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+++ P LY+V+L+ND+YTPMEFV+ VL+ FF + E A +ML VH QG G CG+Y
Sbjct: 43 EAKPQLKRPPLYKVVLLNDDYTPMEFVVEVLEVFFKMNREQATQVMLTVHTQGKGVCGIY 102
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
+IAE K QV ++R HQ+PL C +E
Sbjct: 103 TKDIAETKSAQVNQFARDHQHPLLCEIE 130
>gi|259417778|ref|ZP_05741697.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter sp.
TrichCH4B]
gi|259346684|gb|EEW58498.1| ATP-dependent Clp protease adaptor protein ClpS [Silicibacter sp.
TrichCH4B]
Length = 107
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 70/104 (67%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ ++ L + + + P Y+VLL+ND+YTPMEFV+ VL+ FF +H A IM
Sbjct: 3 SDNPDDESDLGVLTKTRPRTQRPPRYKVLLLNDDYTPMEFVVIVLERFFGLNHAQAFEIM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L VH +G+ GV+++E+AE KV QVM+Y+R+HQ+PLQC ME+
Sbjct: 63 LTVHKKGLAVVGVFSHEVAETKVAQVMDYARRHQHPLQCTMEKD 106
>gi|310815392|ref|YP_003963356.1| ATP-dependent Clp protease adaptor protein clpS [Ketogulonicigenium
vulgare Y25]
gi|308754127|gb|ADO42056.1| ATP-dependent Clp protease adaptor protein clpS [Ketogulonicigenium
vulgare Y25]
Length = 117
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 49/109 (44%), Positives = 70/109 (64%)
Query: 30 SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
S + G +N ++ K + P LY+V+L+ND+YTPMEFV+ VLQ FF D
Sbjct: 9 SSNDNDGTNTPENERGVALKTRPKTKRPPLYKVMLLNDDYTPMEFVVLVLQRFFSLDESR 68
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ IML VH +G+ V+ YE+AE KV QVM ++R++Q+PLQC MEQ+
Sbjct: 69 SVEIMLAVHTKGVAVVAVFPYEVAETKVAQVMEFARRNQHPLQCTMEQE 117
>gi|254294360|ref|YP_003060383.1| ATP-dependent Clp protease adaptor protein ClpS [Hirschia baltica
ATCC 49814]
gi|254042891|gb|ACT59686.1| ATP-dependent Clp protease adaptor protein ClpS [Hirschia baltica
ATCC 49814]
Length = 109
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 71/104 (68%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
D+ R +K + P LYRVL++ND++TPMEFV+ +L++FF K E A +M
Sbjct: 5 NTPTGPDDETGVATRTETKTKRPSLYRVLILNDDFTPMEFVVLILEHFFNKTREEATKVM 64
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L VH+ G+G CGV+ YE+AE KV QVM+ +R+ ++PLQC ME++
Sbjct: 65 LHVHNTGVGVCGVFTYEVAETKVAQVMDLARRSEHPLQCTMERE 108
>gi|222085850|ref|YP_002544381.1| ATP-dependent Clp protease adaptor protein [Agrobacterium
radiobacter K84]
gi|221723298|gb|ACM26454.1| ATP-dependent Clp protease adaptor protein [Agrobacterium
radiobacter K84]
Length = 117
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 57/110 (51%), Positives = 81/110 (73%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
+ +++ + R +K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E
Sbjct: 8 MQKDSERNGDNGNRGTSVITRTKAKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDLE 67
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+A IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 68 SATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117
>gi|121998183|ref|YP_001002970.1| ATP-dependent Clp protease adaptor protein ClpS [Halorhodospira
halophila SL1]
gi|158514017|sp|A1WWV6|CLPS_HALHL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|121589588|gb|ABM62168.1| ATP-dependent Clp protease adaptor protein ClpS [Halorhodospira
halophila SL1]
Length = 106
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/103 (44%), Positives = 67/103 (65%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ D ++ P +Y+V+L+ND+YTPM+FV+ VLQ FF KD A IM
Sbjct: 3 DEPNQDDPQGPEVEAAKPSLKQPPMYKVVLLNDDYTPMDFVVEVLQRFFNKDRSQATQIM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L VH +G G CGVY+ ++AE KV+QV +Y+R+H++PL C ME+
Sbjct: 63 LHVHTRGKGVCGVYSRDVAETKVSQVNDYAREHEHPLLCTMEE 105
>gi|84500364|ref|ZP_00998613.1| ATP-dependent Clp protease, adaptor protein ClpS [Oceanicola
batsensis HTCC2597]
gi|84391317|gb|EAQ03649.1| ATP-dependent Clp protease, adaptor protein ClpS [Oceanicola
batsensis HTCC2597]
Length = 121
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 49/90 (54%), Positives = 67/90 (74%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
K + P LY+VLL+ND+YTPMEFV+ VL+ FF +H A IML VH +G+ GV+
Sbjct: 32 ETRPKTKRPPLYKVLLLNDDYTPMEFVVAVLERFFGMNHAQAFEIMLTVHKKGVAVVGVF 91
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
++EIAE KV QVM+++RQHQ+PLQC ME++
Sbjct: 92 SHEIAETKVAQVMDFARQHQHPLQCTMEKE 121
>gi|260566297|ref|ZP_05836767.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
4 str. 40]
gi|261214163|ref|ZP_05928444.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
bv. 3 str. Tulya]
gi|261222336|ref|ZP_05936617.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
B1/94]
gi|261314110|ref|ZP_05953307.1| ATP-dependent Clp protease adapter protein clpS [Brucella
pinnipedialis M163/99/10]
gi|261317803|ref|ZP_05957000.1| ATP-dependent Clp protease adapter protein clpS [Brucella
pinnipedialis B2/94]
gi|261755135|ref|ZP_05998844.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
3 str. 686]
gi|261758359|ref|ZP_06002068.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
F5/99]
gi|265988834|ref|ZP_06101391.1| ATP-dependent Clp protease adapter protein clpS [Brucella
pinnipedialis M292/94/1]
gi|265991249|ref|ZP_06103806.1| ATP-dependent Clp protease adapter protein clpS [Brucella
melitensis bv. 1 str. Rev.1]
gi|265995085|ref|ZP_06107642.1| ATP-dependent Clp protease adapter protein clpS [Brucella
melitensis bv. 3 str. Ether]
gi|265999441|ref|ZP_05466371.2| ATP-dependent Clp protease adapter protein clpS [Brucella
melitensis bv. 2 str. 63/9]
gi|294852509|ref|ZP_06793182.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NVSL
07-0026]
gi|260155815|gb|EEW90895.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
4 str. 40]
gi|260915770|gb|EEX82631.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
bv. 3 str. Tulya]
gi|260920920|gb|EEX87573.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
B1/94]
gi|261297026|gb|EEY00523.1| ATP-dependent Clp protease adapter protein clpS [Brucella
pinnipedialis B2/94]
gi|261303136|gb|EEY06633.1| ATP-dependent Clp protease adapter protein clpS [Brucella
pinnipedialis M163/99/10]
gi|261738343|gb|EEY26339.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
F5/99]
gi|261744888|gb|EEY32814.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
3 str. 686]
gi|262766198|gb|EEZ11987.1| ATP-dependent Clp protease adapter protein clpS [Brucella
melitensis bv. 3 str. Ether]
gi|263002033|gb|EEZ14608.1| ATP-dependent Clp protease adapter protein clpS [Brucella
melitensis bv. 1 str. Rev.1]
gi|263093970|gb|EEZ17904.1| ATP-dependent Clp protease adapter protein clpS [Brucella
melitensis bv. 2 str. 63/9]
gi|264661031|gb|EEZ31292.1| ATP-dependent Clp protease adapter protein clpS [Brucella
pinnipedialis M292/94/1]
gi|294821098|gb|EFG38097.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NVSL
07-0026]
Length = 109
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 58/106 (54%), Positives = 77/106 (72%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
G ++ R K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A
Sbjct: 4 KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 63
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 64 IMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 109
>gi|225852667|ref|YP_002732900.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
melitensis ATCC 23457]
gi|256044825|ref|ZP_05447729.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
melitensis bv. 1 str. Rev.1]
gi|256113730|ref|ZP_05454534.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
melitensis bv. 3 str. Ether]
gi|260565575|ref|ZP_05836059.1| ATP-dependent Clp protease adapter protein clpS [Brucella
melitensis bv. 1 str. 16M]
gi|21542304|sp|Q8YHI3|CLPS_BRUME RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|254763811|sp|C0RJD8|CLPS_BRUMB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|225641032|gb|ACO00946.1| ATP-dependent Clp protease adapter protein clpS [Brucella
melitensis ATCC 23457]
gi|260151643|gb|EEW86737.1| ATP-dependent Clp protease adapter protein clpS [Brucella
melitensis bv. 1 str. 16M]
gi|326409188|gb|ADZ66253.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
melitensis M28]
Length = 116
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 58/106 (54%), Positives = 77/106 (72%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
G ++ R K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A
Sbjct: 11 KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 70
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 71 IMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 116
>gi|56698476|ref|YP_168851.1| ATP-dependent Clp protease, adaptor protein ClpS [Ruegeria pomeroyi
DSS-3]
gi|67460174|sp|Q5LMA7|CLPS_SILPO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|56680213|gb|AAV96879.1| ATP-dependent Clp protease, adaptor protein ClpS [Ruegeria pomeroyi
DSS-3]
Length = 113
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + DN ++ + + P LY+VLL+ND+YTPMEFV+HVL+ FF +
Sbjct: 1 MTAQLHMMSDKHDQDNDASVLLQTRPRTKRPPLYKVLLLNDDYTPMEFVVHVLERFFGMN 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A IML VH +G+ GV+++EIAE KV+ VM+++R+HQ+PLQC ME++
Sbjct: 61 HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVSLVMDFARRHQHPLQCTMEKE 112
>gi|220935008|ref|YP_002513907.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
sp. HL-EbGR7]
gi|219996318|gb|ACL72920.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
sp. HL-EbGR7]
Length = 106
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 53/106 (50%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M ++ D L E K++ P Y+V+L+ND+YTPMEFV+ VL++FF D E A
Sbjct: 1 MGEERKDTPDRGLAVE-EARPKLKPPPQYQVVLLNDDYTPMEFVVEVLESFFGMDREKAT 59
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IML VH +G G CG+Y +IAE KV QV +Y+RQHQ+PL C MEQ
Sbjct: 60 RIMLHVHTRGKGVCGIYPRDIAETKVAQVNDYARQHQHPLLCAMEQ 105
>gi|161619121|ref|YP_001593008.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella canis
ATCC 23365]
gi|163843434|ref|YP_001627838.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis ATCC
23445]
gi|189024321|ref|YP_001935089.1| Protein of unknown function DUF174 [Brucella abortus S19]
gi|254689393|ref|ZP_05152647.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
bv. 6 str. 870]
gi|254693877|ref|ZP_05155705.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
bv. 3 str. Tulya]
gi|254697528|ref|ZP_05159356.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
bv. 2 str. 86/8/59]
gi|254704457|ref|ZP_05166285.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis bv.
3 str. 686]
gi|254706649|ref|ZP_05168477.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
pinnipedialis M163/99/10]
gi|254710244|ref|ZP_05172055.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
pinnipedialis B2/94]
gi|254714240|ref|ZP_05176051.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
M644/93/1]
gi|254717676|ref|ZP_05179487.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
M13/05/1]
gi|254719232|ref|ZP_05181043.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp.
83/13]
gi|254730423|ref|ZP_05189001.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
bv. 4 str. 292]
gi|256031738|ref|ZP_05445352.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
pinnipedialis M292/94/1]
gi|256061251|ref|ZP_05451402.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella neotomae
5K33]
gi|256159904|ref|ZP_05457626.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
M490/95/1]
gi|256255138|ref|ZP_05460674.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella ceti
B1/94]
gi|256257639|ref|ZP_05463175.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus
bv. 9 str. C68]
gi|260168871|ref|ZP_05755682.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp.
F5/99]
gi|260546633|ref|ZP_05822372.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
NCTC 8038]
gi|260754911|ref|ZP_05867259.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
bv. 6 str. 870]
gi|260758128|ref|ZP_05870476.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
bv. 4 str. 292]
gi|260761954|ref|ZP_05874297.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
bv. 2 str. 86/8/59]
gi|260883923|ref|ZP_05895537.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
bv. 9 str. C68]
gi|261219517|ref|ZP_05933798.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
M13/05/1]
gi|261322012|ref|ZP_05961209.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
M644/93/1]
gi|261325259|ref|ZP_05964456.1| ATP-dependent Clp protease adapter protein clpS [Brucella neotomae
5K33]
gi|265984227|ref|ZP_06096962.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
83/13]
gi|265998300|ref|ZP_06110857.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
M490/95/1]
gi|306837981|ref|ZP_07470839.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NF
2653]
gi|306841893|ref|ZP_07474573.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO2]
gi|306844034|ref|ZP_07476629.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO1]
gi|37077259|sp|Q8G0C9|CLPS_BRUSU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|189082472|sp|A9M5I2|CLPS_BRUC2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|189082473|sp|B0CGW7|CLPS_BRUSI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238689379|sp|B2S618|CLPS_BRUA1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|161335932|gb|ABX62237.1| ATP-dependent Clp protease adaptor protein clpS [Brucella canis
ATCC 23365]
gi|163674157|gb|ABY38268.1| ATP-dependent Clp protease adaptor protein clpS [Brucella suis ATCC
23445]
gi|189019893|gb|ACD72615.1| Protein of unknown function DUF174 [Brucella abortus S19]
gi|260095683|gb|EEW79560.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
NCTC 8038]
gi|260668446|gb|EEX55386.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
bv. 4 str. 292]
gi|260672386|gb|EEX59207.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
bv. 2 str. 86/8/59]
gi|260675019|gb|EEX61840.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
bv. 6 str. 870]
gi|260873451|gb|EEX80520.1| ATP-dependent Clp protease adapter protein clpS [Brucella abortus
bv. 9 str. C68]
gi|260924606|gb|EEX91174.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
M13/05/1]
gi|261294702|gb|EEX98198.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
M644/93/1]
gi|261301239|gb|EEY04736.1| ATP-dependent Clp protease adapter protein clpS [Brucella neotomae
5K33]
gi|262552768|gb|EEZ08758.1| ATP-dependent Clp protease adapter protein clpS [Brucella ceti
M490/95/1]
gi|264662819|gb|EEZ33080.1| ATP-dependent Clp protease adapter protein clpS [Brucella sp.
83/13]
gi|306275789|gb|EFM57513.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO1]
gi|306288023|gb|EFM59425.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. BO2]
gi|306406905|gb|EFM63126.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella sp. NF
2653]
Length = 116
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 58/106 (54%), Positives = 77/106 (72%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
G ++ R K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A
Sbjct: 11 KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 70
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 71 IMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 116
>gi|114569835|ref|YP_756515.1| ATP-dependent Clp protease adaptor protein ClpS [Maricaulis maris
MCS10]
gi|122316182|sp|Q0AQ60|CLPS_MARMM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|114340297|gb|ABI65577.1| ATP-dependent Clp protease adaptor protein ClpS [Maricaulis maris
MCS10]
Length = 109
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 51/107 (47%), Positives = 65/107 (60%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
K + + + P LYRVLL+ND+YTPMEFV+ VL F K E A
Sbjct: 3 ERKHDDTGVEEGTGLATKTRPATKKPSLYRVLLLNDDYTPMEFVVEVLARIFRKSPEDAA 62
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH G+G CGVY YE+AE KV QVM+ +R+ Q+PLQC ME++
Sbjct: 63 RIMLHVHQNGVGMCGVYTYEVAETKVAQVMDAARRAQHPLQCTMEKE 109
>gi|110633725|ref|YP_673933.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium sp.
BNC1]
gi|110284709|gb|ABG62768.1| ATP-dependent Clp protease adaptor protein ClpS [Chelativorans sp.
BNC1]
Length = 133
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 9/135 (6%)
Query: 4 FDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVL 63
+ + R L M+ R +K + P LYRVL
Sbjct: 8 HGNIGIGERKMPGDALR------MSRGDDEGNSTG---RGTAVITRTRTKTKKPSLYRVL 58
Query: 64 LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
L+ND+YTPMEFV+HVL+ FF KD E A IML VH+ G+GECG+Y +E+AE KV+QVM++
Sbjct: 59 LLNDDYTPMEFVVHVLERFFQKDREAATMIMLHVHNHGVGECGIYTFEVAETKVSQVMDF 118
Query: 124 SRQHQYPLQCIMEQK 138
+RQHQ+PLQC+ME+K
Sbjct: 119 ARQHQHPLQCVMEKK 133
>gi|254283858|ref|ZP_04958826.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
proteobacterium NOR51-B]
gi|219680061|gb|EED36410.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
proteobacterium NOR51-B]
Length = 132
Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 16 DGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFV 75
+ A +S + + + D + K++ P LYRV+L+ND+YTPMEFV
Sbjct: 6 NAATARLSDPRPRATGDDAERGPGRDEGVAIAP-AKPKLKRPPLYRVILLNDDYTPMEFV 64
Query: 76 IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
+ VL+ FF + + A +ML VH QG G CG+Y +IAE K QV +++HQ+PL C +
Sbjct: 65 VEVLERFFSMNRDKATQVMLAVHTQGKGVCGIYPRDIAETKAAQVNQCAKEHQHPLLCEV 124
Query: 136 EQ 137
E
Sbjct: 125 EP 126
>gi|75675888|ref|YP_318309.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
winogradskyi Nb-255]
gi|74420758|gb|ABA04957.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
winogradskyi Nb-255]
Length = 136
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 60/129 (46%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query: 12 RVKRDGILALMSFIFMADSRMNKKGIAEF--DNCLDSEVRFSSKVRVPKLYRVLLVNDNY 69
+ +L + + ++ A D + +K + P LYRVL++ND+Y
Sbjct: 8 QTPETSVLPVSNNRSAPRMSEDEDDHAGGRGDPAASVITKVRTKTKRPNLYRVLILNDDY 67
Query: 70 TPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQY 129
TPMEFV+HVL+ FF KD E A IML VHH GIGECGV+ YE+AE KV QVM+++R+HQ+
Sbjct: 68 TPMEFVVHVLEKFFQKDLEAATQIMLHVHHHGIGECGVFTYEVAETKVTQVMDFARKHQH 127
Query: 130 PLQCIMEQK 138
PLQC+ME+K
Sbjct: 128 PLQCVMEKK 136
>gi|329889200|ref|ZP_08267543.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Brevundimonas diminuta ATCC 11568]
gi|328844501|gb|EGF94065.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Brevundimonas diminuta ATCC 11568]
Length = 109
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
+ G K++ P LYRVL++ND+YTPMEFVI+VL+ FF K E A
Sbjct: 2 PNRRPGEQGGGAGAAVVTETKPKLQRPSLYRVLILNDDYTPMEFVIYVLERFFQKSREDA 61
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH G+G CGV+ YE+AE KV QV+ +R+HQ+PLQC ME+
Sbjct: 62 TRIMLHVHQHGVGVCGVFTYEVAETKVAQVVETARRHQHPLQCTMEKD 109
>gi|292492310|ref|YP_003527749.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
halophilus Nc4]
gi|291580905|gb|ADE15362.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
halophilus Nc4]
Length = 107
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/106 (47%), Positives = 69/106 (65%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M K E + + K++ P +Y+V+++ND+YTPMEFV+ VLQ FF D E A
Sbjct: 1 MGKIDPDEENEGGFAVDTAKPKLKRPPMYKVVMLNDDYTPMEFVVEVLQTFFAMDREKAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IM +VH +G G CGV+ YEIAE KV QV YS HQ+PL+C++E+
Sbjct: 61 RIMWQVHTEGKGICGVFTYEIAETKVAQVNEYSLNHQHPLKCVLEK 106
>gi|114799620|ref|YP_759751.1| ATP-dependent Clp protease, adaptor protein ClpS [Hyphomonas
neptunium ATCC 15444]
gi|123028220|sp|Q0C3E2|CLPS_HYPNA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|114739794|gb|ABI77919.1| ATP-dependent Clp protease, adaptor protein ClpS [Hyphomonas
neptunium ATCC 15444]
Length = 118
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/94 (53%), Positives = 69/94 (73%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
D K + P LYRVLL+ND+YTPMEFV+ +L+ FF + E A IML VH +G+G
Sbjct: 24 DLATETRIKTKKPSLYRVLLLNDDYTPMEFVVFILERFFNRSREQATRIMLHVHQKGVGL 83
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CGVY YE+AE KV QV++ +R+H++PLQC+ME++
Sbjct: 84 CGVYTYEVAETKVAQVLDLARRHEHPLQCVMEKE 117
>gi|209549170|ref|YP_002281087.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209534926|gb|ACI54861.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 116
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/118 (51%), Positives = 81/118 (68%), Gaps = 3/118 (2%)
Query: 21 LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
+ I M + E N R K + P LYRVLL+ND+YTPMEFVIH+L+
Sbjct: 2 IAKPIRMQNDSDRN---GENGNRTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILE 58
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
FF KD E+A IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 59 RFFQKDRESATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 116
>gi|119503235|ref|ZP_01625319.1| substrate modulator for ClpAP, directs protease activity towards
aggregated proteins [marine gamma proteobacterium
HTCC2080]
gi|119460881|gb|EAW41972.1| substrate modulator for ClpAP, directs protease activity towards
aggregated proteins [marine gamma proteobacterium
HTCC2080]
Length = 116
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
M +M A+ D+ D V K++ P L++V+L+ND+YTPMEFV+ +L+++F
Sbjct: 1 MYSWQMGPPDKADRDDEGDLAVAPAKPKLKRPPLFQVVLLNDDYTPMEFVVEILESYFRL 60
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E A IML VH +G G CGVY +IAE K QV Y+R +PL C +E
Sbjct: 61 GREQATQIMLMVHTKGKGVCGVYPRDIAESKATQVNTYARDSGHPLLCEVEP 112
>gi|327480905|gb|AEA84215.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
stutzeri DSM 4166]
Length = 122
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 18 ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
+ + I + ++ D + +++ P +Y+V++ ND+YTPM+FV+
Sbjct: 2 RMHAFAQIRLTFNQDRPL-EDGDDASGLAVEEAKPQLKAPPMYKVVMFNDDYTPMDFVVE 60
Query: 78 VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VL+ F E A IML VH +G CGVY ++AE K QV Y+R+ Q+PL C +E+
Sbjct: 61 VLEGIFNHSREQATKIMLAVHTEGQAVCGVYTRDVAETKAMQVNQYARECQHPLLCEIEK 120
Query: 138 K 138
Sbjct: 121 D 121
>gi|254786019|ref|YP_003073448.1| ATP-dependent Clp protease adaptor protein ClpS [Teredinibacter
turnerae T7901]
gi|237686070|gb|ACR13334.1| Sua5/YciO/YrdC/YwlC [Teredinibacter turnerae T7901]
Length = 124
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 66/102 (64%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ + + +++ P +Y+V+L+ND+YTPMEFV+HVL++FF D E A +M
Sbjct: 15 DDVDSGADSGLALQEAKPRLKKPPMYKVVLLNDDYTPMEFVVHVLESFFNMDREKATHVM 74
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
L VH +G CGVY+ ++AE K QV ++RQ+++PL C +E
Sbjct: 75 LTVHTKGKAVCGVYSRDVAETKAMQVNQFARQNEHPLLCEIE 116
>gi|86749515|ref|YP_486011.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris HaA2]
gi|86572543|gb|ABD07100.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris HaA2]
Length = 132
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/132 (46%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 9 MYHRVKRDGILALMSFIFMADSRMNKKG--IAEFDNCLDSEVRFSSKVRVPKLYRVLLVN 66
M R + + +RM G + K + P LYRVL++N
Sbjct: 1 MLQRFSSFDSVPASVGLSYRATRMAGDGGRAGSGSPTTSVITKVKPKTKRPNLYRVLILN 60
Query: 67 DNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQ 126
D+YTPMEFV+HVL+ FF D E A +ML VHH GIGECGV+ YEIAE KV QVM+++R+
Sbjct: 61 DDYTPMEFVVHVLEKFFQMDIEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARK 120
Query: 127 HQYPLQCIMEQK 138
HQ+PLQC+ME+K
Sbjct: 121 HQHPLQCVMEKK 132
>gi|262376116|ref|ZP_06069346.1| substrate modulator for ClpAP [Acinetobacter lwoffii SH145]
gi|262308717|gb|EEY89850.1| substrate modulator for ClpAP [Acinetobacter lwoffii SH145]
Length = 137
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
D D V+ + +++ P LY V+L+ND+YTPMEFVI +LQ +F +
Sbjct: 26 HISPRLANEPSEDGDSDLAVQTAPPELKRPPLYAVVLLNDDYTPMEFVIEILQQYFAMNL 85
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML VH++G G GVY +IAE K NQV NY+R +PL C +E K
Sbjct: 86 DQATQVMLTVHYEGKGVAGVYPRDIAETKANQVNNYARSQGHPLLCQIEPK 136
>gi|146341455|ref|YP_001206503.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
substrate specificity [Bradyrhizobium sp. ORS278]
gi|146194261|emb|CAL78283.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
substrate specificity [Bradyrhizobium sp. ORS278]
Length = 110
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/110 (54%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
+ NK G + K + P LYRVL++ND+YTPMEFV+ VL+ FF KD E
Sbjct: 2 SNNDNKSGGPGG-PATSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVLVLEKFFNKDVE 60
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 61 AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110
>gi|85374864|ref|YP_458926.1| hypothetical protein ELI_10185 [Erythrobacter litoralis HTCC2594]
gi|84787947|gb|ABC64129.1| hypothetical protein ELI_10185 [Erythrobacter litoralis HTCC2594]
Length = 127
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 70/95 (73%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + +K + P Y+VL++ND+YTPMEFV+ VL+ FF D E A +ML VH +G+
Sbjct: 32 DVGVATKTRAKPKKPSQYKVLMLNDDYTPMEFVVMVLKRFFKMDLEQATRVMLHVHQKGV 91
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG++ YE+AE KVNQVM+++RQ+Q+PLQC +E+
Sbjct: 92 GVCGIFPYEVAETKVNQVMDFARQNQHPLQCTLEK 126
>gi|241204496|ref|YP_002975592.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240858386|gb|ACS56053.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 118
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/118 (51%), Positives = 81/118 (68%), Gaps = 3/118 (2%)
Query: 21 LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
+ I M + A N R K + P LYRVLL+ND+YTPMEFVIH+L+
Sbjct: 4 IAKPIRMQNDSERNGDNA---NRTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILE 60
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
FF KD E+A IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 61 RFFQKDRESATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 118
>gi|218533142|ref|YP_002423958.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
chloromethanicum CM4]
gi|218525445|gb|ACK86030.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
chloromethanicum CM4]
Length = 131
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
Query: 25 IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
+ A + + R + + P LYRVLL+ND+YTPMEFV+HV++ FF
Sbjct: 20 VRAASTPRSPGDDDRS--GTAIITRTKPRAKRPSLYRVLLLNDDYTPMEFVVHVVERFFN 77
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
K H+ A IM+ VHH G+GECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 78 KSHDDAYQIMMHVHHNGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 131
>gi|104781332|ref|YP_607830.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
entomophila L48]
gi|95110319|emb|CAK15026.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
entomophila L48]
Length = 124
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 68/121 (56%)
Query: 18 ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
+ + + F D + + E D + ++ P +Y+V+L ND+YTPM+FV+
Sbjct: 3 VPSEIRLTFNQDRPQSNEDGHEDDGSGLAVQEAKPILQAPPMYKVVLFNDDYTPMDFVVE 62
Query: 78 VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VL+ FF + E A IML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 63 VLETFFNLNRELATKIMLTVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEK 122
Query: 138 K 138
Sbjct: 123 D 123
>gi|294676717|ref|YP_003577332.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
capsulatus SB 1003]
gi|294475537|gb|ADE84925.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter
capsulatus SB 1003]
Length = 117
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/93 (50%), Positives = 70/93 (75%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
V+ + + P +Y+V+L+ND+YTPMEFV+H+L+ FF H A IML VH +G+
Sbjct: 25 LAVKTAPRTARPPMYKVMLLNDDYTPMEFVVHILERFFGMTHAQAFEIMLTVHKKGLAVV 84
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GVY++E+AE KV+QVM++SR+HQ+PLQC ME++
Sbjct: 85 GVYSFEVAETKVSQVMDFSRRHQHPLQCTMEKE 117
>gi|39936211|ref|NP_948487.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris CGA009]
gi|39650066|emb|CAE28589.1| DUF174 [Rhodopseudomonas palustris CGA009]
Length = 132
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 59/131 (45%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 8 SMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
S+ H + + MA + + + P LYRVL++ND
Sbjct: 5 SLSHSAAGQAGDRINRPLAMAGD---GGRSGPSTPSTSVITKTKPRTKRPNLYRVLILND 61
Query: 68 NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
+YTPMEFV+HVL+ FF D E A +ML VHH GIGECGV+ YEIAE KV QVM+++R+H
Sbjct: 62 DYTPMEFVVHVLEKFFQMDVEAATKVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKH 121
Query: 128 QYPLQCIMEQK 138
Q+PLQC+ME+K
Sbjct: 122 QHPLQCVMEKK 132
>gi|163737216|ref|ZP_02144634.1| ATP-dependent Clp protease adaptor protein ClpS [Phaeobacter
gallaeciensis BS107]
gi|163740373|ref|ZP_02147767.1| ATP-dependent Clp protease, adaptor protein ClpS [Phaeobacter
gallaeciensis 2.10]
gi|161386231|gb|EDQ10606.1| ATP-dependent Clp protease, adaptor protein ClpS [Phaeobacter
gallaeciensis 2.10]
gi|161389820|gb|EDQ14171.1| ATP-dependent Clp protease adaptor protein ClpS [Phaeobacter
gallaeciensis BS107]
Length = 113
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 48/112 (42%), Positives = 72/112 (64%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + + ++ D L + K + P Y+VLL+ND+YTPMEFV+ VL+ FF
Sbjct: 1 MLPTPVMMSDHSDDDTDLGVLTKTRPKTQRPPRYKVLLLNDDYTPMEFVVMVLERFFNMT 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H A +ML VH +G+ GV+++EIAE KV QVM+++ +HQ+PLQC ME++
Sbjct: 61 HAEAFEVMLTVHKKGVAVVGVFSHEIAETKVGQVMDFAHRHQHPLQCTMEKE 112
>gi|316933620|ref|YP_004108602.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris DX-1]
gi|315601334|gb|ADU43869.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris DX-1]
Length = 132
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ + + P LYRVL++ND+YTPMEFV+HVL+ FF D E A +ML VHH
Sbjct: 35 TPSTSVITKTKPRTKRPSLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATQVMLHVHHH 94
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 95 GIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 132
>gi|158423218|ref|YP_001524510.1| ATP-dependent Clp protease adaptor protein [Azorhizobium
caulinodans ORS 571]
gi|158330107|dbj|BAF87592.1| ATP-dependent Clp protease adaptor protein [Azorhizobium
caulinodans ORS 571]
Length = 131
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 58/117 (49%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
Query: 22 MSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN 81
A ++ R +V+ P LYRVLL+ND+YTPM+FV+HVL+
Sbjct: 16 APQPRAAGDDDKQRRGPGG-PGTAVITRTKPQVKRPNLYRVLLLNDDYTPMDFVVHVLER 74
Query: 82 FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
FF K E A IML VHH G+GECGVY YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 75 FFSKSREEANTIMLHVHHHGVGECGVYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 131
>gi|148256120|ref|YP_001240705.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
substrate specificity [Bradyrhizobium sp. BTAi1]
gi|146408293|gb|ABQ36799.1| ATP-dependent Clp protease adaptor protein ClpS, modulator of ClpA
substrate specificity [Bradyrhizobium sp. BTAi1]
Length = 110
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 60/110 (54%), Positives = 76/110 (69%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
S + K + K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E
Sbjct: 1 MSNNDNKSGGTGGPVTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFNKDVE 60
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 61 AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110
>gi|188991659|ref|YP_001903669.1| hypothetical protein xccb100_2265 [Xanthomonas campestris pv.
campestris str. B100]
gi|167733419|emb|CAP51620.1| unnamed protein product [Xanthomonas campestris pv. campestris]
Length = 169
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 49/129 (37%), Positives = 70/129 (54%)
Query: 9 MYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDN 68
++ G + + + + + + +V P Y+VLL+ND+
Sbjct: 40 NRRKLCGRGAKSSNAEGAGPYNGRMPRKTSHEHDHGLVVETSKPEVAPPPRYQVLLLNDD 99
Query: 69 YTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQ 128
YTPM+FV+ VLQ FF D E A +ML VH +G G CGVY+ E+AE KV QV +SR +Q
Sbjct: 100 YTPMDFVVTVLQQFFNLDLERATQVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQ 159
Query: 129 YPLQCIMEQ 137
+PL C MEQ
Sbjct: 160 HPLLCTMEQ 168
>gi|27380265|ref|NP_771794.1| ATP-dependent Clp protease adaptor protein ClpS [Bradyrhizobium
japonicum USDA 110]
gi|27353429|dbj|BAC50419.1| yljA [Bradyrhizobium japonicum USDA 110]
Length = 130
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 59/114 (51%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
Query: 25 IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
M++ + + K + P LYRVL++ND+YTPMEFV+HVL+ FF
Sbjct: 19 PRMSNDENRSGSPTGPNT--SVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQ 76
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
KD E A IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 77 KDVEAATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 130
>gi|83945502|ref|ZP_00957849.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanicaulis
alexandrii HTCC2633]
gi|83851078|gb|EAP88936.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanicaulis
alexandrii HTCC2633]
Length = 108
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
S K + D V+ ++ + P +Y+VLL+ND+YTPMEFVI VL F+K E
Sbjct: 1 MSEPKKPDLP--DQETGVTVKPRARTKRPSMYKVLLLNDDYTPMEFVIEVLVRIFHKGQE 58
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A IML VH G+G CGV+ YE+AE KV QVM+ +R+ Q+PLQC ME+
Sbjct: 59 DATRIMLHVHQHGVGVCGVFTYEVAETKVAQVMDAARRAQHPLQCTMEKD 108
>gi|170747222|ref|YP_001753482.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
radiotolerans JCM 2831]
gi|170653744|gb|ACB22799.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
radiotolerans JCM 2831]
Length = 128
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 61/128 (47%), Positives = 80/128 (62%), Gaps = 10/128 (7%)
Query: 11 HRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYT 70
HR R + A S D R N R + + P LYRVLL+ND+YT
Sbjct: 11 HRPARIAVTASGSRAPGGDDRSN----------TAIITRTKPRTKRPSLYRVLLLNDDYT 60
Query: 71 PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
PMEFV+ V++ FF K HE A IM+ VH G+GECGV+ YE+AE KV QVM+++R+HQ+P
Sbjct: 61 PMEFVVLVVERFFNKSHEDAYHIMMHVHQNGVGECGVFTYEVAETKVTQVMDFARKHQHP 120
Query: 131 LQCIMEQK 138
LQC+ME+K
Sbjct: 121 LQCVMEKK 128
>gi|84516587|ref|ZP_01003946.1| ATP-dependent Clp protease, adaptor protein ClpS [Loktanella
vestfoldensis SKA53]
gi|84509623|gb|EAQ06081.1| ATP-dependent Clp protease, adaptor protein ClpS [Loktanella
vestfoldensis SKA53]
Length = 118
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 70/107 (65%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M L + K + P +Y+VL++ND++TPMEFV+HVL+ FF H A
Sbjct: 12 MMADKEDRDGGNLGVALETKPKTKRPPMYKVLILNDDFTPMEFVVHVLERFFGLSHAQAF 71
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML VH +G+ GV+++EIAE KV QVM+++++HQ+PLQC ME++
Sbjct: 72 ELMLTVHKKGVAVVGVFSHEIAETKVAQVMDFAQRHQHPLQCTMEKE 118
>gi|261752476|ref|ZP_05996185.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
5 str. 513]
gi|261742229|gb|EEY30155.1| ATP-dependent Clp protease adapter protein clpS [Brucella suis bv.
5 str. 513]
Length = 109
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 57/106 (53%), Positives = 77/106 (72%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
G ++ R K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A
Sbjct: 4 KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 63
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH+ G+GECG++ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 64 IMLHVHNHGVGECGMFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 109
>gi|330503290|ref|YP_004380159.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
mendocina NK-01]
gi|328917576|gb|AEB58407.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
mendocina NK-01]
Length = 120
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ + E D+ + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHASSQIRLTFNQDHPA-EHEDDSSGIAVQESKPALQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A IML VH +G CGVY +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LETFFGMNRELATKIMLAVHTEGRAVCGVYTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|192360778|ref|YP_001983029.1| ATP-dependent Clp protease adaptor protein ClpS [Cellvibrio
japonicus Ueda107]
gi|190686943|gb|ACE84621.1| ATP-dependent Clp protease adaptor protein clpS [Cellvibrio
japonicus Ueda107]
Length = 125
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 64/104 (61%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
+ A + + V K++ P +Y+V+L+ND+YTPM+FV+H+L+ FF E A
Sbjct: 14 DNDDSAGESDGGLAVVTAKPKLKRPSMYKVVLLNDDYTPMDFVVHILETFFSMTREKATH 73
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
+ML VH G CG+Y +IAE K QV YSR++Q+PL C +E
Sbjct: 74 VMLTVHVHGKAVCGIYTRDIAETKAAQVNQYSRENQHPLLCEIE 117
>gi|254701912|ref|ZP_05163740.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis bv.
5 str. 513]
Length = 116
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 57/106 (53%), Positives = 77/106 (72%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
G ++ R K R P LYRVLL+ND+YTPMEFV+HVLQ FF K+ + A
Sbjct: 11 KTNGGNGPESGTVVVTRTQPKTRKPSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATR 70
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH+ G+GECG++ YE+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 71 IMLHVHNHGVGECGMFTYEVAETKVSQVMDFARQNQHPLQCVMEKK 116
>gi|146307417|ref|YP_001187882.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
mendocina ymp]
gi|166214739|sp|A4XUY4|CLPS_PSEMY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|145575618|gb|ABP85150.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
mendocina ymp]
Length = 120
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ + E D+ + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHASSQIRLTFNQDHPA-EHEDDSSGIAVQESKPALQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A IML VH +G CGVY +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LETFFGMNRELATKIMLTVHTEGRAVCGVYTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|229591241|ref|YP_002873360.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
fluorescens SBW25]
gi|259491249|sp|C3JY63|CLPS_PSEFS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|229363107|emb|CAY50115.1| ATP-dependent clp protease adaptor protein [Pseudomonas fluorescens
SBW25]
Length = 122
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEV-RFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
+ +S I + ++ + D V ++ P +Y+V+L ND+YTPM+FV+
Sbjct: 1 MHAISQIRLTFNQDRPDHEHDDDGSAGIAVQEAKPALQAPPMYKVVLFNDDYTPMDFVVE 60
Query: 78 VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VL+ FF + E A +ML VH +G CGV+ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 61 VLEVFFNLNRELATKVMLAVHTEGRAVCGVFTRDIAETKAMQVNQYARESQHPLLCEIEK 120
Query: 138 K 138
Sbjct: 121 D 121
>gi|298291485|ref|YP_003693424.1| ATP-dependent Clp protease adaptor protein ClpS [Starkeya novella
DSM 506]
gi|296927996|gb|ADH88805.1| ATP-dependent Clp protease adaptor protein ClpS [Starkeya novella
DSM 506]
Length = 123
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 57/110 (51%), Positives = 78/110 (70%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
+ ++ + R +V+ P LYRVLL+ND+YTPMEFV+HVL++FF K+ E
Sbjct: 14 MADEERRRRGDNAPGTAVITRTKPQVKRPSLYRVLLLNDDYTPMEFVVHVLEHFFTKNRE 73
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A IML VH G+GECGVY YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 74 EATQIMLHVHQHGVGECGVYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 123
>gi|304391581|ref|ZP_07373523.1| ATP-dependent Clp protease adapter protein ClpS 1 [Ahrensia sp.
R2A130]
gi|303295810|gb|EFL90168.1| ATP-dependent Clp protease adapter protein ClpS 1 [Ahrensia sp.
R2A130]
Length = 130
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 54/97 (55%), Positives = 71/97 (73%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
N R K++ P LYRVLL+ND++TPMEFVI +L FF + E A +ML VH G
Sbjct: 34 NDTGVITRTKPKLKKPSLYRVLLLNDDFTPMEFVIEILARFFQMNMEQATQVMLHVHQNG 93
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+GECGVY YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 94 VGECGVYTYEVAETKVTQVMDHARKHQHPLQCVMEKK 130
>gi|188584527|ref|YP_001927972.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
populi BJ001]
gi|179348025|gb|ACB83437.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
populi BJ001]
Length = 131
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
Query: 25 IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
+ A + N R + + P LYRVLL+ND+YTPMEFV+HV++ FF
Sbjct: 20 VRAASTPRNPGDDDRS--GTAIITRTKPRAKRPSLYRVLLLNDDYTPMEFVVHVVERFFN 77
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
K HE A IM+ VHH G+GECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 78 KSHEDAYQIMMHVHHNGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 131
>gi|241762133|ref|ZP_04760216.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|260753723|ref|YP_003226616.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|283856536|ref|YP_163460.2| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
subsp. mobilis ZM4]
gi|67460185|sp|Q5NLR1|CLPS_ZYMMO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|241373383|gb|EER62983.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|258553086|gb|ACV76032.1| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|283775543|gb|AAV90349.2| ATP-dependent Clp protease adaptor protein ClpS [Zymomonas mobilis
subsp. mobilis ZM4]
Length = 107
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 75/106 (70%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ + D+ + R + + + P+ Y+VL++ND+YTPMEFV+ LQ FF E A
Sbjct: 1 MSGDKDFDKDSDVTVITRTTPQTKKPQPYKVLMLNDDYTPMEFVVLCLQRFFRMGIEDAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML+VH +G+G CGV+ YE+AE KVNQV++++RQHQ+PLQC +E+
Sbjct: 61 KVMLQVHQRGVGICGVFTYEVAETKVNQVVDFARQHQHPLQCTLEK 106
>gi|222148871|ref|YP_002549828.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
vitis S4]
gi|221735857|gb|ACM36820.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 117
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 58/117 (49%), Positives = 78/117 (66%)
Query: 22 MSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN 81
M I + + R K + P LYRVLL+ND+YTPMEFVIH+L+
Sbjct: 1 MEMIAQPIVMQAQGNNDGPNRGTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILER 60
Query: 82 FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
FF KD E A +ML VH+ G+GECGV+ YE+AE KV+QVM+++RQH++PLQC+ME+K
Sbjct: 61 FFQKDREAATLVMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQHEHPLQCVMEKK 117
>gi|312961674|ref|ZP_07776172.1| ATP-dependent Clp protease adapter protein [Pseudomonas fluorescens
WH6]
gi|311283933|gb|EFQ62516.1| ATP-dependent Clp protease adapter protein [Pseudomonas fluorescens
WH6]
Length = 122
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
+ S I + ++ + D V+ ++ P +Y+V+L ND+YTPM+FV+
Sbjct: 1 MHAFSQIRLTFNQDRPDHEHDDDGSAGIAVKEAKPALQAPPMYKVVLFNDDYTPMDFVVE 60
Query: 78 VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VL+ FF + E A +ML VH +G CGV+ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 61 VLEVFFNLNRELATKVMLAVHTEGRAVCGVFTRDIAETKAMQVNQYARESQHPLLCEIEK 120
Query: 138 K 138
Sbjct: 121 D 121
>gi|116251968|ref|YP_767806.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
leguminosarum bv. viciae 3841]
gi|115256616|emb|CAK07704.1| putative ATP-dependent CLP protease adaptor protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 109
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + A N R K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD
Sbjct: 1 MQNDSERNGDNA---NRTSVITRTKPKTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKD 57
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E+A IML VH+ G+GECG++ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 58 RESATRIMLHVHNHGVGECGIFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 109
>gi|53804154|ref|YP_114226.1| ATP-dependent Clp protease adaptor protein ClpS [Methylococcus
capsulatus str. Bath]
gi|67460232|sp|Q607H2|CLPS_METCA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|53757915|gb|AAU92206.1| ATP-dependent Clp protease adaptor protein ClpS [Methylococcus
capsulatus str. Bath]
Length = 106
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 45/102 (44%), Positives = 66/102 (64%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ KV+ P LY+V+L+ND++TPMEFV+HVL FF + E A +ML
Sbjct: 4 ESDHGSGDGLALQEAQPKVKRPPLYKVMLLNDDFTPMEFVVHVLMLFFGMNEEKATQVML 63
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH +G+G CGV++ ++AE KV QV ++RQ+Q+PL C ME+
Sbjct: 64 HVHTRGVGVCGVFSKDVAETKVQQVNAHARQNQHPLLCTMEE 105
>gi|119384493|ref|YP_915549.1| ATP-dependent Clp protease adaptor protein ClpS [Paracoccus
denitrificans PD1222]
gi|119374260|gb|ABL69853.1| ATP-dependent Clp protease adaptor protein ClpS [Paracoccus
denitrificans PD1222]
Length = 105
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 46/103 (44%), Positives = 68/103 (66%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
++ V+ + + P +Y+VLL+ND++TPMEFV+HVL+ F +H A IML
Sbjct: 3 NRPGDREEVELGVKTRPRTQRPPMYKVLLLNDDFTPMEFVVHVLERLFNMNHAQAIEIML 62
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH +GI GV+++EIAE KV QVM +R+ Q+PLQC ME++
Sbjct: 63 TVHRKGIAVVGVFSHEIAETKVAQVMELARRQQHPLQCTMEKE 105
>gi|217976934|ref|YP_002361081.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocella
silvestris BL2]
gi|217502310|gb|ACK49719.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocella
silvestris BL2]
Length = 169
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 61/138 (44%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 5 DDGSMYHRVKRDGI----LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY 60
D R D D + K G R ++ R P +Y
Sbjct: 32 DPVRPQQRADHDQADPIRARFAPLAAGKDDKEKKGGDGGAGQGTAVITRTKTQTRRPSMY 91
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
RVLL+ND+YTPMEFV+ VL+ +F K E A IML VH G+GECGV+ YE+AE KV QV
Sbjct: 92 RVLLLNDDYTPMEFVVAVLKKYFNKGPEEATRIMLHVHQHGVGECGVFTYEVAETKVTQV 151
Query: 121 MNYSRQHQYPLQCIMEQK 138
M+Y+R+HQ+PLQCIME+K
Sbjct: 152 MDYARKHQHPLQCIMEKK 169
>gi|332187681|ref|ZP_08389416.1| ATP-dependent Clp protease adaptor ClpS family protein
[Sphingomonas sp. S17]
gi|332012247|gb|EGI54317.1| ATP-dependent Clp protease adaptor ClpS family protein
[Sphingomonas sp. S17]
Length = 118
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 46/103 (44%), Positives = 69/103 (66%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ N L R ++ + P YRVL++ND+YTPMEFV+ LQ FF + A +M
Sbjct: 15 DHGDDEGNGLGVATRTRARTKQPTPYRVLMLNDDYTPMEFVVLCLQRFFRMSMDDATRVM 74
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L VH +G+G CGV++YE+AE KV QV++++R +Q+PLQC +E+
Sbjct: 75 LHVHQRGVGVCGVFSYEVAETKVAQVIDFARANQHPLQCTLEK 117
>gi|77165887|ref|YP_344412.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
oceani ATCC 19707]
gi|254433959|ref|ZP_05047467.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
oceani AFC27]
gi|76884201|gb|ABA58882.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
oceani ATCC 19707]
gi|207090292|gb|EDZ67563.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
oceani AFC27]
Length = 107
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 70/106 (66%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M K + E + + K++ P LY+V+++ND+YTPMEFV+ VLQ FF D E A
Sbjct: 1 MGKINLDEDNEGGFAVDTAKPKLKRPPLYKVVMLNDDYTPMEFVVKVLQAFFAMDREKAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+M +VH +G G CGV+ YEIAE K +QV YS HQ+PL+C++E+
Sbjct: 61 RVMWQVHTEGKGICGVFTYEIAETKASQVNEYSMNHQHPLKCVLER 106
>gi|325292723|ref|YP_004278587.1| ATP-dependent Clp protease adapter protein clpS 1 [Agrobacterium
sp. H13-3]
gi|325060576|gb|ADY64267.1| ATP-dependent Clp protease adapter protein clpS 1 [Agrobacterium
sp. H13-3]
Length = 117
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 58/98 (59%), Positives = 74/98 (75%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ R K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E A IML VH
Sbjct: 20 NRGTSVITRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATRIMLHVHQH 79
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+GECGV+ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 80 GVGECGVFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117
>gi|297564863|ref|YP_003683835.1| ATP-dependent Clp protease adaptor protein ClpS [Meiothermus
silvanus DSM 9946]
gi|296849312|gb|ADH62327.1| ATP-dependent Clp protease adaptor protein ClpS [Meiothermus
silvanus DSM 9946]
Length = 100
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 50/99 (50%), Positives = 69/99 (69%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+ D++ + S+ R P Y+VLL+ND+YTPM+FV+ VL FF K A IML+VHH
Sbjct: 2 SNPAGDTKTKTQSRTRTPPQYKVLLLNDDYTPMDFVVEVLMRFFRKSELEATRIMLQVHH 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G+G CGVY +EIAE KV+QVM + + +PLQCIME +
Sbjct: 62 EGVGVCGVYPFEIAETKVHQVMEAAAEEGHPLQCIMEPE 100
>gi|83593445|ref|YP_427197.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodospirillum
rubrum ATCC 11170]
gi|83576359|gb|ABC22910.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodospirillum
rubrum ATCC 11170]
Length = 137
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 71/93 (76%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
V+ K + P +YRVL++ND+YTPMEFV+HVL+ FF K HE A IML VH +G+G C
Sbjct: 45 VVVKAKPKTKKPSMYRVLMLNDDYTPMEFVVHVLERFFGKTHEEATNIMLHVHQRGVGLC 104
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GVY YE+AE KV+QVM+ +R+ Q+PLQC +E++
Sbjct: 105 GVYTYEVAETKVSQVMDLARRSQHPLQCTLEKE 137
>gi|50084541|ref|YP_046051.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
ADP1]
gi|49530517|emb|CAG68229.1| substrate modulator for ClpAP, directs protease activity towards
aggregated proteins [Acinetobacter sp. ADP1]
Length = 137
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ D V+ + +++ P LY V+L+ND+YTPM+FVI +LQ +F +
Sbjct: 26 HINPRLGDSQSDEPEGDIAVQTAPPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFALNL 85
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML VH++G G GVY +IAE K NQV NY+R +PL C +E K
Sbjct: 86 DQATQVMLTVHYEGKGVAGVYPRDIAETKANQVNNYARSQGHPLLCQIEPK 136
>gi|15888689|ref|NP_354370.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
tumefaciens str. C58]
gi|24638402|sp|Q8UFN4|CLPS1_AGRT5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
gi|15156427|gb|AAK87155.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
tumefaciens str. C58]
Length = 117
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 58/98 (59%), Positives = 74/98 (75%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ R K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E A IML VH
Sbjct: 20 NRGTSVITRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATRIMLHVHQH 79
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+GECGV+ YE+AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 80 GVGECGVFTYEVAETKVSQVMDFARQHQHPLQCVMEKK 117
>gi|163854197|ref|YP_001642240.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
extorquens PA1]
gi|240141657|ref|YP_002966137.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
extorquens AM1]
gi|254564165|ref|YP_003071260.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
extorquens DM4]
gi|163665802|gb|ABY33169.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
extorquens PA1]
gi|240011634|gb|ACS42860.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
extorquens AM1]
gi|254271443|emb|CAX27458.1| ATP-dependent Clp protease adaptor protein clpS [Methylobacterium
extorquens DM4]
Length = 112
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 55/112 (49%), Positives = 78/112 (69%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + + + + R + + P LYRVLL+ND+YTPMEFV+HV++ FF K
Sbjct: 1 MRAASTPRSPGDDDRSGTAIITRTKPRAKRPSLYRVLLLNDDYTPMEFVVHVVERFFNKS 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H+ A IM+ VHH G+GECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 61 HDDAYQIMMHVHHNGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 112
>gi|91977524|ref|YP_570183.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris BisB5]
gi|91683980|gb|ABE40282.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris BisB5]
Length = 109
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 56/101 (55%), Positives = 73/101 (72%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
+ + K + P LYRVL++ND+YTPMEFV+HVL+ FF D E A +ML V
Sbjct: 9 GTGNPATSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATQVMLHV 68
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
HH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 69 HHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 109
>gi|91774864|ref|YP_544620.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacillus
flagellatus KT]
gi|91708851|gb|ABE48779.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacillus
flagellatus KT]
Length = 128
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 9/130 (6%)
Query: 8 SMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
+ H + + L MA + I + + ++ P +Y+V+L+ND
Sbjct: 7 NPTHFRLENFYIRLKIDQRMASIKHQDNLIEKTG---------KANIKPPSMYKVILLND 57
Query: 68 NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
+YTPMEFV+ V+Q FF+K+ E A IML+VH +G G CGVY + IAE KVNQV++Y+R+H
Sbjct: 58 DYTPMEFVVDVMQRFFHKNREQATQIMLQVHTEGAGVCGVYPHGIAETKVNQVISYAREH 117
Query: 128 QYPLQCIMEQ 137
Q+PLQC ME+
Sbjct: 118 QHPLQCTMEE 127
>gi|262370290|ref|ZP_06063616.1| substrate modulator for ClpAP [Acinetobacter johnsonii SH046]
gi|262314632|gb|EEY95673.1| substrate modulator for ClpAP [Acinetobacter johnsonii SH046]
Length = 138
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 30 SRMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
S + D V+ + +++ P LY V+L+ND+YTPM+FVI +LQ +F + +
Sbjct: 28 SPRLSNDEPNEEENGDVAVQTAPPELKRPPLYAVVLMNDDYTPMDFVIEILQQYFALNLD 87
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A +ML VH++G G GVY +IAE K NQV NY+R +PL C +E K
Sbjct: 88 QATQVMLTVHYEGKGVAGVYPRDIAETKANQVNNYARSQGHPLLCQIEPK 137
>gi|149928085|ref|ZP_01916332.1| ATP-dependent Clp protease adaptor protein ClpS [Limnobacter sp.
MED105]
gi|149823171|gb|EDM82408.1| ATP-dependent Clp protease adaptor protein ClpS [Limnobacter sp.
MED105]
Length = 134
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 49/110 (44%), Positives = 70/110 (63%)
Query: 28 ADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ ++ +N + K ++P +Y+V+L+ND+YTPMEFV+ VLQ FF K
Sbjct: 24 PLRSDYNEVMSSQNNPSTVLESQTQKAKLPPMYQVVLLNDDYTPMEFVVIVLQKFFGKGR 83
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E A IMLKVH +G G CGVY +IA KV V +++QHQ+PLQC+ME+
Sbjct: 84 EQATQIMLKVHREGKGVCGVYPKDIASTKVEMVCGFAKQHQHPLQCVMEE 133
>gi|42522812|ref|NP_968192.1| hypothetical protein Bd1289 [Bdellovibrio bacteriovorus HD100]
gi|67460291|sp|Q6MNG7|CLPS_BDEBA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|39574008|emb|CAE79185.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 114
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/113 (40%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
Query: 27 MADSR-MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
M +++ + ++ V+ K+ PK+Y+V+L+ND+YTPM+FV+ VL+ FF K
Sbjct: 1 MGNNKKDSNSNYPFASPEGEAGVQLVPKLDTPKMYKVILLNDDYTPMDFVVLVLRRFFAK 60
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A IML VH +G G GV++ EIAEMKV QV +++ +QYPL+ +E++
Sbjct: 61 TEEQATEIMLDVHKKGAGVAGVFSLEIAEMKVMQVNQFAQLNQYPLKSTLEEE 113
>gi|254475794|ref|ZP_05089180.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp. R11]
gi|214030037|gb|EEB70872.1| ATP-dependent Clp protease adaptor protein ClpS [Ruegeria sp. R11]
Length = 107
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/104 (44%), Positives = 68/104 (65%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
++ D + K + P Y+VLL+ND+YTPMEFV+ VL+ FF H A +M
Sbjct: 3 SDHSDDDTEFGVLTKTRPKTQRPPRYKVLLLNDDYTPMEFVVMVLERFFNMTHAEAFEVM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L VH +G+ GV+++EIAE KV QVM+++ +HQ+PLQC ME++
Sbjct: 63 LTVHKKGVAVVGVFSHEIAETKVGQVMDFAHRHQHPLQCTMEKE 106
>gi|153871083|ref|ZP_02000343.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. PS]
gi|152072449|gb|EDN69655.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. PS]
Length = 106
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 47/96 (48%), Positives = 69/96 (71%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
E SK++ P +Y+V+L+ND+YTPM+FV+H+L+ FF + + A IML+VH +G
Sbjct: 10 EDDVIEEEQKSKLKRPPMYKVILLNDDYTPMDFVVHILEIFFGMEKDLATHIMLQVHTKG 69
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG Y+ EIAE KV QV NY+R++Q+PL CI+E+
Sbjct: 70 KGICGTYSREIAETKVAQVNNYARENQHPLLCILEK 105
>gi|70731245|ref|YP_260986.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
fluorescens Pf-5]
gi|123654447|sp|Q4K9U7|CLPS_PSEF5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|68345544|gb|AAY93150.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
fluorescens Pf-5]
Length = 120
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ +S I + ++ + + + D+ + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAISQIRLTFNQD-RPDLHDDDSAGLAVQEAKPALQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A +ML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LEMFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|330810450|ref|YP_004354912.1| ATP-dependent Clp protease adapter protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327378558|gb|AEA69908.1| ATP-dependent Clp protease adapter protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 120
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 23 SFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
S I + ++ + + + D+ + ++ P +Y+V+L ND+YTPM+FV+ VL+ F
Sbjct: 5 SQIRLTFNQD-RPDLHDDDSAGIAVQEAKPALQAPPMYKVVLFNDDYTPMDFVVEVLEVF 63
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F + E A +ML VH +G CGV+ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 64 FNLNRELATKVMLAVHTEGRAVCGVFTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|37077096|sp|Q89JW5|CLPS2_BRAJA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
Length = 110
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 59/110 (53%), Positives = 76/110 (69%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
S + + + K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E
Sbjct: 1 MSNDENRSGSPTGPNTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDVE 60
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A IML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 61 AATKIMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 110
>gi|255320456|ref|ZP_05361637.1| substrate modulator for ClpAP, directs protease activity towards
aggregated protein [Acinetobacter radioresistens SK82]
gi|262378352|ref|ZP_06071509.1| substrate modulator for ClpAP [Acinetobacter radioresistens SH164]
gi|255302428|gb|EET81664.1| substrate modulator for ClpAP, directs protease activity towards
aggregated protein [Acinetobacter radioresistens SK82]
gi|262299637|gb|EEY87549.1| substrate modulator for ClpAP [Acinetobacter radioresistens SH164]
Length = 137
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ + V+ + +++ P LY V+L+ND+YTPM+FVI +LQ +F +
Sbjct: 26 HLNPRLSDSQNDEADGEIAVKPAPPQLKKPPLYAVVLLNDDYTPMDFVIEILQQYFALNL 85
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML VH++G G G+Y +IAE K NQV NY+R +PL C +E K
Sbjct: 86 DQATQVMLTVHYEGKGVAGIYPRDIAETKANQVNNYARSQGHPLLCQIEPK 136
>gi|110834145|ref|YP_693004.1| hypothetical protein ABO_1284 [Alcanivorax borkumensis SK2]
gi|110647256|emb|CAL16732.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 124
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 35 KGIAEFDNCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
++ D D V K++ P +Y+VL++ND+YTPM+FV+ +L++FF D E A +
Sbjct: 20 DSSSDPDRHGDLAVEEAKPKLKPPSMYKVLMLNDDYTPMDFVVEILEDFFNLDREQATRV 79
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH +G CGVY +IAE K QV+ Y+R++Q+PL C +EQ
Sbjct: 80 MLTVHTEGKAVCGVYPQDIAETKATQVVEYARENQHPLMCQVEQ 123
>gi|85716350|ref|ZP_01047323.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter sp.
Nb-311A]
gi|85696866|gb|EAQ34751.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter sp.
Nb-311A]
Length = 110
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/112 (53%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M++ G D + K + P LYRVL++ND+YTPMEFV+HVL+ FF KD
Sbjct: 1 MSEDDDRAGGR--GDPAASVITKVRPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKD 58
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A IML VHH GIGECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 59 LEAATQIMLHVHHHGIGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 110
>gi|300113413|ref|YP_003759988.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
watsonii C-113]
gi|299539350|gb|ADJ27667.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosococcus
watsonii C-113]
Length = 107
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/106 (45%), Positives = 67/106 (63%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M K E + K++ P LY+V+++ND+YTPMEFV+ VLQ FF D A
Sbjct: 1 MGKINPDEENEGGFVVDTAKPKLKRPPLYKVVMLNDDYTPMEFVVKVLQTFFAMDRGKAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+M +VH +G G CGV+ YEIAE K +QV YS HQ+PL+C++E+
Sbjct: 61 RVMWQVHTEGRGICGVFTYEIAETKASQVNEYSMNHQHPLKCVLER 106
>gi|26990714|ref|NP_746139.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
KT2440]
gi|148547059|ref|YP_001267161.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
F1]
gi|167034610|ref|YP_001669841.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
GB-1]
gi|37077092|sp|Q88FS4|CLPS_PSEPK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214740|sp|A5W1G7|CLPS_PSEP1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|189082475|sp|B0KLX7|CLPS_PSEPG RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|24985707|gb|AAN69603.1|AE016593_11 conserved hypothetical protein [Pseudomonas putida KT2440]
gi|148511117|gb|ABQ77977.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
F1]
gi|166861098|gb|ABY99505.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
GB-1]
Length = 120
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ + E D + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAPSEIRLTFNQD-RPQSNEDDGSGLAVQEAKPILQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A IML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LETFFSLNRELATKIMLTVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|115525406|ref|YP_782317.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris BisA53]
gi|115519353|gb|ABJ07337.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris BisA53]
Length = 109
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 54/107 (50%), Positives = 74/107 (69%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
+ + + + + P +YRVL++ND+YTPMEFV+HVL+ FF D E A
Sbjct: 3 DENRSGSPGSPATSVITKTKPRTKRPSMYRVLILNDDYTPMEFVVHVLEKFFQMDVEAAT 62
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML VHH GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 63 KVMLHVHHHGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 109
>gi|170740498|ref|YP_001769153.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
sp. 4-46]
gi|168194772|gb|ACA16719.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
sp. 4-46]
Length = 142
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 54/96 (56%), Positives = 70/96 (72%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R + P LYRVLL+ND+YTPMEFV+HV++ FF K E A IML VH G+
Sbjct: 47 GTAVITRTRPVTKRPNLYRVLLLNDDYTPMEFVVHVVERFFNKSREDATRIMLHVHQNGV 106
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 107 GECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 142
>gi|170722578|ref|YP_001750266.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
W619]
gi|229889823|sp|B1JBE9|CLPS_PSEPW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|169760581|gb|ACA73897.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas putida
W619]
Length = 120
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 SFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
S I + ++ + E D + ++ P +Y+V+L ND+YTPM+FV+ VL+ F
Sbjct: 5 SEIRLTFNQD-RPQSNEDDGSGLAVQEAKPILQAPPMYKVVLFNDDYTPMDFVVEVLETF 63
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F + E A IML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 64 FSLNRELATKIMLTVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|325273424|ref|ZP_08139676.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas sp.
TJI-51]
gi|324101437|gb|EGB99031.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas sp.
TJI-51]
Length = 120
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 23 SFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
S I + ++ + E D + ++ P +Y+V+L ND+YTPM+FV+ VL+ F
Sbjct: 5 SQIRLTFNQD-RPQSNEDDGSGLAVQEAKPILQAPPMYKVVLFNDDYTPMDFVVEVLETF 63
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F + E A IML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 64 FSLNRELATKIMLTVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|117925058|ref|YP_865675.1| ATP-dependent Clp protease adaptor protein ClpS [Magnetococcus sp.
MC-1]
gi|117608814|gb|ABK44269.1| ATP-dependent Clp protease adaptor protein ClpS [Magnetococcus sp.
MC-1]
Length = 113
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 47/99 (47%), Positives = 64/99 (64%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
D+ V VR P +YRV+L+ND++TPMEFV+ +L +FF K E A IML +H
Sbjct: 14 NIDHDTSVAVHLDVVVREPPMYRVVLLNDDFTPMEFVVELLMHFFRKTAEQATQIMLNIH 73
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H+G+G CG Y EIAE KV QV ++R + +PL+C ME
Sbjct: 74 HEGVGVCGTYPREIAETKVAQVHQHARTNGHPLKCRMEP 112
>gi|166712083|ref|ZP_02243290.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
pv. oryzicola BLS256]
Length = 112
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 49/111 (44%), Positives = 66/111 (59%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M + ++ + +V P Y+VLL+ND+YTPM+FV+ VLQ FF +
Sbjct: 1 MPRNTSHEHEHEHEHDHGLMVEASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLN 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E A IML VH +G G CGVY+ E+AE KV QV +SR +Q+PL C MEQ
Sbjct: 61 LEQATQIMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 111
>gi|220920395|ref|YP_002495696.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
nodulans ORS 2060]
gi|219945001|gb|ACL55393.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacterium
nodulans ORS 2060]
Length = 135
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 55/111 (49%), Positives = 74/111 (66%)
Query: 28 ADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ N + + R + P LYRVLL+ND+YTPMEFV+HV++ FF K
Sbjct: 25 PRAPGNGGNGGDGRSGTAVITRTRPITKRPNLYRVLLLNDDYTPMEFVVHVVERFFNKSR 84
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A IML VH G+GECGV+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 85 EDATRIMLHVHQNGVGECGVFTYEVAETKVTQVMDFARKHQHPLQCVMEKK 135
>gi|28897787|ref|NP_797392.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus RIMD 2210633]
gi|153837344|ref|ZP_01990011.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus AQ3810]
gi|260365333|ref|ZP_05777884.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus K5030]
gi|260876951|ref|ZP_05889306.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus AN-5034]
gi|260897908|ref|ZP_05906404.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus Peru-466]
gi|260901417|ref|ZP_05909812.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus AQ4037]
gi|33301900|sp|Q87QY5|CLPS_VIBPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|28806000|dbj|BAC59276.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149749375|gb|EDM60148.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus AQ3810]
gi|308085449|gb|EFO35144.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus Peru-466]
gi|308093908|gb|EFO43603.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus AN-5034]
gi|308107509|gb|EFO45049.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus AQ4037]
gi|308112689|gb|EFO50229.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus K5030]
gi|328473237|gb|EGF44085.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus 10329]
Length = 106
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 52/98 (53%), Positives = 67/98 (68%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D R S+KV+ PKLY V+L ND+YTPM+FVI VL+ FF D + A IMLKVH+
Sbjct: 8 VTPDSDLLERESTKVQPPKLYNVVLNNDDYTPMDFVIEVLERFFSHDIDKATQIMLKVHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CG Y+ EIAE KV QV Y+R++++PL C MEQ
Sbjct: 68 EGKAVCGTYSAEIAETKVAQVTMYARENEHPLLCTMEQ 105
>gi|213424208|pdb|3DNJ|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
Adaptor Protein In Complex With A N-End Rule Peptide
gi|213424209|pdb|3DNJ|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
Adaptor Protein In Complex With A N-End Rule Peptide
gi|228312130|pdb|3G19|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
Adaptor Protein In Complex With Lll Tripeptide
gi|228312330|pdb|3GQ0|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
Adaptor Protein - Apo Structure With No Peptide
gi|228312331|pdb|3GQ0|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
Adaptor Protein - Apo Structure With No Peptide
gi|229597899|pdb|3GQ1|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
Adaptor Protein In Complex With A Wlfvqrdske Decapeptide
gi|229597900|pdb|3GQ1|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
Adaptor Protein In Complex With A Wlfvqrdske Decapeptide
gi|229597907|pdb|3GW1|A Chain A, The Structure Of The Caulobacter Crescentus Clps Protease
Adaptor Protein In Complex With Fgg Tripeptide
gi|229597908|pdb|3GW1|B Chain B, The Structure Of The Caulobacter Crescentus Clps Protease
Adaptor Protein In Complex With Fgg Tripeptide
Length = 85
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 65/85 (76%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ P LYRVL++ND+YTPMEFV++VL+ FF K E A IML VH G+G CGVY YE+A
Sbjct: 1 TQKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVA 60
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
E KV QV++ +R+HQ+PLQC ME+
Sbjct: 61 ETKVAQVIDSARRHQHPLQCTMEKD 85
>gi|126733462|ref|ZP_01749209.1| ATP-dependent Clp protease, putative [Roseobacter sp. CCS2]
gi|126716328|gb|EBA13192.1| ATP-dependent Clp protease, putative [Roseobacter sp. CCS2]
Length = 113
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 68/91 (74%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+ K + P +Y+VL++ND++TPMEFV+HVL+ FF H A +ML VH +G+ GV
Sbjct: 23 LETKPKTKRPPMYKVLILNDDFTPMEFVVHVLERFFGLSHAQAFELMLTVHKKGVAVVGV 82
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+++EIAE KV QVM+++++HQ+PLQC ME++
Sbjct: 83 FSHEIAETKVAQVMDFAQRHQHPLQCTMEKE 113
>gi|91229058|ref|ZP_01262884.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
alginolyticus 12G01]
gi|269967653|ref|ZP_06181703.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
alginolyticus 40B]
gi|91187451|gb|EAS73791.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
alginolyticus 12G01]
gi|269827740|gb|EEZ82024.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
alginolyticus 40B]
Length = 106
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 51/98 (52%), Positives = 67/98 (68%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D R S+KV+ PKLY V+L ND+YTPM+FVI VL+ FF D + A IML+VH+
Sbjct: 8 VTPDSDLLERESTKVQPPKLYNVVLNNDDYTPMDFVIEVLERFFSHDIDKATQIMLQVHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CG Y+ EIAE KV QV Y+R++++PL C MEQ
Sbjct: 68 EGKAICGTYSAEIAETKVAQVTMYARENEHPLLCTMEQ 105
>gi|237809064|ref|YP_002893504.1| ATP-dependent Clp protease adaptor protein ClpS [Tolumonas auensis
DSM 9187]
gi|237501325|gb|ACQ93918.1| ATP-dependent Clp protease adaptor protein ClpS [Tolumonas auensis
DSM 9187]
Length = 104
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 47/102 (46%), Positives = 68/102 (66%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
G + ++++ P +Y+V+L+ND+YTPM+FV+ VLQ FF D E A +ML
Sbjct: 2 GKTRVSPTPGTAAESKTEIQPPSMYKVVLLNDDYTPMDFVVEVLQRFFRMDLEKATQVML 61
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH+ G G CGVY +IAE KV+QV +Y+R+H++PL C MEQ
Sbjct: 62 AVHYDGKGICGVYTADIAETKVDQVNHYARKHEHPLLCTMEQ 103
>gi|77459813|ref|YP_349320.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
fluorescens Pf0-1]
gi|77383816|gb|ABA75329.1| ATP-dependent clp protease adaptor protein [Pseudomonas fluorescens
Pf0-1]
Length = 127
Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 19 LALMSFIFMADSRMNK------KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPM 72
+ +S I + ++ + D+ + ++ P +Y+V+L ND+YTPM
Sbjct: 1 MHAISQIRLTFNQDRPLLQKDLPQEHDDDSAGVAVQEAKPALQAPPMYKVVLFNDDYTPM 60
Query: 73 EFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132
+FV+ VL+ FF + E A +ML VH +G CGV+ +IAE K QV Y+R+ Q+PL
Sbjct: 61 DFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGVFTRDIAETKAMQVNQYARESQHPLL 120
Query: 133 CIMEQK 138
C +E+
Sbjct: 121 CEIEKD 126
>gi|192291927|ref|YP_001992532.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris TIE-1]
gi|192285676|gb|ACF02057.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris TIE-1]
Length = 115
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 55/99 (55%), Positives = 72/99 (72%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+ + + P LYRVL++ND+YTPMEFV+HVL+ FF D E A +ML VHH
Sbjct: 17 STPSTSVITKTKPRTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATKVMLHVHH 76
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 77 HGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 115
>gi|289208442|ref|YP_003460508.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
sp. K90mix]
gi|288944073|gb|ADC71772.1| ATP-dependent Clp protease adaptor protein ClpS [Thioalkalivibrio
sp. K90mix]
Length = 108
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
K I + D+ E +++ P+ Y+V+L+ND++TPMEFV+ VL+ FF D E A
Sbjct: 2 SEKKPQIPDHDSNTAVE-ESRPELKPPRQYKVVLLNDDFTPMEFVVEVLETFFSMDREKA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH +G G CG+Y ++AE KV QV +Y+R HQ+PL C ME+
Sbjct: 61 TQVMLHVHTRGKGICGIYTRDVAETKVAQVNDYARSHQHPLLCSMEE 107
>gi|117619917|ref|YP_856387.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|158512298|sp|A0KJD6|CLPS_AERHH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|117561324|gb|ABK38272.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 105
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 62/93 (66%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+ +K++ P +Y+V+L ND+YTPMEFV+ VLQ FF D + A +ML VH+ G G
Sbjct: 12 EIAEAEKTKLQPPPMYKVVLNNDDYTPMEFVVEVLQKFFGMDLDKATQVMLSVHYSGKGV 71
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
CG + EIAE KV QV Y+R +++PL C ME+
Sbjct: 72 CGTFTAEIAETKVVQVNTYARNNEHPLLCTMEK 104
>gi|256822682|ref|YP_003146645.1| ATP-dependent Clp protease adaptor protein ClpS [Kangiella
koreensis DSM 16069]
gi|256796221|gb|ACV26877.1| ATP-dependent Clp protease adaptor protein ClpS [Kangiella
koreensis DSM 16069]
Length = 115
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/112 (39%), Positives = 71/112 (63%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M++ + + + + K++ P +Y+VL++ND+YTPM+FV+ VL+ FF D
Sbjct: 1 MSNDQNHNQNHDHEHEHGLAVADAKPKLKQPPMYKVLILNDDYTPMDFVVDVLRKFFTMD 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A +ML+VHH+G G CG + +IAE KV QV ++R +Q+PL C+ME +
Sbjct: 61 TEQATRVMLQVHHEGQGVCGTFTPDIAETKVVQVNEFARANQHPLLCVMEPE 112
>gi|116050608|ref|YP_790573.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
aeruginosa UCBPP-PA14]
gi|152987145|ref|YP_001347950.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
aeruginosa PA7]
gi|296388919|ref|ZP_06878394.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
aeruginosa PAb1]
gi|12230856|sp|Q9I0L7|CLPS_PSEAE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|122259731|sp|Q02NB3|CLPS_PSEAB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214738|sp|A6V4G5|CLPS_PSEA7 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|115585829|gb|ABJ11844.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
aeruginosa UCBPP-PA14]
gi|150962303|gb|ABR84328.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 122
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEV-RFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
+ S I + ++ + + D V ++ P LY+V+L ND+YTPM+FV+
Sbjct: 1 MHAPSQIRLTFNQDHPEPHEHEDEGAGLAVQESKPVLQPPPLYKVVLFNDDYTPMDFVVE 60
Query: 78 VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VL+ FF D E A IML VH QG CG++ ++AE K QV Y+R+ Q+PL C +E+
Sbjct: 61 VLEVFFNMDREKATKIMLTVHTQGKAVCGLFTRDVAETKAMQVNQYARESQHPLLCEIEK 120
Query: 138 K 138
Sbjct: 121 D 121
>gi|126725142|ref|ZP_01740985.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
bacterium HTCC2150]
gi|126706306|gb|EBA05396.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
bacterium HTCC2150]
Length = 115
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 70/104 (67%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
++ D + ++ + P +Y+VLL+ND+YTPMEFV+HVL+ FF ++ A IM
Sbjct: 11 SDDDGDNSEGDVATKTRARTKRPPMYKVLLLNDDYTPMEFVVHVLERFFGINNAQAVEIM 70
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L VH +G+ GV+++EIAEMKV QVM+ + Q ++PLQC E++
Sbjct: 71 LTVHKKGMAVVGVFSHEIAEMKVTQVMDLAHQQEHPLQCTFEKE 114
>gi|67460482|sp|Q6N535|CLPS2_RHOPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
Length = 109
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 55/99 (55%), Positives = 72/99 (72%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+ + + P LYRVL++ND+YTPMEFV+HVL+ FF D E A +ML VHH
Sbjct: 11 STPSTSVITKTKPRTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQMDVEAATKVMLHVHH 70
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GIGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 71 HGIGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 109
>gi|296446322|ref|ZP_06888268.1| ATP-dependent Clp protease adaptor protein ClpS [Methylosinus
trichosporium OB3b]
gi|296256223|gb|EFH03304.1| ATP-dependent Clp protease adaptor protein ClpS [Methylosinus
trichosporium OB3b]
Length = 141
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 61/127 (48%), Positives = 79/127 (62%)
Query: 12 RVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTP 71
RV R G + A K G + R ++ R P +YRVLL+ND+YT
Sbjct: 15 RVTRRGAPPRAAGRTRASKEPRKSGGGDGGAGTALITRTRTQTRRPNMYRVLLLNDDYTT 74
Query: 72 MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
EFV+ VL+ +F K E A IML VH+ G+GECGVY YE+AE KV QVM+Y+R+HQ+PL
Sbjct: 75 QEFVVIVLRKYFNKSLEEATRIMLHVHNHGVGECGVYTYEVAETKVTQVMDYARKHQHPL 134
Query: 132 QCIMEQK 138
QCIME+K
Sbjct: 135 QCIMEKK 141
>gi|74317254|ref|YP_314994.1| ATP-dependent Clp protease adaptor protein ClpS [Thiobacillus
denitrificans ATCC 25259]
gi|74056749|gb|AAZ97189.1| ATP-dependent Clp protease adaptor protein ClpS [Thiobacillus
denitrificans ATCC 25259]
Length = 102
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 68/85 (80%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
KV+ P LY+VLL+ND+YTPMEFV+HVL+ FF D E A IMLKVH +G+G CGV+ +I
Sbjct: 17 KVKPPPLYKVLLLNDDYTPMEFVVHVLRKFFGIDEERATQIMLKVHTEGVGVCGVFTRDI 76
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A KV QV++++RQHQ+PLQC ME+
Sbjct: 77 AHTKVEQVVDFARQHQHPLQCTMEE 101
>gi|67460271|sp|Q6FCI2|CLPS_ACIAD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
Length = 107
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 36 GIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ D V+ + +++ P LY V+L+ND+YTPM+FVI +LQ +F + + A +M
Sbjct: 3 DSQSDEPEGDIAVQTAPPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFALNLDQATQVM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L VH++G G GVY +IAE K NQV NY+R +PL C +E K
Sbjct: 63 LTVHYEGKGVAGVYPRDIAETKANQVNNYARSQGHPLLCQIEPK 106
>gi|330875785|gb|EGH09934.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. morsprunorum str. M302280PT]
Length = 120
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ E D+ + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAFSKIRLTFNQD-GPQSHEDDSAGIAVQDAKPTLQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A +ML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LEAFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAAQVNQYARESQHPLLCEIEKD 119
>gi|291613434|ref|YP_003523591.1| ATP-dependent Clp protease adaptor protein ClpS [Sideroxydans
lithotrophicus ES-1]
gi|291583546|gb|ADE11204.1| ATP-dependent Clp protease adaptor protein ClpS [Sideroxydans
lithotrophicus ES-1]
Length = 100
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 43/95 (45%), Positives = 65/95 (68%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + SK + PKLY+V+L+ND++T MEFVI VL+ FF E A +ML++H++G
Sbjct: 5 QENVNLLERSKTKPPKLYKVILLNDDFTTMEFVIEVLRIFFSMGQERATQVMLQIHNEGS 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
CGVY +IAE KV+QV +++QH +PL+C E+
Sbjct: 65 AVCGVYPKDIAETKVSQVSEFAKQHGHPLRCQTEE 99
>gi|145299397|ref|YP_001142238.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromonas
salmonicida subsp. salmonicida A449]
gi|158514051|sp|A4SNL8|CLPS_AERS4 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|142852169|gb|ABO90490.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 105
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 45/93 (48%), Positives = 62/93 (66%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+ +K++ P +Y+V+L ND+YTPMEFV+ VLQ FF D + A +ML VH+ G G
Sbjct: 12 EIAQAEKTKLQPPPMYKVVLNNDDYTPMEFVVEVLQKFFGMDLDKATQVMLSVHYSGKGV 71
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
CG + EIAE KV QV YSR +++PL C ME+
Sbjct: 72 CGTFTAEIAETKVVQVNTYSRNNEHPLLCTMEK 104
>gi|90021331|ref|YP_527158.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharophagus
degradans 2-40]
gi|89950931|gb|ABD80946.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharophagus
degradans 2-40]
Length = 124
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 66/104 (63%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
+ + + +++ P +Y+V+++ND+YTPMEFV+ VL+ FF + E+A
Sbjct: 13 KESDEDTTFDGGVAVQAEKPRLKRPPMYKVVMLNDDYTPMEFVVEVLELFFSMNRESATR 72
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
IML+VH +G CGV++ ++AE K QV Y++Q+++PL C +E
Sbjct: 73 IMLRVHTEGKAVCGVFSRDVAETKAAQVNQYAKQNEHPLLCEIE 116
>gi|153864221|ref|ZP_01997190.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. SS]
gi|152146285|gb|EDN72811.1| ATP-dependent Clp protease adaptor protein ClpS [Beggiatoa sp. SS]
Length = 106
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 66/96 (68%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ K++ P LY+V+L+ND+YTPM+FV+HVL+NFF + + A +ML+VH +G
Sbjct: 10 DDDVVVEETKPKLKRPPLYKVVLLNDDYTPMDFVVHVLENFFGMNQDLANHVMLQVHLEG 69
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG Y ++AE KV QV Y+R++Q+PL C ME+
Sbjct: 70 KGICGTYTRDVAETKVTQVNTYARENQHPLLCTMEK 105
>gi|28870518|ref|NP_793137.1| hypothetical protein PSPTO_3354 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213970047|ref|ZP_03398179.1| hypothetical protein PSPTOT1_5283 [Pseudomonas syringae pv. tomato
T1]
gi|301381402|ref|ZP_07229820.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. tomato Max13]
gi|302058400|ref|ZP_07249941.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. tomato K40]
gi|302130351|ref|ZP_07256341.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|37077076|sp|Q87ZS0|CLPS_PSESM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|28853766|gb|AAO56832.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213925151|gb|EEB58714.1| hypothetical protein PSPTOT1_5283 [Pseudomonas syringae pv. tomato
T1]
gi|330965608|gb|EGH65868.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|331017259|gb|EGH97315.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 120
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ E D+ + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAFSKIRLTFNQD-GPQSHEDDSAGIAVQDAKPTLQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A +ML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAAQVNQYARESQHPLLCEIEKD 119
>gi|320323776|gb|EFW79860.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. glycinea str. B076]
gi|320327916|gb|EFW83921.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330881201|gb|EGH15350.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 120
Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ + E D + +R P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAFSKIRLTFNQDSP-QSHEDDAAGIAVQDAKPTLRAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A +ML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|323138622|ref|ZP_08073689.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocystis sp.
ATCC 49242]
gi|322396110|gb|EFX98644.1| ATP-dependent Clp protease adaptor protein ClpS [Methylocystis sp.
ATCC 49242]
Length = 130
Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 52/106 (49%), Positives = 71/106 (66%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
+ + + + R P +YRVLL+ND+YT EFV+ VL+ +F K E A
Sbjct: 25 REPRKSGDGAGTALITQARQQTRRPNMYRVLLLNDDYTTQEFVVIVLRKYFNKSVEEATR 84
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH+ G+GECGVY YE+AE KV QVM+++R+HQ+PLQCIME+K
Sbjct: 85 IMLHVHNHGVGECGVYTYEVAETKVTQVMDFARKHQHPLQCIMEKK 130
>gi|71735262|ref|YP_275268.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257485425|ref|ZP_05639466.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|289625413|ref|ZP_06458367.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289649304|ref|ZP_06480647.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. aesculi str. 2250]
gi|298487537|ref|ZP_07005579.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|123635959|sp|Q48H65|CLPS_PSE14 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|71555815|gb|AAZ35026.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298157921|gb|EFH98999.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|330866850|gb|EGH01559.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330889671|gb|EGH22332.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. mori str. 301020]
gi|331010739|gb|EGH90795.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. tabaci ATCC 11528]
Length = 120
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ + E D + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAFSKIRLTFNQDSP-QSHEDDAAGIAVQDAKPTLQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A +ML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|153835790|ref|ZP_01988457.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio harveyi
HY01]
gi|156973856|ref|YP_001444763.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio harveyi
ATCC BAA-1116]
gi|269960956|ref|ZP_06175325.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio harveyi
1DA3]
gi|166214749|sp|A7N1L5|CLPS_VIBHB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|148867478|gb|EDL66853.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio harveyi
HY01]
gi|156525450|gb|ABU70536.1| hypothetical protein VIBHAR_01566 [Vibrio harveyi ATCC BAA-1116]
gi|269834175|gb|EEZ88265.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio harveyi
1DA3]
Length = 106
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 52/98 (53%), Positives = 67/98 (68%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D R S+KV+ PKLY V+L ND+YTPM+FVI VL+ FF D + A IMLK+H+
Sbjct: 8 VTPDSDLLERESTKVQPPKLYNVVLNNDDYTPMDFVIEVLERFFSHDIDKATQIMLKIHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CG Y+ EIAE KV QV YSR++++PL C MEQ
Sbjct: 68 EGKAICGTYSAEIAETKVAQVTMYSRENEHPLLCTMEQ 105
>gi|58582177|ref|YP_201193.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
pv. oryzae KACC10331]
gi|58426771|gb|AAW75808.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 126
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 47/110 (42%), Positives = 65/110 (59%)
Query: 28 ADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ + + + +V P Y+VLL+ND+YTPM+FV+ VL+ FF +
Sbjct: 16 PYNGRMPRNTSHEHDHGLMVEASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNL 75
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E A IML VH +G G CGVY+ E+AE KV QV +SR +Q+PL C MEQ
Sbjct: 76 EQATQIMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 125
>gi|237800558|ref|ZP_04589019.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|330958173|gb|EGH58433.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|331023418|gb|EGI03475.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 120
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ E D+ + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAFSKIRLTFNQD-GPQSHEDDSAGIAVQDAKPTLQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A +ML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|315122668|ref|YP_004063157.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313496070|gb|ADR52669.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 120
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 87/115 (75%), Positives = 105/115 (91%)
Query: 22 MSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN 81
+SF+FMA + MN+KG+A D+C++++ SSKVR P+LYRVLLVND+YTPMEFVIHVLQ
Sbjct: 4 ISFVFMAKNHMNEKGVARTDSCINTKEEISSKVRAPRLYRVLLVNDDYTPMEFVIHVLQK 63
Query: 82 FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
FF+KDHE++K IMLK+HHQGIGECGVYAYEIAEMKVNQVMNYSRQ+Q+PLQCIME
Sbjct: 64 FFHKDHESSKSIMLKIHHQGIGECGVYAYEIAEMKVNQVMNYSRQNQHPLQCIME 118
>gi|163802085|ref|ZP_02195981.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. AND4]
gi|159174226|gb|EDP59034.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. AND4]
Length = 106
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 52/98 (53%), Positives = 66/98 (67%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D R S+KV+ PKLY V+L ND+YTPM+FVI VL+ FF D + A IMLK+H+
Sbjct: 8 VTPDSDLLERESTKVQPPKLYNVVLNNDDYTPMDFVIEVLERFFSHDIDKATQIMLKIHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG Y+ EIAE KV QV YSR++++PL C MEQ
Sbjct: 68 DGKAICGTYSAEIAETKVAQVTMYSRENEHPLLCTMEQ 105
>gi|56459784|ref|YP_155065.1| ATP-dependent Clp protease adaptor protein ClpS [Idiomarina
loihiensis L2TR]
gi|67460203|sp|Q5R0C3|CLPS_IDILO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|56178794|gb|AAV81516.1| Uncharacterized conserved protein [Idiomarina loihiensis L2TR]
Length = 102
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/102 (47%), Positives = 71/102 (69%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++FD+ S+ +++ P +Y+V++ ND+YTPM+FVI VL FF D E A ML+
Sbjct: 1 MSQFDHQHLSDTEEKQELKPPSMYKVIINNDDYTPMDFVIEVLMRFFKMDQERATDTMLQ 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH++G CGVY+ EIAE KV QV Y+R++Q+PL C MEQ+
Sbjct: 61 VHYKGKAVCGVYSAEIAETKVVQVNQYARENQHPLLCTMEQE 102
>gi|254474220|ref|ZP_05087611.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudovibrio sp.
JE062]
gi|211956750|gb|EEA91959.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudovibrio sp.
JE062]
Length = 109
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/91 (61%), Positives = 74/91 (81%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+ K + P LYRVLL+ND+YTPMEFVIHV++ FF+ D E+A IML VHH G+GECGV
Sbjct: 19 TKPKPKTKRPSLYRVLLLNDDYTPMEFVIHVVERFFHLDRESATQIMLHVHHHGVGECGV 78
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 79 FTYEVAETKVTQVMDFARKHQHPLQCVMEKK 109
>gi|228312133|pdb|3G1B|A Chain A, The Structure Of The M53a Mutant Of Caulobacter Crescentus
Clps Protease Adaptor Protein In Complex With Wlfvqrdske
Peptide
gi|228312134|pdb|3G1B|B Chain B, The Structure Of The M53a Mutant Of Caulobacter Crescentus
Clps Protease Adaptor Protein In Complex With Wlfvqrdske
Peptide
gi|290789973|pdb|3G3P|A Chain A, The Structure Of The M53a Mutant Of The Caulobacter
Crescentus Clps In Complex With A Peptide Containing An
Amino-Terminal Norleucine Residue
gi|290789974|pdb|3G3P|B Chain B, The Structure Of The M53a Mutant Of The Caulobacter
Crescentus Clps In Complex With A Peptide Containing An
Amino-Terminal Norleucine Residue
Length = 85
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/85 (57%), Positives = 64/85 (75%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ P LYRVL++ND+YTP EFV++VL+ FF K E A IML VH G+G CGVY YE+A
Sbjct: 1 TQKPSLYRVLILNDDYTPAEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVA 60
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
E KV QV++ +R+HQ+PLQC ME+
Sbjct: 61 ETKVAQVIDSARRHQHPLQCTMEKD 85
>gi|66046413|ref|YP_236254.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. syringae B728a]
gi|302185010|ref|ZP_07261683.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. syringae 642]
gi|75501532|sp|Q4ZRK6|CLPS_PSEU2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|63257120|gb|AAY38216.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. syringae B728a]
gi|330972894|gb|EGH72960.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. aceris str. M302273PT]
Length = 120
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ + + + + + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAFSKIRLTFNQDDPQSHEDDSAGIAVQ-DAKPTLQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A +ML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|330900612|gb|EGH32031.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. japonica str. M301072PT]
gi|330940301|gb|EGH43421.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. pisi str. 1704B]
gi|330981384|gb|EGH79487.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 120
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ + + + + + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAFSKIRLTFNQDDPQSHEDDSAGIAVQ-DAKPALQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A +ML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCEIEKD 119
>gi|209695650|ref|YP_002263579.1| ATP-dependent Clp protease adaptor protein ClpS [Aliivibrio
salmonicida LFI1238]
gi|238066649|sp|B6EIX3|CLPS_ALISL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|208009602|emb|CAQ79898.1| ATP-dependent Clp protease adaptor protein ClpS [Aliivibrio
salmonicida LFI1238]
Length = 106
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 61/97 (62%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + ++ P +Y+V+L ND+YTPMEFV+ VL FF D E A +ML VH++
Sbjct: 9 SPDSDVLELEKTGLKPPPMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQLMLTVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV QV YSR +++PL C MEQ
Sbjct: 69 GKAVCGVFTAEVAETKVAQVNIYSRDNEHPLLCTMEQ 105
>gi|330829987|ref|YP_004392939.1| ATP-dependent Clp protease adapter protein clpS [Aeromonas veronii
B565]
gi|328805123|gb|AEB50322.1| ATP-dependent Clp protease adapter protein clpS [Aeromonas veronii
B565]
Length = 105
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 63/93 (67%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+ +K++ P +Y+V+L ND+YTPMEFV+ VLQ FF D + A +ML VH+ G G
Sbjct: 12 EIAEAEKTKLQPPPMYKVVLNNDDYTPMEFVVEVLQKFFGMDLDKATQVMLSVHYSGKGV 71
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
CG++ EIAE KV QV Y+R +++PL C ME+
Sbjct: 72 CGMFTAEIAETKVVQVNTYARNNEHPLLCTMEK 104
>gi|330954576|gb|EGH54836.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae Cit 7]
Length = 120
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ + + + + + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAFSKIRLTFNQDDPQSHEDDSAGIAVQ-DAKPTLQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A +ML VH +G CG++ +IAE K QV Y+R+ Q+PL C +E+
Sbjct: 60 LEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAMQVNQYAREGQHPLLCEIEKD 119
>gi|262274511|ref|ZP_06052322.1| ATP-dependent Clp protease adaptor protein ClpS [Grimontia hollisae
CIP 101886]
gi|262221074|gb|EEY72388.1| ATP-dependent Clp protease adaptor protein ClpS [Grimontia hollisae
CIP 101886]
Length = 106
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/96 (50%), Positives = 67/96 (69%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D + +K++ P LY+V+L ND+YTPMEFV+ VLQ FF D + A +ML VH++G
Sbjct: 10 PDSDVKEAEETKLKPPSLYKVVLNNDDYTPMEFVVEVLQRFFSMDIDKATQLMLTVHYEG 69
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
CG+Y E+AEMKV QVM Y+++HQ+PL C ME+
Sbjct: 70 RAVCGIYTAEVAEMKVAQVMMYAKEHQHPLLCTMEK 105
>gi|197284584|ref|YP_002150456.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis
HI4320]
gi|227356766|ref|ZP_03841151.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis ATCC
29906]
gi|194682071|emb|CAR41609.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis
HI4320]
gi|227163056|gb|EEI47991.1| ATP-dependent Clp protease adaptor protein [Proteus mirabilis ATCC
29906]
Length = 104
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 62/96 (64%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ S P +Y+V+L ND+YTPM+FV+ VL +F+ + E A IML VHH+G
Sbjct: 8 TETTLGEKVSQLNEPPAMYKVILNNDDYTPMDFVVEVLTMYFFLNEEKATQIMLDVHHKG 67
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY+ +IAE KV QV Y+R++ +PL C +E+
Sbjct: 68 KGVCGVYSADIAETKVAQVNQYARENGHPLLCTLEK 103
>gi|296135869|ref|YP_003643111.1| ATP-dependent Clp protease adaptor protein ClpS [Thiomonas
intermedia K12]
gi|294340063|emb|CAZ88431.1| ATP-dependent Clp protease adaptor protein clpS [Thiomonas sp. 3As]
gi|295795991|gb|ADG30781.1| ATP-dependent Clp protease adaptor protein ClpS [Thiomonas
intermedia K12]
Length = 108
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
M+ + V + +++ P +Y+V+L+NDN+TPMEFV+ V+Q++F KD ETA
Sbjct: 1 MSASHSPPPADGGAVVVERQTLRLKPPAMYQVILLNDNFTPMEFVVVVIQHYFNKDRETA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
IMLKVH G G CGVY +IA KV QV+ +RQ +PLQC+ME
Sbjct: 61 TQIMLKVHRDGRGVCGVYTRDIAATKVEQVIGAARQAGHPLQCVME 106
>gi|255020026|ref|ZP_05292099.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
caldus ATCC 51756]
gi|254970555|gb|EET28044.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
caldus ATCC 51756]
Length = 102
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 47/102 (46%), Positives = 68/102 (66%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ + +++ P YRVLL+ND++TPM++V+ VLQ +F+K HE A IML+
Sbjct: 1 MPSRKEHRQPLLEREPRLKEPSRYRVLLLNDDFTPMDYVVQVLQQYFHKTHEEAVQIMLE 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VHH G G CGVY Y++AE KV V +RQHQ+PL+C ME++
Sbjct: 61 VHHSGRGICGVYPYDMAETKVALVTADARQHQHPLRCTMEKE 102
>gi|86139108|ref|ZP_01057679.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseobacter sp.
MED193]
gi|85824339|gb|EAQ44543.1| ATP-dependent Clp protease, adaptor protein ClpS [Roseobacter sp.
MED193]
Length = 114
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 64/90 (71%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ K + P Y+VLL+ND+YTPMEFV+ VL+ FF H + IML VH +G+ GV+
Sbjct: 24 KTRPKTQRPPRYKVLLLNDDYTPMEFVVMVLERFFGMTHAQSFEIMLTVHKKGVAVVGVF 83
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+EIAE KV QVM+++ +HQ+PLQC ME++
Sbjct: 84 THEIAETKVAQVMDFANRHQHPLQCTMEKE 113
>gi|330987929|gb|EGH86032.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 120
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ S I + ++ + E D + ++ P +Y+V+L ND+YTPM+FV+ V
Sbjct: 1 MHAFSKIRLTFNQDSP-QSHEDDAAGIAVQDAKPTLQAPPMYKVVLFNDDYTPMDFVVEV 59
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ FF + E A +ML VH +G CG++ +IAE K QV Y+R+ Q+PL C E+
Sbjct: 60 LEVFFNLNRELATKVMLAVHTEGRAVCGLFTRDIAETKAMQVNQYARESQHPLLCETEKD 119
>gi|90579120|ref|ZP_01234930.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio angustum
S14]
gi|90439953|gb|EAS65134.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio angustum
S14]
Length = 106
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 64/97 (65%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + +V+ P +Y+V+L ND+YTPM+FVI VLQ FF D E A +ML VH++
Sbjct: 9 SPDSDILEKEEIQVKPPSMYKVILNNDDYTPMDFVIEVLQTFFSMDLEKAAQLMLAVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG + E+AE KV QVM Y+R+H++PL C ME+
Sbjct: 69 GKAICGTFTAEVAETKVAQVMMYAREHEHPLLCTMEK 105
>gi|307822307|ref|ZP_07652539.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacter
tundripaludum SV96]
gi|307736873|gb|EFO07718.1| ATP-dependent Clp protease adaptor protein ClpS [Methylobacter
tundripaludum SV96]
Length = 107
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 67/102 (65%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ + + K++ P LY+V+L+ND++TPM+FVI +L +FF E A +ML
Sbjct: 5 DPFKDKDGGLAVQEAKPKLKRPPLYKVILLNDDFTPMDFVIEILMDFFAMSEEKATQVML 64
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+VH QG+G CG+Y+ ++AE KV V +YSR+H +PL C ME+
Sbjct: 65 QVHTQGVGVCGMYSKDVAETKVYIVNDYSREHHHPLMCSMEE 106
>gi|88798703|ref|ZP_01114286.1| substrate modulator for ClpAP, directs protease activity towards
aggregated proteins [Reinekea sp. MED297]
gi|88778466|gb|EAR09658.1| substrate modulator for ClpAP, directs protease activity towards
aggregated proteins [Reinekea sp. MED297]
Length = 113
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
M + + D + +++ P LYRV+L+ND+YTPMEFV+H+L+ FF + E A
Sbjct: 1 MGDDDQSSREGEGDVAFQTADPELKRPSLYRVVLLNDDYTPMEFVVHILEQFFAMNREKA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH QG G CGVY +IAE K V +YSR++Q+PL C +E+
Sbjct: 61 TQVMLAVHTQGKGVCGVYTKDIAETKAALVNDYSRENQHPLLCEVEE 107
>gi|329298246|ref|ZP_08255582.1| ATP-dependent Clp protease adaptor protein ClpS [Plautia stali
symbiont]
Length = 106
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/91 (51%), Positives = 64/91 (70%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E + ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +MLKVH+ G CG
Sbjct: 15 EDKVREGLKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDVERATQLMLKVHYHGKAICG 74
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
V+ E+AE KV QV NY+R++Q+PL C +E+
Sbjct: 75 VFTAEVAETKVAQVNNYARENQHPLLCTLEK 105
>gi|78047604|ref|YP_363779.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78036034|emb|CAJ23725.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 128
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 51/110 (46%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ RM + E ++ V +V P Y+VLL+ND+YTPM+FV+ VL+ FF +
Sbjct: 18 NGRMPRNTSHEHEHDHGLMVEASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNL 77
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E A IML VH +G G CGVY+ E+AE KV QV +SR +Q+PL C MEQ
Sbjct: 78 EQATQIMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 127
>gi|330446454|ref|ZP_08310106.1| specificity factor for ClpA-ClpP chaperone-protease complex
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490645|dbj|GAA04603.1| specificity factor for ClpA-ClpP chaperone-protease complex
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 106
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 63/97 (64%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +V+ P +Y+V+L ND+YTPM+FVI VLQ FF D E A +ML VH++
Sbjct: 9 SPDSDILEEEEIQVKPPSMYKVILNNDDYTPMDFVIDVLQTFFSMDLEKAAQLMLAVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG + E+AE KV QVM Y+R+H++PL C ME+
Sbjct: 69 GKAVCGTFTAEVAETKVAQVMMYAREHEHPLLCTMEK 105
>gi|326388617|ref|ZP_08210210.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206868|gb|EGD57692.1| ATP-dependent Clp protease adaptor protein ClpS [Novosphingobium
nitrogenifigens DSM 19370]
Length = 118
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 71/95 (74%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ ++ + P ++RVL++ND+YTPMEFV+ VL+ FF+ D E A +ML VH +G+
Sbjct: 23 DGLVGIATRARPKKPSMFRVLMLNDDYTPMEFVVMVLKRFFHMDLEQATRVMLHVHQRGV 82
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ YEIAE KVNQVM++++Q+Q+PL+C +E+
Sbjct: 83 GVCGVFPYEIAETKVNQVMDFAKQNQHPLRCTLEK 117
>gi|89073385|ref|ZP_01159909.1| ATP-dependent Clp protease adaptor protein ClpS [Photobacterium sp.
SKA34]
gi|89050872|gb|EAR56346.1| ATP-dependent Clp protease adaptor protein ClpS [Photobacterium sp.
SKA34]
Length = 106
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 63/97 (64%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +V+ P +Y+V+L ND+YTPM+FVI VLQ FF D E A +ML VH++
Sbjct: 9 SPDSDILEEEEIQVKPPSMYKVILNNDDYTPMDFVIEVLQTFFSMDLEKAAQLMLAVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG + E+AE KV QVM Y+R+H++PL C ME+
Sbjct: 69 GKAICGTFTAEVAETKVAQVMMYAREHEHPLLCTMEK 105
>gi|330719866|gb|EGG98352.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
proteobacterium IMCC2047]
Length = 131
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 65/103 (63%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ D+ + + K++ P +Y+V++ ND+YTPM+FV+ +L++FF + E A IM
Sbjct: 27 NHDHQGDDGNLAVEQAKPKLKPPPMYKVVMYNDDYTPMDFVVEILESFFNLNREKATQIM 86
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L VH QG CGV+ +IAE KV QV YS +++PL C M+Q
Sbjct: 87 LTVHTQGKAVCGVFTRDIAETKVTQVNQYSSDNEHPLLCGMDQ 129
>gi|10442011|gb|AAG17283.1|AF254897_2 YljA [Bradyrhizobium japonicum USDA 110]
Length = 97
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 58/97 (59%), Positives = 73/97 (75%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A IML VHH G
Sbjct: 1 PNTSVITKVKPKTKRPNLYRVLILNDDYTPMEFVVHVLEKFFQKDVEAATKIMLHVHHHG 60
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IGECGV+ YEIAE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 61 IGECGVFTYEIAETKVTQVMDFARKHQHPLQCVMEKK 97
>gi|49474301|ref|YP_032343.1| hypothetical protein BQ07060 [Bartonella quintana str. Toulouse]
gi|49239805|emb|CAF26195.1| hypothetical protein BQ07060 [Bartonella quintana str. Toulouse]
Length = 123
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 58/128 (45%), Positives = 79/128 (61%), Gaps = 7/128 (5%)
Query: 9 MYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDN 68
M ++ + IL +M K E + + SK++ PKLYRV L ND+
Sbjct: 1 MLQKLMTNSILRIM-------QNEKGKNWDESRHDAVIIPKMRSKLQKPKLYRVFLFNDD 53
Query: 69 YTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQ 128
YTPM+FV+ VL+NFF K E A IML VH G+GECG+Y+YE+AEMKV QV + Q++
Sbjct: 54 YTPMDFVVFVLKNFFKKSFEEATHIMLNVHQNGVGECGIYSYEVAEMKVIQVRECAHQNE 113
Query: 129 YPLQCIME 136
+PLQC+ME
Sbjct: 114 HPLQCVME 121
>gi|86146449|ref|ZP_01064772.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. MED222]
gi|218709067|ref|YP_002416688.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio splendidus
LGP32]
gi|254763826|sp|B7VM32|CLPS_VIBSL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|85835712|gb|EAQ53847.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. MED222]
gi|218322086|emb|CAV18173.1| ATP-dependent Clp protease adaptor protein clpS [Vibrio splendidus
LGP32]
Length = 106
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/97 (48%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + +KV+ P +Y V+L ND+YTPM+FVI +L+ FF D E A +MLKVH++
Sbjct: 9 SPGSDLLEKERTKVKPPAMYNVVLHNDDYTPMDFVIEILERFFSLDIEKATEVMLKVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG Y+ EIAE KV QV YS+++++PL C MEQ
Sbjct: 69 GKAICGTYSAEIAETKVAQVTMYSKENEHPLLCTMEQ 105
>gi|109898690|ref|YP_661945.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoalteromonas
atlantica T6c]
gi|123064521|sp|Q15T97|CLPS_PSEA6 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|109700971|gb|ABG40891.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoalteromonas
atlantica T6c]
gi|332173682|gb|AEE22936.1| ATP-dependent Clp protease adaptor protein ClpS [Glaciecola
agarilytica 4H-3-7+YE-5]
Length = 106
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/106 (48%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+K + + K+ P +Y+VLL ND+YTPM+FVI VL FF D E A
Sbjct: 1 MSKDNTINIEREKQLDT-VKQKLAPPPMYKVLLNNDDYTPMDFVIEVLVRFFNLDSEKAH 59
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IML VH++G CGVY EIAE KV QV Y+++HQ+PL C MEQ
Sbjct: 60 QIMLTVHYRGRAVCGVYTAEIAETKVMQVTQYAKKHQHPLMCTMEQ 105
>gi|325915388|ref|ZP_08177705.1| hypothetical protein XVE_1596 [Xanthomonas vesicatoria ATCC 35937]
gi|325538435|gb|EGD10114.1| hypothetical protein XVE_1596 [Xanthomonas vesicatoria ATCC 35937]
Length = 126
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
+ RM +K E D+ L E +V P Y+VLL+ND+YTPM+FV+ VLQ FF D E
Sbjct: 18 NGRMPRKTSHEHDHGLTVEA-SKPEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLDLE 76
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A +ML VH +G G CGVY+ E+AE KV QV +SR +Q+PL C MEQ
Sbjct: 77 RATQVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 125
>gi|227112014|ref|ZP_03825670.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|253688098|ref|YP_003017288.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|261821257|ref|YP_003259363.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
wasabiae WPP163]
gi|259491248|sp|C6DF43|CLPS_PECCP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|251754676|gb|ACT12752.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|261605270|gb|ACX87756.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
wasabiae WPP163]
Length = 106
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 65/104 (62%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ + + K++ P +Y V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GNNSTWSQSENLTADKQKEKLQPPSMYNVVLNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGV++ E+AE KV QV Y+R++++PL C +E+
Sbjct: 62 MLTVHYQGKAICGVFSAEVAETKVVQVNRYARENEHPLLCTLEK 105
>gi|170727045|ref|YP_001761071.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella woodyi
ATCC 51908]
gi|238688675|sp|B1KIC5|CLPS_SHEWM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|169812392|gb|ACA86976.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella woodyi
ATCC 51908]
Length = 102
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 49/92 (53%), Positives = 65/92 (70%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E R S+V P +Y+V+L ND+YTPM+FVI VLQ FF K E A IML +HHQG G C
Sbjct: 10 VEERVESEVMPPSMYKVILNNDDYTPMDFVIEVLQLFFKKTEEQATDIMLAIHHQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G++ + IAE KV QV ++RQ+Q+PL C +E+
Sbjct: 70 GIFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101
>gi|157375024|ref|YP_001473624.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
sediminis HAW-EB3]
gi|189082481|sp|A8FUH3|CLPS_SHESH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|157317398|gb|ABV36496.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
sediminis HAW-EB3]
Length = 102
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 66/92 (71%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E R S++ P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A IML +H+QG G C
Sbjct: 10 VEERVESELMPPPMYKVILNNDDYTPMDFVIEVLQLFFKKNEQDATDIMLAIHNQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GV+ + IAE KV QV ++RQ+Q+PL C +E+
Sbjct: 70 GVFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101
>gi|253999942|ref|YP_003052005.1| ATP-dependent Clp protease adaptor protein ClpS [Methylovorus sp.
SIP3-4]
gi|253986621|gb|ACT51478.1| ATP-dependent Clp protease adaptor protein ClpS [Methylovorus sp.
SIP3-4]
Length = 103
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 70/95 (73%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ +++ + P +Y+V+L+ND+YTPMEFV+ V+Q FF K E A IMLKVH +G
Sbjct: 8 EGIVTEKQTARPKPPSMYKVILLNDDYTPMEFVVEVIQRFFNKSREQATQIMLKVHTEGA 67
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY ++IAE KVNQV+ Y+R++Q+PLQC ME+
Sbjct: 68 GICGVYPHDIAETKVNQVLGYAREYQHPLQCAMEE 102
>gi|262372530|ref|ZP_06065809.1| substrate modulator for ClpAP [Acinetobacter junii SH205]
gi|262312555|gb|EEY93640.1| substrate modulator for ClpAP [Acinetobacter junii SH205]
Length = 136
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Query: 37 IAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ D+ + V+ + +++ P LY V+L+ND+YTPM+FVI +LQ++F D + A +ML
Sbjct: 33 DSHEDHEGEVVVQTAPPELKRPPLYAVVLLNDDYTPMDFVIEILQSYFGMDFDQASQVML 92
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH++G G GVY +IAE K NQV NY+R +PL C +E K
Sbjct: 93 TVHYEGKGTAGVYPRDIAETKANQVNNYARSQGHPLLCQIEPK 135
>gi|59712373|ref|YP_205149.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio fischeri
ES114]
gi|197335290|ref|YP_002156588.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio fischeri
MJ11]
gi|67460142|sp|Q5E3Y5|CLPS_VIBF1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238690298|sp|B5FG65|CLPS_VIBFM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|59480474|gb|AAW86261.1| specificity factor for ClpA-ClpP chaperone-protease complex [Vibrio
fischeri ES114]
gi|197316780|gb|ACH66227.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio fischeri
MJ11]
Length = 106
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 62/97 (63%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + +++R P +Y+V+L ND+YTPMEFV+ VL FF D E A +ML VH++
Sbjct: 9 SPDSDVLEQEKTELRPPSMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQLMLTVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG + E+AE KV QV YSR +++PL C MEQ
Sbjct: 69 GKAVCGTFTAEVAETKVAQVNTYSRDNEHPLLCTMEQ 105
>gi|227329247|ref|ZP_03833271.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 106
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 63/89 (70%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ K++ P +Y V+L ND+YTPMEFVI VLQ FF D E A +ML VH+QG CGV+
Sbjct: 17 KQKEKLQPPSMYNVVLNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVF 76
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ E+AE KV QV Y+R++++PL C +E+
Sbjct: 77 SAEVAETKVVQVNRYARENEHPLLCTLEK 105
>gi|188576738|ref|YP_001913667.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|188576929|ref|YP_001913858.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|325927856|ref|ZP_08189080.1| hypothetical protein XPE_3120 [Xanthomonas perforans 91-118]
gi|188521190|gb|ACD59135.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|188521381|gb|ACD59326.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|325541696|gb|EGD13214.1| hypothetical protein XPE_3120 [Xanthomonas perforans 91-118]
Length = 93
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 47/87 (54%), Positives = 61/87 (70%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+V P Y+VLL+ND+YTPM+FV+ VL+ FF + E A IML VH +G G CGVY+
Sbjct: 6 KPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQATQIMLHVHTRGRGVCGVYSR 65
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E+AE KV QV +SR +Q+PL C MEQ
Sbjct: 66 EVAESKVAQVNEFSRMNQHPLLCTMEQ 92
>gi|126641956|ref|YP_001084940.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
baumannii ATCC 17978]
gi|169633633|ref|YP_001707369.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
baumannii SDF]
gi|169795754|ref|YP_001713547.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
baumannii AYE]
gi|213157554|ref|YP_002319599.1| ATP-dependent Clp protease adaptor protein [Acinetobacter baumannii
AB0057]
gi|215483239|ref|YP_002325446.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Acinetobacter baumannii AB307-0294]
gi|239503974|ref|ZP_04663284.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
baumannii AB900]
gi|260554817|ref|ZP_05827038.1| substrate modulator for ClpAP [Acinetobacter baumannii ATCC 19606]
gi|294837620|ref|ZP_06782303.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
6013113]
gi|294840916|ref|ZP_06785599.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
6014059]
gi|294856990|ref|ZP_06794759.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
6013150]
gi|301344683|ref|ZP_07225424.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
baumannii AB056]
gi|301511220|ref|ZP_07236457.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
baumannii AB058]
gi|301595568|ref|ZP_07240576.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
baumannii AB059]
gi|126387840|gb|ABO12338.1| putative protease [Acinetobacter baumannii ATCC 17978]
gi|169148681|emb|CAM86547.1| substrate modulator for ClpAP, directs protease activity towards
aggregated proteins [Acinetobacter baumannii AYE]
gi|169152425|emb|CAP01380.1| substrate modulator for ClpAP, directs protease activity towards
aggregated proteins [Acinetobacter baumannii]
gi|213056714|gb|ACJ41616.1| ATP-dependent Clp protease adaptor protein [Acinetobacter baumannii
AB0057]
gi|213988872|gb|ACJ59171.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Acinetobacter baumannii AB307-0294]
gi|260411359|gb|EEX04656.1| substrate modulator for ClpAP [Acinetobacter baumannii ATCC 19606]
gi|322508668|gb|ADX04122.1| clpS [Acinetobacter baumannii 1656-2]
gi|323518276|gb|ADX92657.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
baumannii TCDC-AB0715]
Length = 137
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
D+ + V+ + +++ P LY V+L+ND+YTPM+FVI +LQ +F + +
Sbjct: 28 NPRLSDSQNEDHDGEVVVQTAPPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFAMNLDQ 87
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A +ML VH++G G GVY +IAE K N V NY+R +PL C +E K
Sbjct: 88 ATQVMLTVHYEGKGTAGVYPRDIAETKANLVNNYARSQGHPLLCQIEPK 136
>gi|226944902|ref|YP_002799975.1| ATP-dependent Clp protease adaptor protein ClpS [Azotobacter
vinelandii DJ]
gi|259491243|sp|C1DKZ8|CLPS_AZOVD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|226719829|gb|ACO79000.1| ATP-dependent clp protease adaptor protein, ClpS [Azotobacter
vinelandii DJ]
Length = 120
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
++ E D+ ++VP +Y+V++ ND+YTPM+FV+ VL+ FF + E A
Sbjct: 14 DRPEPREDDSYGVVVQESKPALKVPPMYKVVMFNDDYTPMDFVVEVLEKFFNLNRELATK 73
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML VH +G CG++ ++AE K QV Y+R+ Q+PL C +E+
Sbjct: 74 VMLTVHTEGRAVCGMFTRDVAETKAMQVNQYARECQHPLLCEIEKD 119
>gi|88812888|ref|ZP_01128132.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrococcus
mobilis Nb-231]
gi|88789810|gb|EAR20933.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrococcus
mobilis Nb-231]
Length = 106
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M++ + L + + +V+ P LYRV+L+ND+YTPMEFV+ VLQ FF+ D A
Sbjct: 1 MSRDKAPRREGDLSVK-QAEPQVKRPPLYRVVLLNDDYTPMEFVVEVLQIFFHMDRGKAT 59
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IML VH +G G CGVY ++AE KV+ V ++R++ +PL C ME
Sbjct: 60 QIMLHVHTRGKGVCGVYNRDVAETKVDLVNEHARKNDHPLMCTMEP 105
>gi|82703365|ref|YP_412931.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosospira
multiformis ATCC 25196]
gi|123544045|sp|Q2Y6T2|CLPS_NITMU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|82411430|gb|ABB75539.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosospira
multiformis ATCC 25196]
Length = 102
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 47/97 (48%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 42 NCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
N + + SK++ P +++V+L+ND++TPM+FV+ VLQ FF + E A IMLKVH
Sbjct: 5 NHGEVVLEAKKSKLKPPPMFKVILLNDDFTPMDFVVTVLQTFFSMNREQATQIMLKVHMD 64
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G G CGVY ++A KV QV+ ++RQHQ+PLQC+ME+
Sbjct: 65 GAGVCGVYPNDVASTKVEQVVAFARQHQHPLQCVMEE 101
>gi|212709755|ref|ZP_03317883.1| hypothetical protein PROVALCAL_00803 [Providencia alcalifaciens DSM
30120]
gi|212687566|gb|EEB47094.1| hypothetical protein PROVALCAL_00803 [Providencia alcalifaciens DSM
30120]
Length = 106
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 47/100 (47%), Positives = 62/100 (62%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
F + ++ P +Y+VLL ND+YTPM+FV+ VLQ +F D E A IML V
Sbjct: 6 GTFKTDTIFKDEVEKALQPPSMYKVLLNNDDYTPMDFVVEVLQKYFSFDEERATQIMLDV 65
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H QG G CGVY EIAE K QV ++R+H+YPL C +E+
Sbjct: 66 HFQGKGVCGVYTAEIAETKAAQVNAFAREHEYPLLCTIEK 105
>gi|158522493|ref|YP_001530363.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfococcus
oleovorans Hxd3]
gi|158511319|gb|ABW68286.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfococcus
oleovorans Hxd3]
Length = 104
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ ++V+ P LY+VLL ND+YT MEFV+ +L++ F K E A IML VH G+
Sbjct: 9 QTGRLQKTGTRVKPPSLYKVLLHNDDYTTMEFVVEILRHIFRKSLEDATTIMLNVHRNGV 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G CG++ YEIAE K++ V Y+R+ +PLQC ME++
Sbjct: 69 GCCGLFTYEIAETKIDLVHGYARERGFPLQCSMERE 104
>gi|21242744|ref|NP_642326.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
axonopodis pv. citri str. 306]
gi|84624070|ref|YP_451442.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|289666027|ref|ZP_06487608.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
campestris pv. vasculorum NCPPB702]
gi|289670485|ref|ZP_06491560.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
campestris pv. musacearum NCPPB4381]
gi|294625258|ref|ZP_06703897.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|294666594|ref|ZP_06731833.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
gi|24638421|sp|Q8PL06|CLPS_XANAC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67460158|sp|Q5GZR3|CLPS_XANOR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123521875|sp|Q2P2Q9|CLPS_XANOM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|21108222|gb|AAM36862.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
gi|84368010|dbj|BAE69168.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|292600432|gb|EFF44530.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|292603614|gb|EFF47026.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
Length = 106
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 64/104 (61%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ + + +V P Y+VLL+ND+YTPM+FV+ VL+ FF + E A I
Sbjct: 2 PRNTSHEHDHGLMVEASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQATQI 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH +G G CGVY+ E+AE KV QV +SR +Q+PL C MEQ
Sbjct: 62 MLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 105
>gi|127512494|ref|YP_001093691.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella loihica
PV-4]
gi|166214745|sp|A3QD84|CLPS_SHELP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|126637789|gb|ABO23432.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella loihica
PV-4]
Length = 102
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 66/92 (71%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E R +++ P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A IML +HHQG G C
Sbjct: 10 IEERAETELMPPSMYKVILNNDDYTPMDFVIEVLQLFFNKNEQEATDIMLAIHHQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GV+ + IAE KV QV ++RQ+Q+PL C +E+
Sbjct: 70 GVFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101
>gi|329894886|ref|ZP_08270685.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
proteobacterium IMCC3088]
gi|328922615|gb|EGG29950.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
proteobacterium IMCC3088]
Length = 113
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 32 MNKKGIAEFDNCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
M+++ + D+ V ++ P LY+V+L+ND+YTPMEFV+ VL+ FF + E A
Sbjct: 1 MSEQHPDQHDDGTGLAVAPAKPALKKPPLYKVVLMNDDYTPMEFVVLVLERFFRMNREKA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IML VH QG G CG+Y ++AE K +V +SR++Q+PL C +E
Sbjct: 61 TQIMLAVHTQGKGVCGIYPRDVAETKAYEVNEFSRENQHPLLCEVEP 107
>gi|307946408|ref|ZP_07661743.1| ATP-dependent Clp protease adaptor protein ClpS [Roseibium sp.
TrichSKD4]
gi|307770072|gb|EFO29298.1| ATP-dependent Clp protease adaptor protein ClpS [Roseibium sp.
TrichSKD4]
Length = 110
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 57/93 (61%), Positives = 75/93 (80%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
R K + P LYRVLL+ND+YTPMEFVIHV+++FF K+ E A IML VHH G+GEC
Sbjct: 18 VVTRTKPKTKRPNLYRVLLLNDDYTPMEFVIHVVESFFQKNREEATHIMLHVHHHGVGEC 77
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y+YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 78 GIYSYEVAETKVTQVMDFARKHQHPLQCVMEKK 110
>gi|328543445|ref|YP_004303554.1| ATP-dependent Clp protease adaptor protein ClpS [Polymorphum gilvum
SL003B-26A1]
gi|326413189|gb|ADZ70252.1| ATP-dependent Clp protease adaptor protein ClpS [Polymorphum gilvum
SL003B-26A1]
Length = 109
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 57/102 (55%), Positives = 75/102 (73%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ D + + + P LYRVLL+ND+YTPMEFVIHV++ FF K+ E A IML
Sbjct: 8 DEDADAGTVVVPKTRTVTKRPNLYRVLLLNDDYTPMEFVIHVVERFFQKNREEATRIMLH 67
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VHH G+GECGVY YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 68 VHHHGVGECGVYTYEVAETKVTQVMDFARKHQHPLQCVMEKK 109
>gi|283832492|ref|ZP_06352233.1| ATP-dependent Clp protease adaptor protein ClpS [Citrobacter
youngae ATCC 29220]
gi|291072152|gb|EFE10261.1| ATP-dependent Clp protease adaptor protein ClpS [Citrobacter
youngae ATCC 29220]
Length = 106
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 66/97 (68%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D L +E + ++ P +Y+V+L+ND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDLLAEDKLRDALKPPSMYKVILINDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|167623651|ref|YP_001673945.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
halifaxensis HAW-EB4]
gi|189082479|sp|B0TQ07|CLPS_SHEHH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|167353673|gb|ABZ76286.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
halifaxensis HAW-EB4]
Length = 102
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 46/101 (45%), Positives = 69/101 (68%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
++ +N E ++ + P +Y+V+L ND+YTPM+FVI +LQ FF KD + A IML
Sbjct: 1 MSRTENIEQIEESVEAEFKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLA 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+HH+G G CG+Y + IAE KV QV ++RQ+Q+PL C +E+
Sbjct: 61 IHHKGKGICGIYPFGIAETKVAQVNQFARQNQHPLLCSLEE 101
>gi|121604835|ref|YP_982164.1| ATP-dependent Clp protease adaptor protein ClpS [Polaromonas
naphthalenivorans CJ2]
gi|120593804|gb|ABM37243.1| ATP-dependent Clp protease adaptor protein ClpS [Polaromonas
naphthalenivorans CJ2]
Length = 145
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 19 LALMSFIFMADSRMNKKGIA--------EFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNY 69
+++ I MA + + + K + P++Y+V+L+ND+Y
Sbjct: 16 ISMARMISMATKPPKSPAQPPTPAVKPADVNGGDSVVLERRPQKTKPPQMYQVVLLNDDY 75
Query: 70 TPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQY 129
TPMEFV+ V+Q FF KD ETA IMLK+H G G CGV++ ++A KV+QV +R++ +
Sbjct: 76 TPMEFVVVVIQEFFNKDRETATQIMLKIHLDGKGICGVFSRDVAATKVDQVTEAARKNGH 135
Query: 130 PLQCIMEQ 137
PLQC+ E
Sbjct: 136 PLQCVSEP 143
>gi|37680507|ref|NP_935116.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio vulnificus
YJ016]
gi|320155836|ref|YP_004188215.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio vulnificus
MO6-24/O]
gi|326423943|ref|NP_760980.2| ATP-dependent Clp protease adaptor protein ClpS [Vibrio vulnificus
CMCP6]
gi|39930932|sp|Q7MJ40|CLPS_VIBVY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|37199255|dbj|BAC95087.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
gi|319931148|gb|ADV86012.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio vulnificus
MO6-24/O]
gi|319999322|gb|AAO10507.2| ATP-dependent Clp protease adaptor protein clpS [Vibrio vulnificus
CMCP6]
Length = 106
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 48/97 (49%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + ++++ PK Y V+L ND+YTPM+FVI VL+ FF D + A IMLKVH++
Sbjct: 9 TPDSDLLEKEITQIQPPKKYNVVLNNDDYTPMDFVIDVLERFFSHDLDKATQIMLKVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG Y+ EIAE KV QV YSR++++PL C MEQ
Sbjct: 69 GKAICGTYSAEIAETKVAQVTMYSRENEHPLLCTMEQ 105
>gi|113969987|ref|YP_733780.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
MR-4]
gi|114047222|ref|YP_737772.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
MR-7]
gi|117920199|ref|YP_869391.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
ANA-3]
gi|123130486|sp|Q0HJP4|CLPS_SHESM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123131487|sp|Q0HVZ0|CLPS_SHESR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214747|sp|A0KW16|CLPS_SHESA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|113884671|gb|ABI38723.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
MR-4]
gi|113888664|gb|ABI42715.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
MR-7]
gi|117612531|gb|ABK47985.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
ANA-3]
Length = 102
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 48/92 (52%), Positives = 66/92 (71%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E R S++ P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A IML +HHQG G C
Sbjct: 10 VEERVESELMPPSMYKVILNNDDYTPMDFVIEVLQIFFRKNEQEATDIMLTIHHQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G++ Y IAE KV QV ++RQ+Q+PL C +E+
Sbjct: 70 GIFPYGIAETKVIQVNQFARQNQHPLLCSLEK 101
>gi|91788801|ref|YP_549753.1| ATP-dependent Clp protease adaptor protein ClpS [Polaromonas sp.
JS666]
gi|91698026|gb|ABE44855.1| ATP-dependent Clp protease adaptor protein ClpS [Polaromonas sp.
JS666]
Length = 125
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 9/130 (6%)
Query: 8 SMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
SM + + L + + D+ R K + P++Y+V+L+ND
Sbjct: 3 SMASKSPKSPALPPTPVVR-------PDEVNGGDSV--VLERRPQKTKPPQMYQVVLLND 53
Query: 68 NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
+YTPMEFV+ +LQ FF KDHETA IMLK+H G G CGV++ ++A KV+QV +R++
Sbjct: 54 DYTPMEFVVVILQEFFNKDHETATQIMLKIHLDGKGVCGVFSKDVAATKVDQVTEAARKN 113
Query: 128 QYPLQCIMEQ 137
+PLQC+ E
Sbjct: 114 GHPLQCVSEP 123
>gi|291295834|ref|YP_003507232.1| ATP-dependent Clp protease adaptor protein ClpS [Meiothermus ruber
DSM 1279]
gi|290470793|gb|ADD28212.1| ATP-dependent Clp protease adaptor protein ClpS [Meiothermus ruber
DSM 1279]
Length = 98
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 47/96 (48%), Positives = 62/96 (64%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
++ R + R P Y+VLL+ND+YTPM+FV+ VL +F K A IML+VHH G+
Sbjct: 3 DTATKTRSQTATRTPPRYKVLLLNDDYTPMDFVVEVLMRYFKKSKLEATRIMLQVHHAGV 62
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G GVY +EIAE KVNQVM + +PLQC ME +
Sbjct: 63 GVAGVYPFEIAETKVNQVMAAASAEGHPLQCTMEPE 98
>gi|157962354|ref|YP_001502388.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
pealeana ATCC 700345]
gi|189082480|sp|A8H5L6|CLPS_SHEPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|157847354|gb|ABV87853.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
pealeana ATCC 700345]
Length = 102
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 63/84 (75%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
++ P +Y+V+L ND+YTPM+FVI +LQ FF KD + A IML +HH+G G CG+Y + IA
Sbjct: 18 LKQPSMYKVILNNDDYTPMDFVIEILQLFFKKDEQQATEIMLAIHHKGKGICGIYPFGIA 77
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
E KV QV ++RQ+Q+PL C +E+
Sbjct: 78 ETKVAQVNQFARQNQHPLLCSLEE 101
>gi|317047538|ref|YP_004115186.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. At-9b]
gi|316949155|gb|ADU68630.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. At-9b]
Length = 131
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 64/91 (70%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E + ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +MLKVH+QG CG
Sbjct: 40 EDKVREGLKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDVERATQLMLKVHYQGKAICG 99
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
V+ E+AE KV QV Y+R++++PL C +E+
Sbjct: 100 VFTAEVAETKVAQVNIYARENEHPLLCTLEK 130
>gi|220904698|ref|YP_002480010.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868997|gb|ACL49332.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 106
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 64/96 (66%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
N +S+V K++ P YRVLL ND+YT M+FV+ VL + F K + A IML VH QG
Sbjct: 9 NDGESQVIVEKKLKEPDRYRVLLHNDDYTSMDFVVAVLCSIFNKTTQEATAIMLNVHQQG 68
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G+CGVY +E+AE KV +V +R +PL+C ME+
Sbjct: 69 VGQCGVYTHEVAETKVKRVHQAARAAGFPLKCTMEK 104
>gi|24374169|ref|NP_718212.1| hypothetical protein SO_2627 [Shewanella oneidensis MR-1]
gi|37077213|sp|Q8EDW4|CLPS_SHEON RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|24348676|gb|AAN55656.1|AE015704_7 conserved hypothetical protein [Shewanella oneidensis MR-1]
Length = 102
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 66/92 (71%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E R S++ P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A IML +HHQG G C
Sbjct: 10 VEERVESELMPPSMYKVILNNDDYTPMDFVIEVLQIFFRKNEQEATDIMLTIHHQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G++ + IAE KV QV ++RQ+Q+PL C +E+
Sbjct: 70 GIFPFGIAETKVIQVNQFARQNQHPLLCSLEK 101
>gi|226954273|ref|ZP_03824737.1| protease [Acinetobacter sp. ATCC 27244]
gi|294650477|ref|ZP_06727836.1| protease [Acinetobacter haemolyticus ATCC 19194]
gi|226835001|gb|EEH67384.1| protease [Acinetobacter sp. ATCC 27244]
gi|292823620|gb|EFF82464.1| protease [Acinetobacter haemolyticus ATCC 19194]
Length = 130
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 62/110 (56%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
E +++ P LY V+L+ND+YTPM+FVI VLQ++F D +
Sbjct: 19 HLNPRLSDSHEEHEGEVVVQTAPPELKRPPLYAVVLMNDDYTPMDFVIEVLQSYFGMDFD 78
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A +ML VH++G G G+Y +IAE K NQV NY+R +PL C +E +
Sbjct: 79 QASQVMLTVHYEGKGTAGIYPRDIAETKANQVNNYARSQGHPLLCQIEPE 128
>gi|262279297|ref|ZP_06057082.1| substrate modulator for ClpAP [Acinetobacter calcoaceticus RUH2202]
gi|293607903|ref|ZP_06690206.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|299769891|ref|YP_003731917.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
DR1]
gi|262259648|gb|EEY78381.1| substrate modulator for ClpAP [Acinetobacter calcoaceticus RUH2202]
gi|292828476|gb|EFF86838.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|298699979|gb|ADI90544.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter sp.
DR1]
gi|325122454|gb|ADY81977.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
calcoaceticus PHEA-2]
Length = 137
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 35 KGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
D+ + V+ + +++ P LY V+L+ND+YTPM+FVI +LQ +F + + A +
Sbjct: 32 SDSQNEDHDGEVVVQTAPPELKRPPLYAVVLMNDDYTPMDFVIEILQQYFAMNLDQATQV 91
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
ML VH++G G GVY +IAE K N V NY+R +PL C +E K
Sbjct: 92 MLTVHYEGKGIAGVYPRDIAETKANLVNNYARSQGHPLLCQIEPK 136
>gi|257095587|ref|YP_003169228.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257048111|gb|ACV37299.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 102
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/101 (45%), Positives = 66/101 (65%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+A ++++ P LY+VLL+ND++TPM+FVI VLQ FF D E A IMLK
Sbjct: 1 MATKHQDSSLLEARPTQLKPPPLYKVLLLNDDFTPMDFVIVVLQRFFGMDREHATRIMLK 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH +G G CGV+ ++A KV QV ++R +Q+PL C+ME+
Sbjct: 61 VHTEGRGVCGVFPRDVAATKVEQVTTFARSNQHPLACVMEE 101
>gi|289679172|ref|ZP_06500062.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudomonas
syringae pv. syringae FF5]
Length = 94
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 58/90 (64%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
++ P +Y+V+L ND+YTPM+FV+ VL+ FF + E A +ML VH +G CG++
Sbjct: 4 DAKPALQAPPMYKVVLFNDDYTPMDFVVEVLEVFFNLNRELATKVMLAVHTEGRAVCGLF 63
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+IAE K QV Y+R+ Q+PL C +E+
Sbjct: 64 TRDIAETKAMQVNQYARESQHPLLCEIEKD 93
>gi|229525754|ref|ZP_04415159.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
bv. albensis VL426]
gi|229339335|gb|EEO04352.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
bv. albensis VL426]
Length = 106
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 63/97 (64%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + + V+ P +Y V+L ND+YTPM+FVI +L+ FF D E A +MLKVH++
Sbjct: 9 SPDFDLLEKEKTAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG + E+AE KV QV YSR++++PL C MEQ
Sbjct: 69 GKAICGTFTAEVAETKVAQVTRYSRENEHPLLCTMEQ 105
>gi|238792421|ref|ZP_04636055.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
intermedia ATCC 29909]
gi|238728347|gb|EEQ19867.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
intermedia ATCC 29909]
Length = 106
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 63/104 (60%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ + + ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GNNNDWLNFEHLVKDKQKEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 62 MLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105
>gi|228311827|pdb|2W9R|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps
gi|228311836|pdb|2WA9|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
gi|228311837|pdb|2WA9|B Chain B, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
gi|228311838|pdb|2WA9|C Chain C, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
gi|228311839|pdb|2WA9|D Chain D, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
gi|228311840|pdb|2WA9|E Chain E, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
gi|228311841|pdb|2WA9|F Chain F, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
gi|228311842|pdb|2WA9|G Chain G, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - Trp
Peptide Structure
Length = 108
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|119476169|ref|ZP_01616521.1| ATP-dependent Clp protease adaptor protein ClpS [marine gamma
proteobacterium HTCC2143]
gi|119450796|gb|EAW32030.1| ATP-dependent Clp protease adaptor protein ClpS [marine gamma
proteobacterium HTCC2143]
Length = 124
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 37 IAEFDNCLDSEV-RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ D V ++ P +Y+V+L+ND+YTPMEFV+ +L+ FF E A +ML
Sbjct: 20 PPGNEGDGDLAVAELKPALKRPPMYKVVLLNDDYTPMEFVVEILETFFSMGREQATQVML 79
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
VH G G CG++ ++AE K QV Y+R+ +PL +E
Sbjct: 80 AVHTHGKGVCGLFTRDVAETKAAQVNQYARESHHPLLAEVE 120
>gi|319787138|ref|YP_004146613.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoxanthomonas
suwonensis 11-1]
gi|317465650|gb|ADV27382.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoxanthomonas
suwonensis 11-1]
Length = 108
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/87 (50%), Positives = 61/87 (70%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
++ P +Y+V+L+ND+YTPM+FV+ VLQ FF D E A +ML VH +G G CGV+
Sbjct: 21 RPEIAPPPMYQVILLNDDYTPMDFVVAVLQQFFGLDLERATQVMLHVHTRGRGVCGVFTR 80
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E+AE KV QV +SR +Q+PL C ME+
Sbjct: 81 EVAESKVAQVNEFSRMNQHPLLCTMEK 107
>gi|261344322|ref|ZP_05971966.1| ATP-dependent Clp protease adaptor protein ClpS [Providencia
rustigianii DSM 4541]
gi|282567927|gb|EFB73462.1| ATP-dependent Clp protease adaptor protein ClpS [Providencia
rustigianii DSM 4541]
Length = 106
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/100 (47%), Positives = 62/100 (62%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
F + ++ P +Y+VLL ND+YTPM+FV+ VLQ FF D E A IML V
Sbjct: 6 GTFKTDTIFKNEVEQTLQPPSMYKVLLNNDDYTPMDFVVEVLQKFFSFDEERATQIMLDV 65
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H QG G CGVY E+AE K QV ++R+H+YPL C +E+
Sbjct: 66 HFQGKGSCGVYTAEVAETKAAQVNAFAREHEYPLLCTIEK 105
>gi|33301910|sp|Q8DAS0|CLPS_VIBVU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
Length = 106
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/97 (49%), Positives = 64/97 (65%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + ++++ PK Y V+L ND+YTPM+FVI VL+ FF D A IMLKVH++
Sbjct: 9 TPDSDLLEKEITQIQPPKKYNVVLNNDDYTPMDFVIDVLERFFSHDLNKATQIMLKVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG Y+ EIAE KV QV YSR++++PL C MEQ
Sbjct: 69 GKAICGTYSAEIAETKVAQVTMYSRENEHPLLCTMEQ 105
>gi|300310730|ref|YP_003774822.1| ATP-dependent Clp protease adaptor protein [Herbaspirillum
seropedicae SmR1]
gi|300073515|gb|ADJ62914.1| ATP-dependent Clp protease adaptor protein [Herbaspirillum
seropedicae SmR1]
Length = 104
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/97 (50%), Positives = 68/97 (70%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
++ R SK++ P +Y+VLL+ND+YTPMEFV+ V+Q +F KD ETA IMLKVH
Sbjct: 7 NDGGTVLERQESKLKPPPMYQVLLLNDDYTPMEFVVAVIQQYFNKDRETATQIMLKVHRD 66
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G G CGVY +IA KV V+ ++R+ +PLQC+ME+
Sbjct: 67 GKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEE 103
>gi|271500837|ref|YP_003333862.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
Ech586]
gi|270344392|gb|ACZ77157.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
Ech586]
Length = 106
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 66/104 (63%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
++ ++ ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GNHSTGPQTDDLTKEHYTEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGVY+ E+AE KV QV Y+R++++PL C +E+
Sbjct: 62 MLTVHYQGKAICGVYSAEVAETKVAQVNRYARENEHPLLCTLEK 105
>gi|148261822|ref|YP_001235949.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
cryptum JF-5]
gi|146403503|gb|ABQ32030.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
cryptum JF-5]
Length = 147
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 23 SFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
+ I+ A + G D + ++ + P LYRV++ ND+YTPMEFV+ L
Sbjct: 34 NRIYGAIGMDDFDGQDGMDPVF--ATQARARAKRPPLYRVMMFNDDYTPMEFVVATLVGL 91
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
F K + A I L++H +G+G CG++ YEIAE K+ QV+ +R++Q+PLQC++E
Sbjct: 92 FGKTTDEAGRIALRIHRRGVGVCGIFTYEIAETKMIQVLELARENQHPLQCMIEP 146
>gi|120598597|ref|YP_963171.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
W3-18-1]
gi|146293324|ref|YP_001183748.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
putrefaciens CN-32]
gi|166214746|sp|A4Y7L6|CLPS_SHEPC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214748|sp|A1RIX2|CLPS_SHESW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|120558690|gb|ABM24617.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella sp.
W3-18-1]
gi|145565014|gb|ABP75949.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
putrefaciens CN-32]
gi|319426624|gb|ADV54698.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
putrefaciens 200]
Length = 102
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 66/92 (71%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E R S++ P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A IML +HHQG G C
Sbjct: 10 VEERVESELMPPSMYKVILNNDDYTPMDFVIEVLQVFFRKNEQEATDIMLTIHHQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G++ + IAE KV QV ++RQ+Q+PL C +E+
Sbjct: 70 GIFPFGIAETKVIQVNQFARQNQHPLLCSLEK 101
>gi|163868096|ref|YP_001609300.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
tribocorum CIP 105476]
gi|161017747|emb|CAK01305.1| Clp protease adaptor protein [Bartonella tribocorum CIP 105476]
Length = 123
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 57/116 (49%), Positives = 77/116 (66%)
Query: 21 LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
+++ I K E + + +K++ PKLYRVLL+ND+YTPM+FV+ VL+
Sbjct: 6 IINSIPHIMHNEKGKNWDEGRHSAVIIPKARAKLQKPKLYRVLLLNDDYTPMDFVVFVLK 65
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
NFF K E A IML VHH GIGECG Y YE+AEMK+ QV +RQ+++PLQC+ME
Sbjct: 66 NFFKKSFEEATRIMLNVHHNGIGECGTYTYEVAEMKIVQVRECARQNEHPLQCVME 121
>gi|148977557|ref|ZP_01814136.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrionales
bacterium SWAT-3]
gi|145963208|gb|EDK28475.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrionales
bacterium SWAT-3]
Length = 106
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/97 (48%), Positives = 66/97 (68%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + ++KV+ P +Y V+L ND+YTPM+FVI +L+ FF D E A +MLKVH++
Sbjct: 9 SPGSDLLEKEATKVKPPAMYNVVLNNDDYTPMDFVIEILERFFSLDIEKATEVMLKVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG Y+ EIAE KV QV YS+++++PL C MEQ
Sbjct: 69 GKAICGTYSAEIAETKVAQVTMYSKENEHPLLCTMEQ 105
>gi|237732131|ref|ZP_04562612.1| ATP-dependent Clp protease adapter protein clpS [Citrobacter sp.
30_2]
gi|226907670|gb|EEH93588.1| ATP-dependent Clp protease adapter protein clpS [Citrobacter sp.
30_2]
Length = 106
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/97 (48%), Positives = 66/97 (68%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D L +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDLLAEDKLRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|237746972|ref|ZP_04577452.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacter
formigenes HOxBLS]
gi|229378323|gb|EEO28414.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacter
formigenes HOxBLS]
Length = 143
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 66/90 (73%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
++ ++ P +YRVLL+ND++TPM+FVI VLQ +F+K+ E A IMLKVH +G G CG+
Sbjct: 53 EETATVLKPPPMYRVLLLNDDFTPMDFVIFVLQEYFHKNAEMATRIMLKVHREGKGVCGI 112
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ +IA KV QV+ ++RQ +PLQC ME+
Sbjct: 113 FPKDIANTKVEQVIRHARQEGHPLQCTMEE 142
>gi|258621690|ref|ZP_05716721.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
VM573]
gi|258626363|ref|ZP_05721210.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
VM603]
gi|262165415|ref|ZP_06033152.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
VM223]
gi|262171823|ref|ZP_06039501.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
MB-451]
gi|258581415|gb|EEW06317.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
VM603]
gi|258585921|gb|EEW10639.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
VM573]
gi|261892899|gb|EEY38885.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
MB-451]
gi|262025131|gb|EEY43799.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio mimicus
VM223]
Length = 106
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 64/97 (65%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
LD + + V+ P +Y V+L ND+YTPM+FVI +L+ FF D E A +MLKVH++
Sbjct: 9 SPDLDLLEKEKTAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG + E+AE KV QV YSR++++PL C MEQ
Sbjct: 69 GKAICGTFTAEVAETKVAQVTMYSRENEHPLLCTMEQ 105
>gi|238757595|ref|ZP_04618779.1| ATP-dependent Clp protease adapter protein clpS [Yersinia aldovae
ATCC 35236]
gi|238704100|gb|EEP96633.1| ATP-dependent Clp protease adapter protein clpS [Yersinia aldovae
ATCC 35236]
Length = 106
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 64/104 (61%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ + ++ ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GNNNDWLNFEHLVKDKYKEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 62 MLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105
>gi|224824763|ref|ZP_03697870.1| ATP-dependent Clp protease adaptor protein ClpS [Lutiella
nitroferrum 2002]
gi|224603256|gb|EEG09432.1| ATP-dependent Clp protease adaptor protein ClpS [Lutiella
nitroferrum 2002]
Length = 102
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/87 (54%), Positives = 68/87 (78%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+K R P +Y+VLL+ND+YTPM+FV+ +LQ+FF+K+ E A IML+VH QG G CGVY
Sbjct: 15 RAKTRPPSMYKVLLLNDDYTPMDFVVQILQHFFHKNREQATSIMLQVHTQGRGVCGVYTK 74
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
++A KV QV+ +++ HQ+PLQC+ME+
Sbjct: 75 DVAATKVEQVLQFAKAHQHPLQCVMEE 101
>gi|325919554|ref|ZP_08181568.1| hypothetical protein XGA_0507 [Xanthomonas gardneri ATCC 19865]
gi|325549963|gb|EGD20803.1| hypothetical protein XGA_0507 [Xanthomonas gardneri ATCC 19865]
Length = 106
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M + E+D+ L E +V P Y+VLL+ND+YTPM+FV+ VL+ FF E A
Sbjct: 1 MPRNTTHEYDHGLMVEA-SKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLSLEQAT 59
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH +G G CGVY+ E+AE KV QV +SR +Q+PL C MEQ
Sbjct: 60 QVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 105
>gi|85713420|ref|ZP_01044415.1| ATP-dependent Clp protease adaptor protein ClpS [Idiomarina baltica
OS145]
gi|85692756|gb|EAQ30759.1| ATP-dependent Clp protease adaptor protein ClpS [Idiomarina baltica
OS145]
Length = 104
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 65/94 (69%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
D E +++ P +Y+V+L ND+YTPM+FVI VL FF ++E A ML+VH++G
Sbjct: 11 DVEEESKHELKPPSMYKVILNNDDYTPMDFVIEVLIRFFRMNNERATDTMLQVHYKGKAV 70
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CGVY+ EIAE KV QV Y+R++Q+PL C ME +
Sbjct: 71 CGVYSAEIAETKVVQVNQYARENQHPLLCTMEHE 104
>gi|254438854|ref|ZP_05052348.1| ATP-dependent Clp protease adaptor protein ClpS [Octadecabacter
antarcticus 307]
gi|198254300|gb|EDY78614.1| ATP-dependent Clp protease adaptor protein ClpS [Octadecabacter
antarcticus 307]
Length = 113
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 69/94 (73%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
++ +K + P LY+V+++ND+YTPMEFV+HVL+ FF H+ + IM+ VH +G+
Sbjct: 20 GVKLETRTKTKRPPLYKVMILNDDYTPMEFVVHVLERFFSLTHDQSVDIMMAVHKKGLAV 79
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GV+++EIAE KV QVM+ + +HQ+PLQC ME++
Sbjct: 80 VGVFSHEIAETKVAQVMDLAARHQHPLQCTMEKE 113
>gi|254450586|ref|ZP_05064023.1| ATP-dependent Clp protease adaptor protein ClpS [Octadecabacter
antarcticus 238]
gi|198264992|gb|EDY89262.1| ATP-dependent Clp protease adaptor protein ClpS [Octadecabacter
antarcticus 238]
Length = 107
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/95 (46%), Positives = 69/95 (72%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+ ++ +K + P LY+V+++ND+YTPMEFV+HVL+ FF H+ + IML VH +G+
Sbjct: 13 IGIKLETRTKTKRPPLYKVMILNDDYTPMEFVVHVLERFFSLTHDQSVEIMLAVHKKGLA 72
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GV+++EIAE KV VM+ + +HQ+PLQC ME++
Sbjct: 73 VVGVFSHEIAETKVALVMDLAARHQHPLQCTMEKE 107
>gi|119944513|ref|YP_942193.1| ATP-dependent Clp protease adaptor protein ClpS [Psychromonas
ingrahamii 37]
gi|119863117|gb|ABM02594.1| ATP-dependent Clp protease adaptor protein ClpS [Psychromonas
ingrahamii 37]
Length = 108
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 52/107 (48%), Positives = 76/107 (71%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ K + N D+ + +K+R P +Y VLL ND+YTPM+FVI VLQ FF D++ A
Sbjct: 1 MSDKKAPKTVNKSDTIEKVETKLRPPSMYNVLLHNDDYTPMDFVIDVLQQFFRLDNQKAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML VH++ +G CG ++ EIAE KV QVMNY+RQ+++PL+C ME++
Sbjct: 61 EVMLNVHYKEVGICGTFSAEIAETKVMQVMNYARQNEHPLRCSMEKE 107
>gi|190574283|ref|YP_001972128.1| putative ATP-dependent Clp protease adaptor protein ClpS
[Stenotrophomonas maltophilia K279a]
gi|229889824|sp|B2FQX5|CLPS_STRMK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|190012205|emb|CAQ45828.1| putative ATP-dependent Clp protease adaptor protein ClpS
[Stenotrophomonas maltophilia K279a]
Length = 108
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
M + + + V +V P Y+V+L+ND+YTPM+FV+ VLQ FF D + A
Sbjct: 1 MPHESSPDSQHEHGVAVEAARPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH +G G CGV+ E+AE KV QV YSR +Q+PL C ME+
Sbjct: 61 TQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEK 107
>gi|312795291|ref|YP_004028213.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
rhizoxinica HKI 454]
gi|312167066|emb|CBW74069.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
rhizoxinica HKI 454]
Length = 104
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 67/95 (70%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R K + P +YRV+L+ND++TPMEFV+ V+Q +F KD +TA IMLKVH++G
Sbjct: 9 DGTVLERQEHKAKPPSMYRVVLLNDDFTPMEFVVMVIQQYFNKDRDTATQIMLKVHYEGR 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 69 GICGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|242239694|ref|YP_002987875.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
Ech703]
gi|242131751|gb|ACS86053.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya dadantii
Ech703]
Length = 106
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/103 (43%), Positives = 64/103 (62%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
++ ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +M
Sbjct: 3 NHNTGPQVEGQTKDLHEEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L VH+QG CGVY+ E+AE KV QV Y+R++++PL C +E+
Sbjct: 63 LTVHYQGKAICGVYSAEVAETKVAQVNRYARENEHPLLCTLEK 105
>gi|90415922|ref|ZP_01223855.1| hypothetical protein GB2207_01777 [marine gamma proteobacterium
HTCC2207]
gi|90332296|gb|EAS47493.1| hypothetical protein GB2207_01777 [marine gamma proteobacterium
HTCC2207]
Length = 114
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M++ + + + +++E K++ P +++V+L+ND+YTPMEFV+ +L+ FF K
Sbjct: 1 MSNDKNPPAWQHDGNTVVETE---RPKLKKPSMFKVVLLNDDYTPMEFVVELLEKFFSKT 57
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E A IML +H G G CG+Y ++AE K V YSR HQ+PL C +E
Sbjct: 58 RENATRIMLSIHTDGKGVCGIYTKDVAETKAGTVNQYSRDHQHPLLCEVEP 108
>gi|251789967|ref|YP_003004688.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya zeae
Ech1591]
gi|247538588|gb|ACT07209.1| ATP-dependent Clp protease adaptor protein ClpS [Dickeya zeae
Ech1591]
Length = 106
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 66/104 (63%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
++ ++ ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GNHSTGPQTDDLTKEHYTEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGVY+ E+AE KV QV Y+R++++PL C +E+
Sbjct: 62 MLTVHYQGKAICGVYSAEVAETKVEQVNRYARENEHPLLCTLEK 105
>gi|15641156|ref|NP_230788.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121587408|ref|ZP_01677177.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
2740-80]
gi|121726248|ref|ZP_01679538.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
V52]
gi|147674267|ref|YP_001216663.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
O395]
gi|153214234|ref|ZP_01949269.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
1587]
gi|153802564|ref|ZP_01957150.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
MZO-3]
gi|153816957|ref|ZP_01969624.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
NCTC 8457]
gi|153821999|ref|ZP_01974666.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
B33]
gi|153826033|ref|ZP_01978700.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
MZO-2]
gi|153828695|ref|ZP_01981362.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
623-39]
gi|227081316|ref|YP_002809867.1| ATP-dependent Clp protease adaptor protein [Vibrio cholerae M66-2]
gi|229505262|ref|ZP_04394772.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae BX
330286]
gi|229511068|ref|ZP_04400547.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
B33]
gi|229515526|ref|ZP_04404985.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
TMA 21]
gi|229518188|ref|ZP_04407632.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
RC9]
gi|229520427|ref|ZP_04409852.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae TM
11079-80]
gi|229529768|ref|ZP_04419158.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
12129(1)]
gi|229608281|ref|YP_002878929.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
MJ-1236]
gi|254225532|ref|ZP_04919142.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
V51]
gi|254291568|ref|ZP_04962358.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
AM-19226]
gi|254848271|ref|ZP_05237621.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
MO10]
gi|255745555|ref|ZP_05419503.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholera
CIRS 101]
gi|262158371|ref|ZP_06029487.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
INDRE 91/1]
gi|262170183|ref|ZP_06037871.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
RC27]
gi|297578745|ref|ZP_06940673.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
RC385]
gi|298498752|ref|ZP_07008559.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
MAK 757]
gi|12230810|sp|Q9KSW3|CLPS_VIBCH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|172047399|sp|A5F294|CLPS_VIBC3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|254763825|sp|C3LLJ0|CLPS_VIBCM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|9655616|gb|AAF94302.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121548328|gb|EAX58392.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
2740-80]
gi|121631194|gb|EAX63567.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
V52]
gi|124115483|gb|EAY34303.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
1587]
gi|124121878|gb|EAY40621.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
MZO-3]
gi|125622002|gb|EAZ50326.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
V51]
gi|126512544|gb|EAZ75138.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
NCTC 8457]
gi|126520464|gb|EAZ77687.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
B33]
gi|146316150|gb|ABQ20689.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
O395]
gi|148875848|gb|EDL73983.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
623-39]
gi|149740253|gb|EDM54400.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
MZO-2]
gi|150422520|gb|EDN14477.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
AM-19226]
gi|227009204|gb|ACP05416.1| ATP-dependent Clp protease adaptor protein [Vibrio cholerae M66-2]
gi|227013010|gb|ACP09220.1| ATP-dependent Clp protease adaptor protein [Vibrio cholerae O395]
gi|229333542|gb|EEN99028.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
12129(1)]
gi|229342525|gb|EEO07518.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae TM
11079-80]
gi|229344903|gb|EEO09877.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
RC9]
gi|229347295|gb|EEO12255.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
TMA 21]
gi|229351033|gb|EEO15974.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
B33]
gi|229357485|gb|EEO22402.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae BX
330286]
gi|229370936|gb|ACQ61359.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
MJ-1236]
gi|254843976|gb|EET22390.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
MO10]
gi|255736630|gb|EET92027.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholera
CIRS 101]
gi|262021352|gb|EEY40065.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
RC27]
gi|262029812|gb|EEY48460.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
INDRE 91/1]
gi|297536339|gb|EFH75172.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
RC385]
gi|297543085|gb|EFH79135.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
MAK 757]
gi|327483847|gb|AEA78254.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio cholerae
LMA3894-4]
Length = 106
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 63/97 (64%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + + V+ P +Y V+L ND+YTPM+FVI +L+ FF D E A +MLKVH++
Sbjct: 9 SPDFDLLEKEKTAVKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG + E+AE KV QV YSR++++PL C MEQ
Sbjct: 69 GKAICGTFTAEVAETKVAQVTMYSRENEHPLLCTMEQ 105
>gi|285018228|ref|YP_003375939.1| ATP-dependent clp protease adaptor protein clps [Xanthomonas
albilineans GPE PC73]
gi|283473446|emb|CBA15951.1| putative atp-dependent clp protease adaptor protein clps
[Xanthomonas albilineans]
Length = 94
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/87 (54%), Positives = 60/87 (68%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+ P +Y+VLL+ND+YTPMEFV+ VLQ FF D E A +ML VH +G G CGVY
Sbjct: 7 KPETARPPMYQVLLLNDDYTPMEFVVTVLQQFFALDLERATQVMLHVHTRGRGVCGVYTR 66
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E+AE KV QV +SR +Q+PL C ME+
Sbjct: 67 EVAESKVAQVNEFSRMNQHPLLCTMEK 93
>gi|53718539|ref|YP_107525.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei K96243]
gi|53725847|ref|YP_103843.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei ATCC 23344]
gi|67642115|ref|ZP_00440876.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei GB8 horse 4]
gi|76810861|ref|YP_332526.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 1710b]
gi|121600243|ref|YP_991923.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei SAVP1]
gi|124384404|ref|YP_001027038.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei NCTC 10229]
gi|126440545|ref|YP_001058010.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 668]
gi|126448935|ref|YP_001081687.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei NCTC 10247]
gi|126455350|ref|YP_001065244.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 1106a]
gi|134281101|ref|ZP_01767810.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 305]
gi|167003875|ref|ZP_02269654.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei PRL-20]
gi|167718445|ref|ZP_02401681.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei DM98]
gi|167737495|ref|ZP_02410269.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 14]
gi|167814613|ref|ZP_02446293.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 91]
gi|167823083|ref|ZP_02454554.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 9]
gi|167844644|ref|ZP_02470152.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei B7210]
gi|167893175|ref|ZP_02480577.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 7894]
gi|167901629|ref|ZP_02488834.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei NCTC 13177]
gi|167909878|ref|ZP_02496969.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 112]
gi|167917901|ref|ZP_02504992.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei BCC215]
gi|217420084|ref|ZP_03451590.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 576]
gi|226194397|ref|ZP_03789995.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei Pakistan 9]
gi|237811161|ref|YP_002895612.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei MSHR346]
gi|242318006|ref|ZP_04817022.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 1106b]
gi|254178824|ref|ZP_04885478.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei ATCC 10399]
gi|254181505|ref|ZP_04888102.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 1655]
gi|254196779|ref|ZP_04903203.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei S13]
gi|254202547|ref|ZP_04908910.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei FMH]
gi|254207884|ref|ZP_04914234.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei JHU]
gi|254261197|ref|ZP_04952251.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 1710a]
gi|254296418|ref|ZP_04963875.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 406e]
gi|254298242|ref|ZP_04965694.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 406e]
gi|67460237|sp|Q62HH7|CLPS_BURMA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67460244|sp|Q63WJ1|CLPS_BURPS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123600017|sp|Q3JV77|CLPS_BURP1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|158513522|sp|A3NSC3|CLPS_BURP0 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214726|sp|A3MN51|CLPS_BURM7 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214727|sp|A2S519|CLPS_BURM9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214728|sp|A1V120|CLPS_BURMS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214729|sp|A3N6N9|CLPS_BURP6 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|52208953|emb|CAH34892.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52429270|gb|AAU49863.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei ATCC 23344]
gi|76580314|gb|ABA49789.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 1710b]
gi|121229053|gb|ABM51571.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei SAVP1]
gi|124292424|gb|ABN01693.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei NCTC 10229]
gi|126220038|gb|ABN83544.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 668]
gi|126228992|gb|ABN92532.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 1106a]
gi|126241805|gb|ABO04898.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei NCTC 10247]
gi|134247407|gb|EBA47492.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 305]
gi|147746794|gb|EDK53871.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei FMH]
gi|147751778|gb|EDK58845.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei JHU]
gi|157806177|gb|EDO83347.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 406e]
gi|157808080|gb|EDO85250.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 406e]
gi|160694738|gb|EDP84746.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei ATCC 10399]
gi|169653522|gb|EDS86215.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei S13]
gi|184212043|gb|EDU09086.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 1655]
gi|217397388|gb|EEC37404.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 576]
gi|225933482|gb|EEH29471.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei Pakistan 9]
gi|237503292|gb|ACQ95610.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei MSHR346]
gi|238523195|gb|EEP86635.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei GB8 horse 4]
gi|242141245|gb|EES27647.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 1106b]
gi|243060669|gb|EES42855.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
mallei PRL-20]
gi|254219886|gb|EET09270.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
pseudomallei 1710a]
Length = 104
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 67/95 (70%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD ETA IMLKVH +G
Sbjct: 9 DSSVLERKEQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLKVHREGR 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 69 GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|228311830|pdb|2WA8|A Chain A, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - The
Phe Peptide Structure
gi|228311832|pdb|2WA8|C Chain C, Structural Basis Of N-End Rule Substrate Recognition In
Escherichia Coli By The Clpap Adaptor Protein Clps - The
Phe Peptide Structure
Length = 107
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|212634694|ref|YP_002311219.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
piezotolerans WP3]
gi|226706569|sp|B8CLI1|CLPS_SHEPW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|212556178|gb|ACJ28632.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
piezotolerans WP3]
Length = 102
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
++ P +Y+V+L ND+YTPM+FVI +LQ FF KD A IML +HH+G G CG+Y + IA
Sbjct: 18 LKQPSMYKVILNNDDYTPMDFVIEILQLFFRKDEAQATEIMLAIHHKGKGICGIYPFGIA 77
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
E KV QV ++RQ+++PL C +E+
Sbjct: 78 ETKVAQVNQFARQNEHPLLCSLEE 101
>gi|194365699|ref|YP_002028309.1| ATP-dependent Clp protease adaptor protein ClpS [Stenotrophomonas
maltophilia R551-3]
gi|238693433|sp|B4SIN7|CLPS_STRM5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|194348503|gb|ACF51626.1| ATP-dependent Clp protease adaptor protein ClpS [Stenotrophomonas
maltophilia R551-3]
Length = 108
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 32 MNKKGIAEFDNCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
M ++ + + V +V P Y+V+L+ND+YTPM+FV+ VLQ FF D + A
Sbjct: 1 MPRESSPDSHHEHGVAVEPARPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFTMDLDKA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH +G G CGV+ E+AE KV QV YSR +Q+PL C ME+
Sbjct: 61 TQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEK 107
>gi|254506183|ref|ZP_05118327.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus 16]
gi|219551001|gb|EED27982.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
parahaemolyticus 16]
Length = 106
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 63/98 (64%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D +KV+ P +Y V+L ND+YTPM+FVI +L+ FF D + A +ML+VH+
Sbjct: 8 VTPDSDLLELEKTKVKPPSMYNVVLNNDDYTPMDFVIEILERFFSMDADKATQVMLQVHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CG Y E+AE KV QV YS+++++PL C MEQ
Sbjct: 68 EGKAICGTYTAEVAETKVAQVTMYSKENEHPLLCTMEQ 105
>gi|84393767|ref|ZP_00992515.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio splendidus
12B01]
gi|84375629|gb|EAP92528.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio splendidus
12B01]
Length = 106
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/97 (48%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + +KV+ P +Y V+L ND+YTPM+FVI +L+ FF D E A +MLKVH++
Sbjct: 9 SPGSDLLEKEETKVKPPAMYNVVLNNDDYTPMDFVIEILERFFSLDIEQATEVMLKVHYE 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG Y+ EIAE KV QV YS+++++PL C MEQ
Sbjct: 69 GKAICGTYSAEIAETKVAQVKMYSKENEHPLLCTMEQ 105
>gi|119775192|ref|YP_927932.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
amazonensis SB2B]
gi|166214742|sp|A1S7A6|CLPS_SHEAM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|119767692|gb|ABM00263.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 102
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 63/92 (68%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
R +++ P +Y+V+L ND+YTPM+FV+ VLQ FF + A IML++HHQG C
Sbjct: 10 VVERADTELMPPSMYKVILNNDDYTPMDFVVEVLQLFFKMNEHQATEIMLQIHHQGKAVC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GV+ + IAE KV QV ++RQ+Q+PL C +E+
Sbjct: 70 GVFPFGIAETKVAQVNQFARQNQHPLLCSLEK 101
>gi|218548404|ref|YP_002382195.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
fergusonii ATCC 35469]
gi|226706568|sp|B7LN49|CLPS_ESCF3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|218355945|emb|CAQ88560.1| regulatory protein for ClpA substrate specificity [Escherichia
fergusonii ATCC 35469]
gi|324113823|gb|EGC07798.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
fergusonii B253]
gi|325496825|gb|EGC94684.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
fergusonii ECD227]
Length = 106
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/97 (48%), Positives = 66/97 (68%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLAEDKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V NY+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNNYARENEHPLLCTLEK 105
>gi|239994276|ref|ZP_04714800.1| ATP-dependent Clp protease adaptor protein ClpS [Alteromonas
macleodii ATCC 27126]
gi|238693285|sp|B4S1R5|CLPS_ALTMD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
Length = 106
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 50/103 (48%), Positives = 63/103 (61%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
K A + K + P +Y+VLL ND+YTPM+FVI VL FF D E A +M
Sbjct: 3 KDNAISIEKEKQKDAQRQKPQPPPMYKVLLNNDDYTPMDFVIEVLMQFFNMDAEKANQLM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L VH+QG CG++ EIAE KV QV Y+R+HQ+PL C MEQ
Sbjct: 63 LTVHYQGKAVCGIFTAEIAETKVMQVNQYARKHQHPLMCTMEQ 105
>gi|238784507|ref|ZP_04628515.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
bercovieri ATCC 43970]
gi|238795830|ref|ZP_04639343.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
mollaretii ATCC 43969]
gi|238714570|gb|EEQ06574.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
bercovieri ATCC 43970]
gi|238720293|gb|EEQ12096.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
mollaretii ATCC 43969]
Length = 106
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
K + + + ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GKNNDWLNFEHLVKDKQKEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 62 MLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105
>gi|260459200|ref|ZP_05807455.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
opportunistum WSM2075]
gi|259034754|gb|EEW36010.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
opportunistum WSM2075]
Length = 131
Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/131 (47%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Query: 9 MYHRVKRDGI-LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVND 67
M R ++D + + L + +A + E R +K + P LYRVL++ND
Sbjct: 1 MRIRKRQDYVTIGLTATTQVARMQNGGGDGNEAGRGTAVITRTKTKTKKPSLYRVLILND 60
Query: 68 NYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
+YTPMEFV+HVL+ FF KD E A IML VH+ G+GECGVY +E+AE KV+QVM+++RQ+
Sbjct: 61 DYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYTFEVAETKVSQVMDFARQN 120
Query: 128 QYPLQCIMEQK 138
Q+PLQC+ME+K
Sbjct: 121 QHPLQCVMEKK 131
>gi|183598326|ref|ZP_02959819.1| hypothetical protein PROSTU_01717 [Providencia stuartii ATCC 25827]
gi|188020501|gb|EDU58541.1| hypothetical protein PROSTU_01717 [Providencia stuartii ATCC 25827]
Length = 106
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 44/100 (44%), Positives = 64/100 (64%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
F + + ++ P +Y+V+L ND+YTPM+FV+ VLQ +F D E A IML V
Sbjct: 6 GTFKTDVVFKDEVEQVLQPPSMYKVILNNDDYTPMDFVVEVLQKYFSFDEERATQIMLDV 65
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H QG G CG++ E+AE K QV +Y+R+H+YPL C +E+
Sbjct: 66 HFQGKGVCGIFTAEVAETKAAQVNSYAREHEYPLLCTIEK 105
>gi|71908707|ref|YP_286294.1| ATP-dependent Clp protease adaptor protein ClpS [Dechloromonas
aromatica RCB]
gi|123626787|sp|Q47BF7|CLPS_DECAR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|71848328|gb|AAZ47824.1| ATP-dependent Clp protease adaptor protein ClpS [Dechloromonas
aromatica RCB]
Length = 102
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/95 (52%), Positives = 66/95 (69%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
S++ PK+Y+V+L+ND+YTPM+FVI VLQ FF D E A IMLKVH++G
Sbjct: 7 EGGQLEAQRSRLGPPKMYKVVLLNDDYTPMDFVITVLQRFFSLDTEQATRIMLKVHNEGR 66
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ +IA KV QV ++RQHQ+PL CIME+
Sbjct: 67 GVCGVFPRDIAATKVEQVSAFARQHQHPLACIMEE 101
>gi|323493245|ref|ZP_08098374.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
brasiliensis LMG 20546]
gi|323312511|gb|EGA65646.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
brasiliensis LMG 20546]
Length = 106
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 63/98 (64%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D +KV+ P +Y V+L ND+YTPM+FVI +L+ FF D + A +ML+VH+
Sbjct: 8 VTPDSDLLELEKTKVKPPSMYNVVLNNDDYTPMDFVIEILERFFSMDIDKATQVMLQVHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CG Y E+AE KV QV YS+++++PL C MEQ
Sbjct: 68 EGKAICGTYTAEVAETKVAQVTMYSKENEHPLLCTMEQ 105
>gi|254480629|ref|ZP_05093876.1| ATP-dependent Clp protease adaptor protein ClpS [marine gamma
proteobacterium HTCC2148]
gi|214039212|gb|EEB79872.1| ATP-dependent Clp protease adaptor protein ClpS [marine gamma
proteobacterium HTCC2148]
Length = 107
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 64/100 (64%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
E + + +++ P L++V+L+ND+YTPMEFV+ VL++FF + E A +ML
Sbjct: 4 EEEDVDGGLALQESKPELKKPPLFKVVLMNDDYTPMEFVVEVLESFFRMNREQATHVMLT 63
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
VH QG G CG++ +IAE K QV Y+R+ ++PL C +E
Sbjct: 64 VHTQGKGVCGIFTRDIAETKAAQVNQYARESEHPLLCEVE 103
>gi|33597157|ref|NP_884800.1| ATP-dependent Clp protease adaptor protein ClpS [Bordetella
parapertussis 12822]
gi|33601001|ref|NP_888561.1| ATP-dependent Clp protease adaptor protein ClpS [Bordetella
bronchiseptica RB50]
gi|39931037|sp|Q7W7E8|CLPS_BORPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|39931045|sp|Q7WKT7|CLPS_BORBR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|33566608|emb|CAE37866.1| hypothetical protein BPP2572 [Bordetella parapertussis]
gi|33575436|emb|CAE32514.1| hypothetical protein BB2017 [Bordetella bronchiseptica RB50]
Length = 104
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 41 DNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D D V + P +Y+V+L+ND+YTPMEFV+ VLQ FF K+ E A IML+VHH
Sbjct: 6 DTQHDVVVEKQPARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNSEDATRIMLQVHH 65
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CGVY ++A ++ QV Y+R Q+PLQCIME
Sbjct: 66 EGRAVCGVYPRDLAATRIAQVSQYARARQHPLQCIMEP 103
>gi|94499670|ref|ZP_01306207.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanobacter sp.
RED65]
gi|94428424|gb|EAT13397.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanobacter sp.
RED65]
Length = 116
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 63/102 (61%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
D + +++ P LY+V+++ND+YTPM+FVI VL FF D E A IML
Sbjct: 12 DKESEDEHGIAVAPSKPELKRPSLYQVIMLNDDYTPMDFVIDVLTRFFAMDMEKATQIML 71
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH QG CGVY +IAE K QVM Y+ +HQ+PL+C ++Q
Sbjct: 72 AVHTQGSAVCGVYTKDIAETKAAQVMAYAEEHQHPLKCNIQQ 113
>gi|15800639|ref|NP_286653.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 EDL933]
gi|15830221|ref|NP_308994.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. Sakai]
gi|16128849|ref|NP_415402.1| regulatory protein for ClpA substrate specificity [Escherichia coli
str. K-12 substr. MG1655]
gi|24112257|ref|NP_706767.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
2a str. 301]
gi|26246907|ref|NP_752947.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
CFT073]
gi|30062369|ref|NP_836540.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
2a str. 2457T]
gi|74311440|ref|YP_309859.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella sonnei
Ss046]
gi|82543368|ref|YP_407315.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
Sb227]
gi|82777596|ref|YP_403945.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
dysenteriae Sd197]
gi|89107732|ref|AP_001512.1| regulatory protein for ClpA substrate specificity [Escherichia coli
str. K-12 substr. W3110]
gi|91209918|ref|YP_539904.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
UTI89]
gi|110641082|ref|YP_668812.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
536]
gi|110804883|ref|YP_688403.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
5 str. 8401]
gi|117623059|ref|YP_851972.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
APEC O1]
gi|157156472|ref|YP_001462078.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
E24377A]
gi|157160404|ref|YP_001457722.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
HS]
gi|168752462|ref|ZP_02777484.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4113]
gi|168759050|ref|ZP_02784057.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4401]
gi|168769874|ref|ZP_02794881.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4486]
gi|168777871|ref|ZP_02802878.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4196]
gi|168783792|ref|ZP_02808799.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4076]
gi|168789133|ref|ZP_02814140.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC869]
gi|168802712|ref|ZP_02827719.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC508]
gi|170020716|ref|YP_001725670.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
ATCC 8739]
gi|170080540|ref|YP_001729860.1| regulatory protein for ClpA substrate specificity [Escherichia coli
str. K-12 substr. DH10B]
gi|170683903|ref|YP_001744326.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
SMS-3-5]
gi|187732054|ref|YP_001880921.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
CDC 3083-94]
gi|188493236|ref|ZP_03000506.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
53638]
gi|191167602|ref|ZP_03029413.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
B7A]
gi|191172151|ref|ZP_03033695.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
F11]
gi|193064650|ref|ZP_03045729.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
E22]
gi|194428349|ref|ZP_03060890.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
B171]
gi|194433088|ref|ZP_03065370.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
dysenteriae 1012]
gi|194438739|ref|ZP_03070826.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
101-1]
gi|195939544|ref|ZP_03084926.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4024]
gi|208807982|ref|ZP_03250319.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4206]
gi|208815975|ref|ZP_03257154.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4045]
gi|208822627|ref|ZP_03262946.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4042]
gi|209399503|ref|YP_002269555.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4115]
gi|209918130|ref|YP_002292214.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
SE11]
gi|217326428|ref|ZP_03442512.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. TW14588]
gi|218553467|ref|YP_002386380.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
IAI1]
gi|218557785|ref|YP_002390698.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
S88]
gi|218688663|ref|YP_002396875.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
ED1a]
gi|218694355|ref|YP_002402022.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
55989]
gi|218700603|ref|YP_002408232.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
IAI39]
gi|218704310|ref|YP_002411829.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
UMN026]
gi|227884153|ref|ZP_04001958.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
83972]
gi|238900140|ref|YP_002925936.1| regulatory protein for ClpA substrate specificity [Escherichia coli
BW2952]
gi|253774089|ref|YP_003036920.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160996|ref|YP_003044104.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli B
str. REL606]
gi|254792082|ref|YP_003076919.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. TW14359]
gi|256020998|ref|ZP_05434863.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella sp. D9]
gi|256023492|ref|ZP_05437357.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia sp.
4_1_40B]
gi|260843132|ref|YP_003220910.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
coli O103:H2 str. 12009]
gi|260854173|ref|YP_003228064.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
coli O26:H11 str. 11368]
gi|260867054|ref|YP_003233456.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
coli O111:H- str. 11128]
gi|261225537|ref|ZP_05939818.1| regulatory protein for ClpA substrate specificity [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258494|ref|ZP_05951027.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
coli O157:H7 str. FRIK966]
gi|291281885|ref|YP_003498703.1| ATP-dependent Clp protease adapter protein clpS [Escherichia coli
O55:H7 str. CB9615]
gi|293404189|ref|ZP_06648183.1| ClpS [Escherichia coli FVEC1412]
gi|293409260|ref|ZP_06652836.1| conserved hypothetical protein [Escherichia coli B354]
gi|293414164|ref|ZP_06656813.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
B185]
gi|293433179|ref|ZP_06661607.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
B088]
gi|297516224|ref|ZP_06934610.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
OP50]
gi|298379970|ref|ZP_06989575.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
FVEC1302]
gi|300817017|ref|ZP_07097236.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 107-1]
gi|300823619|ref|ZP_07103746.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 119-7]
gi|300895696|ref|ZP_07114292.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 198-1]
gi|300902417|ref|ZP_07120399.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 84-1]
gi|300921087|ref|ZP_07137471.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 115-1]
gi|300922550|ref|ZP_07138651.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 182-1]
gi|300928422|ref|ZP_07143955.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 187-1]
gi|300935725|ref|ZP_07150693.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 21-1]
gi|300950109|ref|ZP_07164055.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 116-1]
gi|300954436|ref|ZP_07166888.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 175-1]
gi|300978555|ref|ZP_07174308.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 45-1]
gi|300991762|ref|ZP_07179625.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 200-1]
gi|301020523|ref|ZP_07184607.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 69-1]
gi|301024394|ref|ZP_07188081.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 196-1]
gi|301051189|ref|ZP_07198019.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 185-1]
gi|301305345|ref|ZP_07211440.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 124-1]
gi|301328605|ref|ZP_07221666.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 78-1]
gi|301646325|ref|ZP_07246213.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 146-1]
gi|306812669|ref|ZP_07446862.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
NC101]
gi|307137509|ref|ZP_07496865.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H736]
gi|307311731|ref|ZP_07591371.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
W]
gi|309783999|ref|ZP_07678643.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
dysenteriae 1617]
gi|309795322|ref|ZP_07689740.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 145-7]
gi|312969050|ref|ZP_07783257.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
coli 2362-75]
gi|312971008|ref|ZP_07785187.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
coli 1827-70]
gi|331641402|ref|ZP_08342537.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H736]
gi|331646149|ref|ZP_08347252.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
M605]
gi|331651900|ref|ZP_08352919.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
M718]
gi|331656953|ref|ZP_08357915.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
TA206]
gi|331662295|ref|ZP_08363218.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
TA143]
gi|331667255|ref|ZP_08368120.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
TA271]
gi|331676669|ref|ZP_08377365.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H591]
gi|331682390|ref|ZP_08383009.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H299]
gi|67462206|sp|P0A8Q6|CLPS_ECOLI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67462207|sp|P0A8Q7|CLPS_ECOL6 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67462208|sp|P0A8Q8|CLPS_ECO57 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67462209|sp|P0A8Q9|CLPS_SHIFL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|122424438|sp|Q1RE41|CLPS_ECOUT RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123049335|sp|Q0TJG8|CLPS_ECOL5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123343208|sp|Q0T8P4|CLPS_SHIF8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123560128|sp|Q323M1|CLPS_SHIBS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123562126|sp|Q32E01|CLPS_SHIDS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123617606|sp|Q3Z3N8|CLPS_SHISS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|158512538|sp|A1A9B8|CLPS_ECOK1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|167008653|sp|A7ZJU9|CLPS_ECO24 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|167008654|sp|A7ZYI5|CLPS_ECOHS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|189082474|sp|B1IWP1|CLPS_ECOLC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|226706563|sp|B7MHI7|CLPS_ECO45 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|226706564|sp|B7NM96|CLPS_ECO7I RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|226706565|sp|B7M809|CLPS_ECO8A RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|226706566|sp|B7NAN2|CLPS_ECOLU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|226706567|sp|B1LKM9|CLPS_ECOSM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|229889820|sp|B1X822|CLPS_ECODH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238066650|sp|B5YSH7|CLPS_ECO5E RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238066651|sp|B6I8V2|CLPS_ECOSE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238691691|sp|B2TUJ7|CLPS_SHIB3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|254763816|sp|B7LD74|CLPS_ECO55 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|254763817|sp|B7MRT8|CLPS_ECO81 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|259491246|sp|C4ZY53|CLPS_ECOBW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|27573865|pdb|1MBU|C Chain C, Crystal Structure Analysis Of Clpsn Heterodimer
gi|27573866|pdb|1MBU|D Chain D, Crystal Structure Analysis Of Clpsn Heterodimer
gi|27573868|pdb|1MBV|B Chain B, Crystal Structure Analysis Of Clpsn Heterodimer Tetragonal
Form
gi|27573871|pdb|1MBX|C Chain C, Crystal Structure Analysis Of Clpsn With Transition Metal
Ion Bound
gi|27573872|pdb|1MBX|D Chain D, Crystal Structure Analysis Of Clpsn With Transition Metal
Ion Bound
gi|61679804|pdb|1R6O|C Chain C, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
Dependent Clp Protease Adaptor Protein Clps
gi|61679805|pdb|1R6O|D Chain D, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
Dependent Clp Protease Adaptor Protein Clps
gi|61679808|pdb|1R6Q|C Chain C, Clpns With Fragments
gi|61679809|pdb|1R6Q|D Chain D, Clpns With Fragments
gi|12513911|gb|AAG55263.1|AE005269_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26107307|gb|AAN79490.1|AE016758_94 Protein yljA [Escherichia coli CFT073]
gi|1787108|gb|AAC73968.1| regulatory protein for ClpA substrate specificity [Escherichia coli
str. K-12 substr. MG1655]
gi|4062464|dbj|BAA35600.1| regulatory protein for ClpA substrate specificity [Escherichia coli
str. K12 substr. W3110]
gi|13360426|dbj|BAB34390.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|24051108|gb|AAN42474.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30040614|gb|AAP16346.1| hypothetical protein S0881 [Shigella flexneri 2a str. 2457T]
gi|73854917|gb|AAZ87624.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81241744|gb|ABB62454.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81244779|gb|ABB65487.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|91071492|gb|ABE06373.1| ATP-dependent Clp protease adaptor protein [Escherichia coli UTI89]
gi|110342674|gb|ABG68911.1| hypothetical protein YljA [Escherichia coli 536]
gi|110614431|gb|ABF03098.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|115512183|gb|ABJ00258.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|157066084|gb|ABV05339.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
HS]
gi|157078502|gb|ABV18210.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
E24377A]
gi|169755644|gb|ACA78343.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
ATCC 8739]
gi|169888375|gb|ACB02082.1| regulatory protein for ClpA substrate specificity [Escherichia coli
str. K-12 substr. DH10B]
gi|170521621|gb|ACB19799.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
SMS-3-5]
gi|187429046|gb|ACD08320.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
CDC 3083-94]
gi|187766992|gb|EDU30836.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4196]
gi|188013696|gb|EDU51818.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4113]
gi|188488435|gb|EDU63538.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
53638]
gi|188998902|gb|EDU67888.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4076]
gi|189354287|gb|EDU72706.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4401]
gi|189361171|gb|EDU79590.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4486]
gi|189371156|gb|EDU89572.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC869]
gi|189375364|gb|EDU93780.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC508]
gi|190902363|gb|EDV62101.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
B7A]
gi|190907678|gb|EDV67273.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
F11]
gi|192927707|gb|EDV82322.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
E22]
gi|194413564|gb|EDX29845.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
B171]
gi|194418585|gb|EDX34672.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
dysenteriae 1012]
gi|194422371|gb|EDX38371.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
101-1]
gi|208727783|gb|EDZ77384.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4206]
gi|208732623|gb|EDZ81311.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4045]
gi|208738112|gb|EDZ85795.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4042]
gi|209160903|gb|ACI38336.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC4115]
gi|209775128|gb|ACI85876.1| hypothetical protein ECs0967 [Escherichia coli]
gi|209775130|gb|ACI85877.1| hypothetical protein ECs0967 [Escherichia coli]
gi|209775132|gb|ACI85878.1| hypothetical protein ECs0967 [Escherichia coli]
gi|209775134|gb|ACI85879.1| hypothetical protein ECs0967 [Escherichia coli]
gi|209775136|gb|ACI85880.1| hypothetical protein ECs0967 [Escherichia coli]
gi|209911389|dbj|BAG76463.1| conserved hypothetical protein [Escherichia coli SE11]
gi|217322649|gb|EEC31073.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. TW14588]
gi|218351087|emb|CAU96791.1| regulatory protein for ClpA substrate specificity [Escherichia coli
55989]
gi|218360235|emb|CAQ97785.1| regulatory protein for ClpA substrate specificity [Escherichia coli
IAI1]
gi|218364554|emb|CAR02238.1| regulatory protein for ClpA substrate specificity [Escherichia coli
S88]
gi|218370589|emb|CAR18396.1| regulatory protein for ClpA substrate specificity [Escherichia coli
IAI39]
gi|218426227|emb|CAR07052.1| regulatory protein for ClpA substrate specificity [Escherichia coli
ED1a]
gi|218431407|emb|CAR12285.1| regulatory protein for ClpA substrate specificity [Escherichia coli
UMN026]
gi|222032610|emb|CAP75349.1| ATP-dependent Clp protease adaptor protein clpS [Escherichia coli
LF82]
gi|227838905|gb|EEJ49371.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
83972]
gi|238863441|gb|ACR65439.1| regulatory protein for ClpA substrate specificity [Escherichia coli
BW2952]
gi|242376696|emb|CAQ31409.1| specificity factor for ClpA-ClpP chaperone-protease complex
[Escherichia coli BL21(DE3)]
gi|253325133|gb|ACT29735.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972897|gb|ACT38568.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli B
str. REL606]
gi|253977111|gb|ACT42781.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
BL21(DE3)]
gi|254591482|gb|ACT70843.1| regulatory protein for ClpA substrate specificity [Escherichia coli
O157:H7 str. TW14359]
gi|257752822|dbj|BAI24324.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
coli O26:H11 str. 11368]
gi|257758279|dbj|BAI29776.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
coli O103:H2 str. 12009]
gi|257763410|dbj|BAI34905.1| regulatory protein ClpS for ClpA substrate specificity [Escherichia
coli O111:H- str. 11128]
gi|260449972|gb|ACX40394.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
DH1]
gi|281600210|gb|ADA73194.1| ATP-dependent Clp protease adapter protein clpS [Shigella flexneri
2002017]
gi|284920735|emb|CBG33798.1| ATP-dependent Clp protease adaptor protein [Escherichia coli 042]
gi|290761758|gb|ADD55719.1| ATP-dependent Clp protease adapter protein clpS [Escherichia coli
O55:H7 str. CB9615]
gi|291323998|gb|EFE63420.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
B088]
gi|291428775|gb|EFF01800.1| ClpS [Escherichia coli FVEC1412]
gi|291434222|gb|EFF07195.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
B185]
gi|291469728|gb|EFF12212.1| conserved hypothetical protein [Escherichia coli B354]
gi|294493941|gb|ADE92697.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
IHE3034]
gi|298279668|gb|EFI21176.1| ATP-dependent Clp protease adapter protein ClpS [Escherichia coli
FVEC1302]
gi|299880401|gb|EFI88612.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 196-1]
gi|300297210|gb|EFJ53595.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 185-1]
gi|300305516|gb|EFJ60036.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 200-1]
gi|300318586|gb|EFJ68370.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 175-1]
gi|300360365|gb|EFJ76235.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 198-1]
gi|300398656|gb|EFJ82194.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 69-1]
gi|300405449|gb|EFJ88987.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 84-1]
gi|300409634|gb|EFJ93172.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 45-1]
gi|300411938|gb|EFJ95248.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 115-1]
gi|300421096|gb|EFK04407.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 182-1]
gi|300450524|gb|EFK14144.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 116-1]
gi|300459088|gb|EFK22581.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 21-1]
gi|300463585|gb|EFK27078.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 187-1]
gi|300523819|gb|EFK44888.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 119-7]
gi|300530369|gb|EFK51431.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 107-1]
gi|300839363|gb|EFK67123.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 124-1]
gi|300844997|gb|EFK72757.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 78-1]
gi|301075428|gb|EFK90234.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 146-1]
gi|305853432|gb|EFM53871.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
NC101]
gi|306908286|gb|EFN38785.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
W]
gi|307552724|gb|ADN45499.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
ABU 83972]
gi|307627693|gb|ADN71997.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
UM146]
gi|308120972|gb|EFO58234.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 145-7]
gi|308928142|gb|EFP73605.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
dysenteriae 1617]
gi|309701158|emb|CBJ00458.1| ATP-dependent Clp protease adaptor protein [Escherichia coli ETEC
H10407]
gi|310336769|gb|EFQ01936.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
coli 1827-70]
gi|312286452|gb|EFR14365.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
coli 2362-75]
gi|312945399|gb|ADR26226.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O83:H1 str. NRG 857C]
gi|313650206|gb|EFS14618.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
flexneri 2a str. 2457T]
gi|315060167|gb|ADT74494.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
W]
gi|315135530|dbj|BAJ42689.1| ATP-dependent Clp protease adapter protein clpS [Escherichia coli
DH1]
gi|315257919|gb|EFU37887.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 85-1]
gi|315287285|gb|EFU46696.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 110-3]
gi|315291075|gb|EFU50438.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 153-1]
gi|315296657|gb|EFU55952.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 16-3]
gi|315619193|gb|EFU99772.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
coli 3431]
gi|320175322|gb|EFW50428.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella
dysenteriae CDC 74-1112]
gi|320180599|gb|EFW55528.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella boydii
ATCC 9905]
gi|320183180|gb|EFW58038.1| ATP-dependent Clp protease adaptor protein ClpS [Shigella flexneri
CDC 796-83]
gi|320192633|gb|EFW67274.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. EC1212]
gi|320196624|gb|EFW71247.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
WV_060327]
gi|320202276|gb|EFW76847.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
EC4100B]
gi|320637752|gb|EFX07544.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. G5101]
gi|320642875|gb|EFX12076.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H- str. 493-89]
gi|320648332|gb|EFX16987.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H- str. H 2687]
gi|320654170|gb|EFX22238.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320659794|gb|EFX27350.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O55:H7 str. USDA 5905]
gi|320664264|gb|EFX31415.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. LSU-61]
gi|323155745|gb|EFZ41914.1| ATP-dependent Clp protease adaptor ClpS family protein [Escherichia
coli EPECa14]
gi|323159506|gb|EFZ45486.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Escherichia coli E128010]
gi|323165818|gb|EFZ51604.1| ATP-dependent Clp protease adaptor ClpS family protein [Shigella
sonnei 53G]
gi|323172148|gb|EFZ57786.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Escherichia coli LT-68]
gi|323175497|gb|EFZ61092.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Escherichia coli 1180]
gi|323185154|gb|EFZ70519.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Escherichia coli 1357]
gi|323379276|gb|ADX51544.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
KO11]
gi|323937988|gb|EGB34250.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
E1520]
gi|323942798|gb|EGB38963.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
E482]
gi|323947161|gb|EGB43171.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H120]
gi|323953415|gb|EGB49281.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H252]
gi|323958183|gb|EGB53892.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H263]
gi|323962994|gb|EGB58566.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H489]
gi|323967317|gb|EGB62740.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
M863]
gi|323969619|gb|EGB64906.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
TA007]
gi|323976732|gb|EGB71820.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
TW10509]
gi|324009833|gb|EGB79052.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 57-2]
gi|324013007|gb|EGB82226.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 60-1]
gi|324019029|gb|EGB88248.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
MS 117-3]
gi|324116095|gb|EGC10019.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
E1167]
gi|326338224|gb|EGD62053.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. 1125]
gi|326346201|gb|EGD69939.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O157:H7 str. 1044]
gi|327253669|gb|EGE65298.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Escherichia coli STEC_7v]
gi|330910663|gb|EGH39173.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
AA86]
gi|331038200|gb|EGI10420.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H736]
gi|331044901|gb|EGI17028.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
M605]
gi|331050178|gb|EGI22236.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
M718]
gi|331055201|gb|EGI27210.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
TA206]
gi|331060717|gb|EGI32681.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
TA143]
gi|331065611|gb|EGI37504.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
TA271]
gi|331075358|gb|EGI46656.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H591]
gi|331080021|gb|EGI51200.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
H299]
gi|332091077|gb|EGI96167.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Shigella dysenteriae 155-74]
gi|332097186|gb|EGJ02169.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Shigella boydii 3594-74]
gi|332104576|gb|EGJ07922.1| regulatory protein for ClpA substrate specificity [Shigella sp. D9]
Length = 106
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|170769198|ref|ZP_02903651.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
albertii TW07627]
gi|170121850|gb|EDS90781.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia
albertii TW07627]
Length = 106
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 47/97 (48%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E R ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFEQLAEERVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|33593716|ref|NP_881360.1| ATP-dependent Clp protease adaptor protein ClpS [Bordetella
pertussis Tohama I]
gi|39931026|sp|Q7VVC1|CLPS_BORPE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|33563789|emb|CAE43031.1| hypothetical protein BP2756 [Bordetella pertussis Tohama I]
Length = 104
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 41 DNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D D V + P +Y+V+L+ND+YTPMEFV+ VLQ FF K+ E A IML+VHH
Sbjct: 6 DTQHDVVVEKQPARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNSEDATRIMLQVHH 65
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CGVY ++A ++ QV Y+R Q+PLQCIME
Sbjct: 66 EGRAVCGVYPRDLAATRIAQVSQYARARQHPLQCIMEP 103
>gi|323496571|ref|ZP_08101624.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sinaloensis
DSM 21326]
gi|323318317|gb|EGA71275.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sinaloensis
DSM 21326]
Length = 106
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 63/98 (64%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D +K++ P +Y V+L ND+YTPM+FVI +L+ FF D + A +MLKVH+
Sbjct: 8 VTPDSDLLELEKTKIKPPSMYNVVLNNDDYTPMDFVIEILERFFSMDEDKATQVMLKVHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CG + E+AE KV QV YS+++++PL C MEQ
Sbjct: 68 EGKAICGTFTAEVAETKVAQVTMYSKENEHPLLCTMEQ 105
>gi|149376383|ref|ZP_01894146.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter
algicola DG893]
gi|149359397|gb|EDM47858.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter
algicola DG893]
Length = 119
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ + + ++ P +RVLL+ND+YTPM+FV+ VL FF + E A +
Sbjct: 15 EDDQPGHQDDVSVAPE-KPALKRPARFRVLLLNDDYTPMDFVVDVLMKFFGMNEEKATQV 73
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH QG CGVY +IAE K QV YS + ++PL C +E+
Sbjct: 74 MLLVHTQGKAVCGVYTRDIAETKAAQVNQYSSECEHPLLCEIER 117
>gi|161503926|ref|YP_001571038.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:-- str.
RSK2980]
gi|189082476|sp|A9MI06|CLPS_SALAR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|160865273|gb|ABX21896.1| hypothetical protein SARI_02017 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 106
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 63/97 (64%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D E ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLVEDDLRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVEMVNQYARENEHPLLCTLEK 105
>gi|323190703|gb|EFZ75972.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Escherichia coli RN587/1]
Length = 106
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVTMVNKYARENEHPLLCTLEK 105
>gi|281178016|dbj|BAI54346.1| conserved hypothetical protein [Escherichia coli SE15]
Length = 106
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPM+FVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLAEEKVRDALKPPSMYKVILVNDDYTPMDFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|291616886|ref|YP_003519628.1| ClpS [Pantoea ananatis LMG 20103]
gi|291151916|gb|ADD76500.1| ClpS [Pantoea ananatis LMG 20103]
gi|327393314|dbj|BAK10736.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea ananatis
AJ13355]
Length = 106
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 60/89 (67%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +MLKVH+ G CGV+
Sbjct: 17 KVREGLKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLKVHYHGKAICGVF 76
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E+AE K QV NY+R + +PL C +E+
Sbjct: 77 TAEVAETKAAQVNNYARDNHHPLLCTLEK 105
>gi|91793189|ref|YP_562840.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
denitrificans OS217]
gi|122968755|sp|Q12N59|CLPS_SHEDO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|91715191|gb|ABE55117.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
denitrificans OS217]
Length = 102
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
++ R S++ P +Y+V+L ND+YTPM+FVI VL FF K A IML +HHQG G C
Sbjct: 10 TKQRIESELMPPSMYKVILNNDDYTPMDFVIEVLARFFDKHEPQATDIMLTIHHQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GVY + IAE KV QV ++R++Q+PL C +E+
Sbjct: 70 GVYPFGIAETKVLQVNQFARENQHPLLCTLEK 101
>gi|15805613|ref|NP_294309.1| ATP-dependent Clp protease adaptor protein ClpS [Deinococcus
radiodurans R1]
gi|6458284|gb|AAF10166.1|AE001917_3 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 139
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 5/126 (3%)
Query: 13 VKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPM 72
G ++ + G ++ ++ + P+L+RVLL+ND+YTPM
Sbjct: 15 PLGGGARPILGAMTRPTIPPGPPG-----AEGRTQTLERTETKKPRLWRVLLLNDDYTPM 69
Query: 73 EFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132
++V+ VL+ FF K + A+ IML VHH+G G GVY ++AE KV QV ++++ +PL+
Sbjct: 70 DYVVQVLEQFFRKTEQEAELIMLAVHHKGQGVAGVYTRDVAETKVAQVTAHAQREGHPLR 129
Query: 133 CIMEQK 138
+ E +
Sbjct: 130 VVAEPE 135
>gi|163856974|ref|YP_001631272.1| ATP-dependent Clp protease adaptor protein ClpS [Bordetella petrii
DSM 12804]
gi|229889825|sp|A9IQ03|CLPS_BORPD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|163260702|emb|CAP43004.1| hypothetical protein Bpet2662 [Bordetella petrii]
Length = 104
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 41 DNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D D V + + P +Y+V+L+ND+YTPMEFV+ VLQ FF K+ E A IML+VHH
Sbjct: 6 DTQHDVAVEKAPARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNQEDATRIMLQVHH 65
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G G CGVY ++A ++ QV Y+R Q+PLQC+ME
Sbjct: 66 EGRGTCGVYPRDVAATRIAQVAQYARARQHPLQCVMEP 103
>gi|193071768|ref|ZP_03052664.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
E110019]
gi|192954925|gb|EDV85432.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
E110019]
Length = 106
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
+FD + +VR + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A
Sbjct: 3 KTNDWLDFDQVAEEKVRDA--LKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQ 60
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH+QG CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 61 LMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|325526418|gb|EGD04006.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
TJI49]
Length = 104
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 67/95 (70%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD ETA IMLKVH +G
Sbjct: 9 DSTVLERKEQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLKVHREGR 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 69 GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|269139553|ref|YP_003296254.1| ATP-dependent Clp protease adaptor protein [Edwardsiella tarda
EIB202]
gi|267985214|gb|ACY85043.1| ATP-dependent Clp protease adaptor protein [Edwardsiella tarda
EIB202]
gi|304559441|gb|ADM42105.1| ATP-dependent Clp protease adaptor protein ClpS [Edwardsiella tarda
FL6-60]
Length = 106
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/92 (48%), Positives = 60/92 (65%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E R V+ P LY V+L ND+YTPMEFVI VLQ FF D E A +ML VH++G C
Sbjct: 14 VEDRTRRAVKPPSLYSVILNNDDYTPMEFVIEVLQKFFAYDIERATQLMLTVHYKGKAVC 73
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GV+ E+AE KV + Y+R +++PL C +E+
Sbjct: 74 GVFTAEVAETKVALINRYARDNEHPLLCTLEK 105
>gi|78067320|ref|YP_370089.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
383]
gi|107023457|ref|YP_621784.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
cenocepacia AU 1054]
gi|115352618|ref|YP_774457.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
ambifaria AMMD]
gi|116690539|ref|YP_836162.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
cenocepacia HI2424]
gi|134296692|ref|YP_001120427.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
vietnamiensis G4]
gi|161523956|ref|YP_001578968.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
multivorans ATCC 17616]
gi|167585699|ref|ZP_02378087.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
ubonensis Bu]
gi|170697705|ref|ZP_02888793.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
ambifaria IOP40-10]
gi|170733880|ref|YP_001765827.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
cenocepacia MC0-3]
gi|171319748|ref|ZP_02908836.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
ambifaria MEX-5]
gi|172061479|ref|YP_001809131.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
ambifaria MC40-6]
gi|189351283|ref|YP_001946911.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
multivorans ATCC 17616]
gi|206561069|ref|YP_002231834.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
cenocepacia J2315]
gi|221199250|ref|ZP_03572294.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
multivorans CGD2M]
gi|221205848|ref|ZP_03578863.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
multivorans CGD2]
gi|221211472|ref|ZP_03584451.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
multivorans CGD1]
gi|254247420|ref|ZP_04940741.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
cenocepacia PC184]
gi|254251618|ref|ZP_04944936.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
dolosa AUO158]
gi|122322413|sp|Q0BCK0|CLPS_BURCM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123371357|sp|Q1BU94|CLPS_BURCA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123567808|sp|Q39DM1|CLPS_BURS3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214725|sp|A0K9U2|CLPS_BURCH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214730|sp|A4JH39|CLPS_BURVG RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238687030|sp|A9AGM9|CLPS_BURM1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238688602|sp|B1JXD0|CLPS_BURCC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238692854|sp|B1YVB1|CLPS_BURA4 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238693085|sp|B4E904|CLPS_BURCJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|77968065|gb|ABB09445.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
383]
gi|105893646|gb|ABF76811.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
cenocepacia AU 1054]
gi|115282606|gb|ABI88123.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
ambifaria AMMD]
gi|116648628|gb|ABK09269.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
cenocepacia HI2424]
gi|124872196|gb|EAY63912.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
cenocepacia PC184]
gi|124894227|gb|EAY68107.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
dolosa AUO158]
gi|134139849|gb|ABO55592.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
vietnamiensis G4]
gi|160341385|gb|ABX14471.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
multivorans ATCC 17616]
gi|169817122|gb|ACA91705.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
cenocepacia MC0-3]
gi|170137453|gb|EDT05693.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
ambifaria IOP40-10]
gi|171095020|gb|EDT40043.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
ambifaria MEX-5]
gi|171993996|gb|ACB64915.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
ambifaria MC40-6]
gi|189335305|dbj|BAG44375.1| ATP-dependent Clp protease adaptor protein [Burkholderia
multivorans ATCC 17616]
gi|198037111|emb|CAR53032.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
cenocepacia J2315]
gi|221168833|gb|EEE01301.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
multivorans CGD1]
gi|221174686|gb|EEE07118.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
multivorans CGD2]
gi|221180535|gb|EEE12938.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
multivorans CGD2M]
Length = 104
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 67/95 (70%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD ETA IMLKVH +G
Sbjct: 9 DSTVLERKQQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKDRETATQIMLKVHREGR 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 69 GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|215486012|ref|YP_002328443.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
O127:H6 str. E2348/69]
gi|254763815|sp|B7UMX3|CLPS_ECO27 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|215264084|emb|CAS08426.1| regulatory protein for ClpA substrate specificity [Escherichia coli
O127:H6 str. E2348/69]
Length = 106
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFEQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|187925140|ref|YP_001896782.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
phytofirmans PsJN]
gi|238689617|sp|B2T6J4|CLPS_BURPP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|187716334|gb|ACD17558.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
phytofirmans PsJN]
Length = 104
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 67/95 (70%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD ETA +MLKVH +G
Sbjct: 9 DGTVLERQEKKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFNKDRETATQVMLKVHREGR 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 69 GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|283784648|ref|YP_003364513.1| ATP-dependent Clp protease adaptor protein [Citrobacter rodentium
ICC168]
gi|282948102|emb|CBG87667.1| ATP-dependent Clp protease adaptor protein [Citrobacter rodentium
ICC168]
Length = 106
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/89 (48%), Positives = 62/89 (69%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+QG CG++
Sbjct: 17 KVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGIF 76
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E+AE KV V Y+R++++PL C +E+
Sbjct: 77 TAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|307130779|ref|YP_003882795.1| regulatory protein for ClpA substrate specificity [Dickeya dadantii
3937]
gi|306528308|gb|ADM98238.1| regulatory protein for ClpA substrate specificity [Dickeya dadantii
3937]
Length = 106
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 64/99 (64%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
++ + ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +ML VH
Sbjct: 7 GTQTDDLTKEHNAEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVH 66
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ G CGVY+ E+AE KV QV Y+R++++PL C +E+
Sbjct: 67 YHGKAICGVYSAEVAETKVAQVNRYARENEHPLLCTLEK 105
>gi|157146439|ref|YP_001453758.1| ATP-dependent Clp protease adaptor protein ClpS [Citrobacter koseri
ATCC BAA-895]
gi|166214733|sp|A8AIK9|CLPS_CITK8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|157083644|gb|ABV13322.1| hypothetical protein CKO_02199 [Citrobacter koseri ATCC BAA-895]
Length = 106
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLAEDKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|54293794|ref|YP_126209.1| hypothetical protein lpl0850 [Legionella pneumophila str. Lens]
gi|148360536|ref|YP_001251743.1| ATP-dependent Clp protease adaptor protein [Legionella pneumophila
str. Corby]
gi|296106398|ref|YP_003618098.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
pneumophila 2300/99 Alcoy]
gi|67460217|sp|Q5WY89|CLPS_LEGPL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214737|sp|A5IG97|CLPS_LEGPC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|53753626|emb|CAH15084.1| hypothetical protein lpl0850 [Legionella pneumophila str. Lens]
gi|148282309|gb|ABQ56397.1| ATP-dependent Clp protease adaptor protein [Legionella pneumophila
str. Corby]
gi|295648299|gb|ADG24146.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
pneumophila 2300/99 Alcoy]
gi|307609611|emb|CBW99113.1| hypothetical protein LPW_08981 [Legionella pneumophila 130b]
Length = 111
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 65/96 (67%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ S+ ++ P+ Y+VLL+ND+YTPM+FV+ VL++FF+ + E A +ML+VH QG
Sbjct: 16 DTELSTEISTAIKRPRKYKVLLLNDDYTPMDFVVEVLKHFFHLNEEVAIQVMLQVHFQGK 75
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G CGV+ +IAE KV V Y+R +Q+PL ME +
Sbjct: 76 GVCGVFTRDIAETKVALVNEYARMNQHPLLSSMEPE 111
>gi|260550322|ref|ZP_05824534.1| substrate modulator for ClpAP [Acinetobacter sp. RUH2624]
gi|260406634|gb|EEX00115.1| substrate modulator for ClpAP [Acinetobacter sp. RUH2624]
Length = 137
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
D+ + V+ + +++ P LY V+L+ND+YTPM+FVI +LQ +F + +
Sbjct: 28 NPRLSDSQNEDHDGEIVVQTAPPELKRPPLYAVVLLNDDYTPMDFVIEILQQYFAMNLDQ 87
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A +ML VH++G G GVY +IAE K N V NY+R +PL C ++ K
Sbjct: 88 ATQVMLTVHYEGKGTAGVYPRDIAETKANLVNNYARSQGHPLLCQIKPK 136
>gi|126174686|ref|YP_001050835.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS155]
gi|153000985|ref|YP_001366666.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS185]
gi|160875698|ref|YP_001555014.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS195]
gi|217973055|ref|YP_002357806.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS223]
gi|304409063|ref|ZP_07390684.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS183]
gi|307303066|ref|ZP_07582821.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
BA175]
gi|166214743|sp|A3D5F3|CLPS_SHEB5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214744|sp|A6WP64|CLPS_SHEB8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|189082478|sp|A9L4G4|CLPS_SHEB9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|254763824|sp|B8E950|CLPS_SHEB2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|125997891|gb|ABN61966.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS155]
gi|151365603|gb|ABS08603.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS185]
gi|160861220|gb|ABX49754.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS195]
gi|217498190|gb|ACK46383.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS223]
gi|304352884|gb|EFM17281.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS183]
gi|306913426|gb|EFN43848.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
BA175]
gi|315267887|gb|ADT94740.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella baltica
OS678]
Length = 102
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 66/92 (71%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E R S++ P +Y+V+L ND+YTPM+FVI VLQ FF K+ + A IML +HHQG G C
Sbjct: 10 VEERVESELMPPSMYKVVLNNDDYTPMDFVIEVLQVFFRKNEQEATDIMLTIHHQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G++ + IAE KV QV ++RQ+Q+PL C +E+
Sbjct: 70 GIFPFGIAETKVIQVNQFARQNQHPLLCSLEK 101
>gi|167835724|ref|ZP_02462607.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
thailandensis MSMB43]
Length = 104
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 67/95 (70%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R K++ P +Y+V+L+ND++TPMEFV+ ++Q +F KD ETA IMLKVH +G
Sbjct: 9 DSTVLERKEQKLKPPSMYKVVLLNDDFTPMEFVVMIVQEYFRKDRETATQIMLKVHREGR 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 69 GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|307545652|ref|YP_003898131.1| ATP-dependent Clp protease adaptor protein ClpS [Halomonas elongata
DSM 2581]
gi|307217676|emb|CBV42946.1| ATP-dependent Clp protease adaptor protein ClpS [Halomonas elongata
DSM 2581]
Length = 121
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 20 ALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL 79
L + + D + S ++ P +Y+V+L ND++TPMEFV+ VL
Sbjct: 4 RLAPYRAGMTRPPEPDEEGDGDVAVQSS---EPELAHPPMYKVVLHNDDFTPMEFVVEVL 60
Query: 80 QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
Q FF+ D ETA IML VH QG CG++ +IAE K +QV Y+R+ Q+PL C +E
Sbjct: 61 QTFFHMDSETAVQIMLAVHTQGKATCGIFTRDIAETKSHQVNQYARECQHPLLCDIE 117
>gi|238753481|ref|ZP_04614844.1| ATP-dependent Clp protease adapter protein clpS [Yersinia ruckeri
ATCC 29473]
gi|238708434|gb|EEQ00789.1| ATP-dependent Clp protease adapter protein clpS [Yersinia ruckeri
ATCC 29473]
Length = 106
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 63/104 (60%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ + + ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GNNNDWLNFEHLVKDKQIDALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH++G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 62 MLNVHYKGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105
>gi|52841053|ref|YP_094852.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|54296838|ref|YP_123207.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
pneumophila str. Paris]
gi|67460221|sp|Q5X6T6|CLPS_LEGPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67460231|sp|Q5ZXB5|CLPS_LEGPH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|52628164|gb|AAU26905.1| hypothetical protein lpg0817 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53750623|emb|CAH12030.1| hypothetical protein lpp0879 [Legionella pneumophila str. Paris]
Length = 111
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 65/96 (67%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ S+ ++ P+ Y+VLL+ND+YTPM+FV+ VL++FF+ + E A +ML+VH QG
Sbjct: 16 DTELSTEISTAIKRPRKYKVLLLNDDYTPMDFVVEVLKHFFHLNEEVAIQVMLQVHFQGK 75
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G CGV+ +IAE KV V Y+R +Q+PL ME +
Sbjct: 76 GVCGVFTRDIAETKVALVNEYARMNQHPLLSSMEPE 111
>gi|330818077|ref|YP_004361782.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
gladioli BSR3]
gi|327370470|gb|AEA61826.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
gladioli BSR3]
Length = 104
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/111 (45%), Positives = 70/111 (63%), Gaps = 8/111 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
MA + R K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD
Sbjct: 1 MAIIPDKQDN--------TVLERSEQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKD 52
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ETA IMLKVH +G G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 53 RETATQIMLKVHREGRGVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|152983115|ref|YP_001354205.1| ATP-dependent Clp protease adaptor protein ClpS [Janthinobacterium
sp. Marseille]
gi|254763819|sp|A6T108|CLPS_JANMA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|151283192|gb|ABR91602.1| ATP-dependent Clp protease adaptor protein ClpS [Janthinobacterium
sp. Marseille]
Length = 102
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/101 (48%), Positives = 69/101 (68%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+A + +R K++ P +Y+VLL+ND+YTPMEFV+ +LQ +F KD ETA IML
Sbjct: 1 MAIKHDDGTVLMRQEQKLKPPSMYQVLLLNDDYTPMEFVVLILQEYFSKDRETATQIMLM 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH G G CGVY +IA KV V+N++R+ +PLQC+ME+
Sbjct: 61 VHRDGKGICGVYPKDIASTKVELVLNHARKAGHPLQCVMEE 101
>gi|294140597|ref|YP_003556575.1| ATP-dependent Clp protease adaptor protein clpS [Shewanella
violacea DSS12]
gi|293327066|dbj|BAJ01797.1| ATP-dependent Clp protease adaptor protein clpS [Shewanella
violacea DSS12]
Length = 102
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 45/92 (48%), Positives = 66/92 (71%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E R S++ P +Y+V+L ND+YTPM+FVI +LQ FF K+ + A IML +HHQG G C
Sbjct: 10 VEERVESELMPPSMYKVVLNNDDYTPMDFVIEILQFFFKKNEQEATDIMLAIHHQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G++ + IAE KV QV ++RQ+++PL C +E+
Sbjct: 70 GIFPFGIAETKVAQVNQFARQNEHPLLCSLEK 101
>gi|90413212|ref|ZP_01221207.1| ATP-dependent Clp protease adaptor protein ClpS [Photobacterium
profundum 3TCK]
gi|90325764|gb|EAS42222.1| ATP-dependent Clp protease adaptor protein ClpS [Photobacterium
profundum 3TCK]
Length = 106
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 65/96 (67%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D + ++V+ P +Y+V+L ND+YTPM+FVI VLQ FF D E A +ML VH++G
Sbjct: 10 PESDVLDKEEAQVKPPAMYKVVLNNDDYTPMDFVIEVLQKFFSMDMEKATQLMLNVHYEG 69
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
CG + E+AE KV QVM ++R++++PL C ME+
Sbjct: 70 KAICGTFTAEVAETKVAQVMMHARENEHPLLCTMEK 105
>gi|209517459|ref|ZP_03266300.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
H160]
gi|295677449|ref|YP_003605973.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
CCGE1002]
gi|209502113|gb|EEA02128.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
H160]
gi|295437292|gb|ADG16462.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
CCGE1002]
Length = 104
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R K++ P +Y+V+L+ND++TPMEFV+ ++Q +F KD ETA +MLKVH +G
Sbjct: 9 DGTVLERQEQKLKPPSMYKVVLLNDDFTPMEFVVMIVQEYFNKDRETATQVMLKVHREGR 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 69 GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|50121581|ref|YP_050748.1| ATP-dependent Clp protease adaptor protein ClpS [Pectobacterium
atrosepticum SCRI1043]
gi|67460269|sp|Q6D3T7|CLPS_ERWCT RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|49612107|emb|CAG75557.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 106
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ + + K++ P +Y V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GNNRTWSQSESLTADQQKEKLQPPSMYNVVLNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGV++ E+AE KV QV Y+R+++ PL C +E+
Sbjct: 62 MLTVHYQGKAICGVFSAEVAETKVVQVNRYARENEQPLLCTLEK 105
>gi|237707137|ref|ZP_04537618.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia sp.
3_2_53FAA]
gi|226898347|gb|EEH84606.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia sp.
3_2_53FAA]
Length = 106
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|16759817|ref|NP_455434.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|16764306|ref|NP_459921.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|29142410|ref|NP_805752.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|56414003|ref|YP_151078.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62179469|ref|YP_215886.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161614825|ref|YP_001588790.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167550381|ref|ZP_02344138.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167992164|ref|ZP_02573262.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168230818|ref|ZP_02655876.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168236855|ref|ZP_02661913.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168240792|ref|ZP_02665724.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168263570|ref|ZP_02685543.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168466528|ref|ZP_02700390.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168819925|ref|ZP_02831925.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194444791|ref|YP_002040145.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194450386|ref|YP_002044938.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194470024|ref|ZP_03076008.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194734739|ref|YP_002114001.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197247594|ref|YP_002145862.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197264687|ref|ZP_03164761.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197362926|ref|YP_002142563.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|198243258|ref|YP_002214872.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|204929828|ref|ZP_03220849.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|207856339|ref|YP_002242990.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|213021515|ref|ZP_03335962.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
gi|213052429|ref|ZP_03345307.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213419934|ref|ZP_03353000.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
gi|213428022|ref|ZP_03360772.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. E02-1180]
gi|213581370|ref|ZP_03363196.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
gi|213620715|ref|ZP_03373498.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
gi|213649852|ref|ZP_03379905.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. J185]
gi|213865354|ref|ZP_03387473.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
gi|224582756|ref|YP_002636554.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|238913424|ref|ZP_04657261.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
gi|289825000|ref|ZP_06544363.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|54036861|sp|P67650|CLPS_SALTI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|54041058|sp|P67649|CLPS_SALTY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67460139|sp|Q57R56|CLPS_SALCH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67460197|sp|Q5PGK0|CLPS_SALPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|189082477|sp|A9N7Z5|CLPS_SALPB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238689929|sp|B5BBT0|CLPS_SALPK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238690018|sp|B5F127|CLPS_SALA4 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238690349|sp|B5FQ21|CLPS_SALDC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238690424|sp|B5QYM8|CLPS_SALEP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238690613|sp|B4TD06|CLPS_SALHS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238693573|sp|B4T0G6|CLPS_SALNS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238693662|sp|B4TRR1|CLPS_SALSV RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|254763823|sp|C0PXR3|CLPS_SALPC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|25321103|pir||AH0609 conserved hypothetical protein STY0942 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16419456|gb|AAL19880.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16502110|emb|CAD05346.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138040|gb|AAO69601.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56128260|gb|AAV77766.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62127102|gb|AAX64805.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161364189|gb|ABX67957.1| hypothetical protein SPAB_02578 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403454|gb|ACF63676.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194408690|gb|ACF68909.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194456388|gb|EDX45227.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194710241|gb|ACF89462.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195630880|gb|EDX49466.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197094403|emb|CAR59919.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211297|gb|ACH48694.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197242942|gb|EDY25562.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197290191|gb|EDY29548.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197937774|gb|ACH75107.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|204320822|gb|EDZ06023.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205324512|gb|EDZ12351.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205329607|gb|EDZ16371.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205334903|gb|EDZ21667.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205340436|gb|EDZ27200.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205343076|gb|EDZ29840.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205347686|gb|EDZ34317.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206708142|emb|CAR32435.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467283|gb|ACN45113.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|261246161|emb|CBG23965.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267992673|gb|ACY87558.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhimurium str.
14028S]
gi|301157489|emb|CBW16979.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911934|dbj|BAJ35908.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhimurium str.
T000240]
gi|320085181|emb|CBY94968.1| ATP-dependent Clp protease adapter protein clpS [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321223269|gb|EFX48338.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322616381|gb|EFY13290.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322619631|gb|EFY16506.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322622673|gb|EFY19518.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322628586|gb|EFY25373.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322631522|gb|EFY28278.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322637049|gb|EFY33752.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322641753|gb|EFY38389.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322644455|gb|EFY40995.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322649575|gb|EFY46006.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322654123|gb|EFY50446.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658038|gb|EFY54305.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322663512|gb|EFY59714.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322670248|gb|EFY66388.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322671484|gb|EFY67606.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322676840|gb|EFY72907.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322682765|gb|EFY78784.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322686444|gb|EFY82426.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322713939|gb|EFZ05510.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Choleraesuis str. A50]
gi|323129211|gb|ADX16641.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|323196102|gb|EFZ81265.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323196752|gb|EFZ81896.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323202968|gb|EFZ88002.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323209009|gb|EFZ93946.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323211914|gb|EFZ96742.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323215154|gb|EFZ99899.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323222357|gb|EGA06735.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323226878|gb|EGA11061.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323229832|gb|EGA13955.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323233057|gb|EGA17153.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323240792|gb|EGA24834.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323243109|gb|EGA27129.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323247430|gb|EGA31386.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323251652|gb|EGA35519.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323257360|gb|EGA41058.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323261949|gb|EGA45515.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323267964|gb|EGA51443.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323271969|gb|EGA55384.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326622625|gb|EGE28970.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
Length = 106
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 63/97 (64%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D E ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|319944074|ref|ZP_08018353.1| ATP-dependent Clp protease [Lautropia mirabilis ATCC 51599]
gi|319742651|gb|EFV95059.1| ATP-dependent Clp protease [Lautropia mirabilis ATCC 51599]
Length = 102
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/98 (46%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 41 DNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
N + ++ P LY+VLL+ND++TPM+FV+ VLQ FF E A +ML+VHH
Sbjct: 4 SNDPSVVLEREQLALKPPPLYKVLLLNDDFTPMDFVVQVLQKFFSMSLEKATDVMLQVHH 63
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G G CG++ +IA KV QV ++RQHQ+PLQC+ME+
Sbjct: 64 EGRGVCGMFPRDIALTKVEQVSGFARQHQHPLQCVMEE 101
>gi|152969471|ref|YP_001334580.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|206576057|ref|YP_002239467.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
pneumoniae 342]
gi|238893943|ref|YP_002918677.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
pneumoniae NTUH-K2044]
gi|288936315|ref|YP_003440374.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
variicola At-22]
gi|290510629|ref|ZP_06549999.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp.
1_1_55]
gi|329998510|ref|ZP_08303132.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp. MS
92-3]
gi|166214736|sp|A6T6X9|CLPS_KLEP7 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238066652|sp|B5XYB2|CLPS_KLEP3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|150954320|gb|ABR76350.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|206565115|gb|ACI06891.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
pneumoniae 342]
gi|238546259|dbj|BAH62610.1| ATP-dependent Clp protease adaptor protein [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|288891024|gb|ADC59342.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
variicola At-22]
gi|289777345|gb|EFD85343.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp.
1_1_55]
gi|328538655|gb|EGF64752.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella sp. MS
92-3]
Length = 105
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/106 (47%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+K+ +F++ +D EVR + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A
Sbjct: 1 MSKRDWLDFEHLVDDEVRDA--IKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERAT 58
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH++G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 59 QLMLTVHYEGKAICGVFTAEVAETKVAMVNQYARENEHPLLCTLEK 104
>gi|85059079|ref|YP_454781.1| ATP-dependent Clp protease adaptor protein ClpS [Sodalis
glossinidius str. 'morsitans']
gi|123519578|sp|Q2NTZ9|CLPS_SODGM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|84779599|dbj|BAE74376.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 106
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 66/104 (63%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
K D +E + VR P +Y+V+L+ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GKTSDRLDEQHLAEEQVKDAVRPPSMYKVILINDDYTPMEFVIDVLQKFFSYDVERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML+VH+QG CG+Y E+AE K V Y+R++++PL C +E+
Sbjct: 62 MLRVHYQGKAVCGIYTAEVAETKAVHVNRYARENEHPLLCTLEK 105
>gi|83721401|ref|YP_441318.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
thailandensis E264]
gi|167561846|ref|ZP_02354762.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
oklahomensis EO147]
gi|167569069|ref|ZP_02361943.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
oklahomensis C6786]
gi|167580102|ref|ZP_02372976.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
thailandensis TXDOH]
gi|167618167|ref|ZP_02386798.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
thailandensis Bt4]
gi|257140007|ref|ZP_05588269.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
thailandensis E264]
gi|123537862|sp|Q2T0I1|CLPS_BURTA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|83655226|gb|ABC39289.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
thailandensis E264]
Length = 104
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 67/95 (70%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R K++ P +Y+V+L+ND++TPMEFV+ ++Q +F KD ETA IMLKVH +G
Sbjct: 9 DSTVLERKEQKLKPPSMYKVVLLNDDFTPMEFVVMIVQEYFKKDRETATQIMLKVHREGR 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 69 GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|262402498|ref|ZP_06079059.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. RC586]
gi|262351280|gb|EEZ00413.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. RC586]
Length = 106
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 62/98 (63%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D + + V+ P +Y V+L ND+YT M+FVI +L+ FF D E A +MLKVH+
Sbjct: 8 VSPDFDLLEKEKTAVKPPSMYHVVLNNDDYTSMDFVIEILERFFSMDIERATQVMLKVHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CG + E+AE KV QV YSR++++PL C MEQ
Sbjct: 68 EGKAICGTFTAEVAETKVAQVTMYSRENEHPLLCTMEQ 105
>gi|91784980|ref|YP_560186.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
xenovorans LB400]
gi|170693565|ref|ZP_02884723.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
graminis C4D1M]
gi|296157172|ref|ZP_06840008.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
Ch1-1]
gi|307730769|ref|YP_003907993.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
CCGE1003]
gi|323527132|ref|YP_004229285.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
CCGE1001]
gi|122970195|sp|Q13UV5|CLPS_BURXL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|91688934|gb|ABE32134.1| Putative ATP-dependent Clp protease adaptor protein ClpS
[Burkholderia xenovorans LB400]
gi|170141347|gb|EDT09517.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
graminis C4D1M]
gi|295892508|gb|EFG72290.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
Ch1-1]
gi|307585304|gb|ADN58702.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
CCGE1003]
gi|323384134|gb|ADX56225.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia sp.
CCGE1001]
Length = 104
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R K++ P +Y+V+L+ND++TPMEFV+ ++Q +F KD ETA +MLKVH +G
Sbjct: 9 DGTVLERQEKKLKPPSMYKVVLLNDDFTPMEFVVMIVQEYFNKDRETATQVMLKVHREGR 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 69 GVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|300716062|ref|YP_003740865.1| ATP-dependent Clp protease adaptor protein [Erwinia billingiae
Eb661]
gi|299061898|emb|CAX59014.1| ATP-dependent Clp protease adaptor protein [Erwinia billingiae
Eb661]
Length = 106
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
N F++ D ++R ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A
Sbjct: 3 NTNDWLNFEHLADDKLREG--LKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDTERATQ 60
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH+QG CGVY E+AE KV V Y+R++++PL C +E+
Sbjct: 61 LMLAVHYQGKAICGVYTAEVAETKVAHVNKYARENEHPLLCTLEK 105
>gi|253990327|ref|YP_003041683.1| ATP-dependent Clp protease adaptor protein ClpS [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253781777|emb|CAQ84940.1| atp-dependent clp protease adaptor protein clps [Photorhabdus
asymbiotica]
Length = 106
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 45/96 (46%), Positives = 62/96 (64%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
N + K++ P +Y+V+L ND+YTPMEFV+ VL+ FF D E A +ML VH+QG
Sbjct: 10 NKESVKDERQHKLQPPSMYQVILNNDDYTPMEFVVDVLRKFFSYDVERATQLMLDVHYQG 69
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
CGVY E+AE K QV Y+R+ Q+PL C +E+
Sbjct: 70 KAVCGVYTAEVAETKAAQVNMYAREQQHPLLCTLEK 105
>gi|134095622|ref|YP_001100697.1| ATP-dependent Clp protease adaptor protein ClpS [Herminiimonas
arsenicoxydans]
gi|254763818|sp|A4G7T9|CLPS_HERAR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|133739525|emb|CAL62576.1| ATP-dependent Clp protease adaptor protein ClpS [Herminiimonas
arsenicoxydans]
Length = 102
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 49/101 (48%), Positives = 69/101 (68%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+A + +R K++ P +Y+VLL+ND+YTPMEFV+ +LQ +F KD ETA IML
Sbjct: 1 MAIKHDDGTVLMRQEQKLKPPSMYQVLLLNDDYTPMEFVVMILQEYFSKDRETATQIMLM 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH G G CGVY +IA KV V+N++R+ +PLQC+ME+
Sbjct: 61 VHRDGKGICGVYPKDIASTKVELVLNHARKAGHPLQCVMEE 101
>gi|226939299|ref|YP_002794370.1| ATP-dependent Clp protease adaptor protein ClpS [Laribacter
hongkongensis HLHK9]
gi|226714223|gb|ACO73361.1| ATP-dependent Clp protease adaptor protein ClpS [Laribacter
hongkongensis HLHK9]
Length = 103
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 63/87 (72%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+ P +Y+V+L+ND++TPM+FV+ VL+ FFY E A +MLK+H +G G CG +
Sbjct: 15 KIRTAPPPMYKVVLLNDDFTPMDFVVIVLERFFYMGREQATQVMLKIHTEGRGICGTFTR 74
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
++A KV+QV +Y+R H++PLQC+ME+
Sbjct: 75 DVAATKVSQVRDYARTHEHPLQCVMEE 101
>gi|268590195|ref|ZP_06124416.1| ATP-dependent Clp protease adaptor protein ClpS [Providencia
rettgeri DSM 1131]
gi|291314476|gb|EFE54929.1| ATP-dependent Clp protease adaptor protein ClpS [Providencia
rettgeri DSM 1131]
Length = 106
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 44/100 (44%), Positives = 63/100 (63%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
F + + ++ P +Y+VLL ND+YTPM+FV+ VLQ +F D E A IML V
Sbjct: 6 GTFKTDVIFKDEIEQTLQPPSMYKVLLNNDDYTPMDFVVEVLQKYFSFDEERATQIMLDV 65
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H QG G CG++ E+AE K QV ++R+H+YPL C +E+
Sbjct: 66 HIQGKGVCGIFTAEVAETKAAQVNTFAREHEYPLLCTIEK 105
>gi|218673814|ref|ZP_03523483.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli
GR56]
Length = 86
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 56/86 (65%), Positives = 74/86 (86%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
K + P LYRVLL+ND+YTPMEFVIH+L+ FF KD E+A IML VH+ G+GECG++ YE+
Sbjct: 1 KTKKPNLYRVLLLNDDYTPMEFVIHILERFFQKDRESATRIMLHVHNHGVGECGIFTYEV 60
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
AE KV+QVM+++RQHQ+PLQC+ME+K
Sbjct: 61 AETKVSQVMDFARQHQHPLQCVMEKK 86
>gi|17547184|ref|NP_520586.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
solanacearum GMI1000]
gi|21542317|sp|Q8XWK9|CLPS_RALSO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|17429486|emb|CAD16172.1| hypothetical atp-dependent clp protease adaptor protein clps
[Ralstonia solanacearum GMI1000]
gi|299065938|emb|CBJ37119.1| ATP-dependent Clp protease adapter protein clpS [Ralstonia
solanacearum CMR15]
Length = 108
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 64/96 (66%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ R ++ P +Y+VLL+ND+YTPMEFV+ +LQ +F KD ETA IML VH +G
Sbjct: 12 DAGTVLERKEQALKPPAMYKVLLLNDDYTPMEFVVMILQQYFSKDRETATQIMLTVHREG 71
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG+Y +IA KV V ++RQ +PLQC+ME+
Sbjct: 72 RGVCGIYTRDIAATKVELVSTHARQAGHPLQCVMEE 107
>gi|83746257|ref|ZP_00943310.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
solanacearum UW551]
gi|207723598|ref|YP_002253997.1| atp-dependent clp protease adaptor protein clps [Ralstonia
solanacearum MolK2]
gi|207742558|ref|YP_002258950.1| atp-dependent clp protease adaptor protein clps [Ralstonia
solanacearum IPO1609]
gi|300690670|ref|YP_003751665.1| ATP-dependent Clp protease adapter protein clpS [Ralstonia
solanacearum PSI07]
gi|300703254|ref|YP_003744856.1| ATP-dependent clp protease adapter protein clps [Ralstonia
solanacearum CFBP2957]
gi|83727007|gb|EAP74132.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
solanacearum UW551]
gi|206588800|emb|CAQ35763.1| atp-dependent clp protease adaptor protein clps [Ralstonia
solanacearum MolK2]
gi|206593951|emb|CAQ60878.1| atp-dependent clp protease adaptor protein clps [Ralstonia
solanacearum IPO1609]
gi|299070917|emb|CBJ42221.1| ATP-dependent Clp protease adapter protein clpS [Ralstonia
solanacearum CFBP2957]
gi|299077730|emb|CBJ50368.1| ATP-dependent Clp protease adapter protein clpS [Ralstonia
solanacearum PSI07]
Length = 108
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 64/96 (66%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ R ++ P +Y+VLL+ND+YTPMEFV+ +LQ +F KD ETA IML VH +G
Sbjct: 12 DAGTVLERKEQALKPPAMYKVLLLNDDYTPMEFVVMILQQYFSKDRETATQIMLTVHREG 71
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG+Y +IA KV V ++RQ +PLQC+ME+
Sbjct: 72 KGVCGIYTRDIAATKVELVSTHARQAGHPLQCVMEE 107
>gi|238920382|ref|YP_002933897.1| hypothetical protein NT01EI_2492 [Edwardsiella ictaluri 93-146]
gi|259491247|sp|C5BEA1|CLPS_EDWI9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238869951|gb|ACR69662.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 106
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 60/91 (65%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E + V+ P LY V+L ND+YTPMEFVI VLQ FF D E A +ML VH++G CG
Sbjct: 15 EDQTRRAVKPPSLYSVILNNDDYTPMEFVIEVLQTFFAYDIERATQLMLTVHYKGKAVCG 74
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
V+ E+AE KV + Y+R +++PL C +E+
Sbjct: 75 VFTAEVAETKVALINRYARDNEHPLLCTLEK 105
>gi|322832165|ref|YP_004212192.1| ATP-dependent Clp protease adaptor protein ClpS [Rahnella sp.
Y9602]
gi|321167366|gb|ADW73065.1| ATP-dependent Clp protease adaptor protein ClpS [Rahnella sp.
Y9602]
Length = 106
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 65/104 (62%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ + + +V+ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GNNQDWLNFEHLAADKQKDEVKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML+VH++G CGVY E+AE KV V Y++++++PL C +E+
Sbjct: 62 MLQVHYRGKAICGVYTAEVAETKVAHVNEYAKENEHPLLCTLEK 105
>gi|205352155|ref|YP_002225956.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|238690486|sp|B5R8G5|CLPS_SALG2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|205271936|emb|CAR36780.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326627199|gb|EGE33542.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
Length = 106
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 62/97 (63%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D E ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +M VH+Q
Sbjct: 9 DFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMFAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|238028418|ref|YP_002912649.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
glumae BGR1]
gi|237877612|gb|ACR29945.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
glumae BGR1]
Length = 104
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 49/111 (44%), Positives = 70/111 (63%), Gaps = 8/111 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
MA + R K++ P +Y+V+L+ND++TPMEFV+ V+Q +F KD
Sbjct: 1 MAIIPDKQDN--------TVLERSEQKLKPPSMYKVVLLNDDFTPMEFVVMVVQEYFKKD 52
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ETA IML+VH +G G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 53 RETATQIMLRVHREGRGVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|156934623|ref|YP_001438539.1| ATP-dependent Clp protease adaptor protein ClpS [Cronobacter
sakazakii ATCC BAA-894]
gi|260597283|ref|YP_003209854.1| ATP-dependent Clp protease adaptor protein ClpS [Cronobacter
turicensis z3032]
gi|166214735|sp|A7MEQ8|CLPS_ENTS8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|156532877|gb|ABU77703.1| hypothetical protein ESA_02457 [Cronobacter sakazakii ATCC BAA-894]
gi|260216460|emb|CBA29592.1| ATP-dependent Clp protease adapter protein clpS [Cronobacter
turicensis z3032]
Length = 106
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 46/103 (44%), Positives = 65/103 (63%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
K + D +E ++ P +Y+V+L+ND+YTPMEFVI VLQ FF D E A +M
Sbjct: 3 KDKSWLDFDHLAEDDLREALKPPSMYKVILMNDDYTPMEFVIDVLQKFFSYDVERATQLM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L VH+QG CGV+ E+AE KV V Y+R++ +PL C +E+
Sbjct: 63 LTVHYQGKAICGVFTAEVAETKVALVNKYARENDHPLLCTLEK 105
>gi|317491428|ref|ZP_07949864.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316920975|gb|EFV42298.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 107
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 61/85 (71%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+V+ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +ML VH++G CGV+ E+
Sbjct: 21 EVKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYKGKAICGVFTAEV 80
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
AE KV V Y+R++++PL C +E+
Sbjct: 81 AETKVAHVNRYARENEHPLLCTLEK 105
>gi|121594198|ref|YP_986094.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax sp.
JS42]
gi|120606278|gb|ABM42018.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax sp.
JS42]
Length = 135
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 17 GILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFV 75
+ M+ + + +D + + K + P++Y+V+++ND+YTPMEFV
Sbjct: 12 ARMKFMATTPPIPAPVPAPTPPSWDEGGSVVLERRTQKTQPPQMYQVVMLNDDYTPMEFV 71
Query: 76 IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
+ VLQ FF KD E A IMLK+H G G CGVY ++A KV+QV+ + + +PLQC+
Sbjct: 72 VVVLQEFFNKDREAATQIMLKIHLDGKGVCGVYTRDVAATKVDQVLEAAHKAGHPLQCLS 131
Query: 136 EQ 137
E
Sbjct: 132 EP 133
>gi|37525540|ref|NP_928884.1| ATP-dependent Clp protease adaptor protein ClpS [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|39930943|sp|Q7N6F7|CLPS_PHOLL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|36784968|emb|CAE13886.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 106
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 61/93 (65%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+ K++ P +Y+V+L ND+YTPMEFV+ VL+ FF D E A +ML VH+QG
Sbjct: 13 SVKDERQQKLQPPSMYQVILNNDDYTPMEFVVDVLRKFFSYDIERATQLMLDVHYQGKAV 72
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
CGVY E+AE K QV Y++++ +PL C +E+
Sbjct: 73 CGVYTAEVAETKAAQVNMYAKEYGHPLLCTLEK 105
>gi|259908937|ref|YP_002649293.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia pyrifoliae
Ep1/96]
gi|224964559|emb|CAX56072.1| ATP-dependent Clp protease adaptor protein [Erwinia pyrifoliae
Ep1/96]
gi|283478941|emb|CAY74857.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia pyrifoliae
DSM 12163]
Length = 106
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 60/89 (67%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ ++ P +Y+V+L ND++TPMEFVI VLQ FF D E A +ML VH+QG CGV+
Sbjct: 17 KVREALKPPSMYKVILNNDDFTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAVCGVF 76
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E+AE KV V Y+R +++PL C +E+
Sbjct: 77 TAEVAETKVAHVNKYARDNEHPLLCTLEK 105
>gi|262041017|ref|ZP_06014237.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|259041633|gb|EEW42684.1| ATP-dependent Clp protease adaptor protein ClpS [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
Length = 105
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+K+ +F++ +D EVR + ++ P +Y+V+ VND+YTPMEFVI VLQ FF D E A
Sbjct: 1 MSKRDWLDFEHLVDDEVRDA--IKPPSMYKVIFVNDDYTPMEFVIDVLQKFFSYDVERAT 58
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH++G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 59 QLMLTVHYEGKAICGVFTAEVAETKVAMVNQYARENEHPLLCTLEK 104
>gi|161897896|ref|YP_433586.2| ATP-dependent Clp protease adaptor protein ClpS [Hahella chejuensis
KCTC 2396]
Length = 126
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 58/106 (54%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
++ + ++ P +Y+V+++ND+YTPM+FV+ VL FF A
Sbjct: 19 EDEGNQDGDHPGSLALAPEKPALKRPSMYQVVMLNDDYTPMDFVVEVLIRFFNMSEPKAT 78
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH QG CGV+ +IAE K QV YS + ++PL C +E+
Sbjct: 79 QVMLAVHTQGRAVCGVFTRDIAESKAAQVNQYSSECEHPLLCEIER 124
>gi|163751226|ref|ZP_02158454.1| hypothetical protein KT99_13792 [Shewanella benthica KT99]
gi|161328940|gb|EDQ00014.1| hypothetical protein KT99_13792 [Shewanella benthica KT99]
Length = 102
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 66/92 (71%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E R S++ P +Y+V+L ND+YTPM+FVI +LQ FF K+ + A IML +HHQG G C
Sbjct: 10 VEERVESELMPPSMYKVVLNNDDYTPMDFVIEILQLFFKKNEQEATDIMLAIHHQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GV+ + IAE KV QV ++RQ+++PL C +E+
Sbjct: 70 GVFPFGIAETKVAQVNQFARQNEHPLLCSLEK 101
>gi|297539530|ref|YP_003675299.1| ATP-dependent Clp protease adaptor protein ClpS [Methylotenera sp.
301]
gi|297258877|gb|ADI30722.1| ATP-dependent Clp protease adaptor protein ClpS [Methylotenera sp.
301]
Length = 108
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 48/103 (46%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
K F+N + + + K ++P ++ VLL+ND+YTPMEFV+ ++ FF K E A IM
Sbjct: 6 KNAKPFENDVALKPEVA-KPKLPPMFNVLLLNDDYTPMEFVVECIERFFNKSREQATQIM 64
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
LKVH +G+ CGVY +IAE K+NQV++Y+R Q+PLQC+ E
Sbjct: 65 LKVHTEGLAVCGVYPQDIAETKMNQVLSYARDQQHPLQCVTEP 107
>gi|258405491|ref|YP_003198233.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfohalobium
retbaense DSM 5692]
gi|257797718|gb|ACV68655.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfohalobium
retbaense DSM 5692]
Length = 103
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 46/99 (46%), Positives = 60/99 (60%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
E D + E + V+ P Y+VLL ND+YT MEFV+ VL + F K A IML VH
Sbjct: 4 ENDPRIVPEKGEETAVKEPSRYKVLLHNDDYTTMEFVVQVLMDIFNKSEAEATQIMLNVH 63
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G+G CG+Y E+AE KV V +R+H YPL+C ME+
Sbjct: 64 KNGVGVCGIYTAEVAETKVAMVSQMARKHGYPLKCTMEE 102
>gi|300722512|ref|YP_003711802.1| modulator of ClpA substrate specificity [Xenorhabdus nematophila
ATCC 19061]
gi|297629019|emb|CBJ89604.1| modulator of ClpA substrate specificity [Xenorhabdus nematophila
ATCC 19061]
Length = 106
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 61/92 (66%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
+ +R P +Y+V+L ND+YTPMEFV+ VLQ FF + E A +ML VH++G C
Sbjct: 14 IKDDTKQTLRPPSMYQVVLNNDDYTPMEFVVDVLQKFFSYNVERATQLMLDVHYKGKAVC 73
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G+Y E+AE K QV Y+R+H++PL C +E+
Sbjct: 74 GIYTAEVAETKAAQVNMYAREHEHPLLCTLEK 105
>gi|260779177|ref|ZP_05888069.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
coralliilyticus ATCC BAA-450]
gi|260605341|gb|EEX31636.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
coralliilyticus ATCC BAA-450]
Length = 106
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 63/98 (64%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D +KV+ P +Y V+L ND+YTPM+FVI +L+ FF D + A +MLKVH+
Sbjct: 8 VTPDSDLLELEKTKVKPPSMYNVVLNNDDYTPMDFVIEILERFFSMDIDKATQVMLKVHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CG + E+AE KV QV YS+++++PL C MEQ
Sbjct: 68 EGKAICGTFTAEVAETKVAQVTMYSQENEHPLLCTMEQ 105
>gi|291334349|gb|ADD94008.1| hypothetical protein ED21_23138 [uncultured marine bacterium
MedDCM-OCT-S11-C310]
Length = 112
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M+D N + ++ KV+ PK Y+VLL NDNYT MEFV+ VL+ F+ +
Sbjct: 1 MSDGNDNWEDEP-YEGEGQVATETEIKVKRPKRYKVLLHNDNYTTMEFVVLVLKTVFHLE 59
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+A +ML VH +G G GV++YE+AE KV++V +R H YPL+C ME
Sbjct: 60 EPSAVQVMLHVHRKGAGVAGVFSYEVAETKVHKVTELARAHDYPLRCSMEP 110
>gi|13470855|ref|NP_102424.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium loti
MAFF303099]
gi|21542310|sp|Q98MA3|CLPS1_RHILO RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
gi|14021598|dbj|BAB48210.1| mll0664 [Mesorhizobium loti MAFF303099]
Length = 109
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 57/103 (55%), Positives = 76/103 (73%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
E R +K + P LYRVL++ND+YTPMEFV+HVL+ FF KD E A IML
Sbjct: 7 DGNEAGRGTAVITRTKTKTKKPSLYRVLILNDDYTPMEFVVHVLERFFQKDREAATRIML 66
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH+ G+GECGVY +E+AE KV+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 67 HVHNHGVGECGVYTFEVAETKVSQVMDFARQNQHPLQCVMEKK 109
>gi|54308344|ref|YP_129364.1| ATP-dependent Clp protease adaptor protein ClpS [Photobacterium
profundum SS9]
gi|67460286|sp|Q6LT14|CLPS_PHOPR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|46912772|emb|CAG19562.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 106
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D + +V+ P +Y+V+L ND+YTPM+FVI VLQ FF D E A +ML VH++G
Sbjct: 10 PESDVLDKEEVQVKPPAMYKVVLNNDDYTPMDFVIEVLQKFFSMDMEKATQLMLNVHYEG 69
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
CG + E+AE KV QVM ++R++++PL C ME+
Sbjct: 70 KAICGTFTAEVAETKVAQVMMHARENEHPLLCTMEK 105
>gi|200390037|ref|ZP_03216648.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|199602482|gb|EDZ01028.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
Length = 106
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 61/84 (72%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+QG CGV+ E+A
Sbjct: 22 LKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVA 81
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
E KV V Y+R++++PL C +E+
Sbjct: 82 ETKVAMVNKYARENEHPLLCTLEK 105
>gi|21231414|ref|NP_637331.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66768532|ref|YP_243294.1| ATP-dependent Clp protease adaptor protein ClpS [Xanthomonas
campestris pv. campestris str. 8004]
gi|24638420|sp|Q8P999|CLPS_XANCP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|81305496|sp|Q4UUJ9|CLPS_XANC8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|21113082|gb|AAM41255.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573864|gb|AAY49274.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 106
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 53/106 (50%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M +K E D+ L E +V P Y+VLL+ND+YTPM+FV+ VLQ FF + E A
Sbjct: 1 MPRKTSHEHDHGLVVET-SKPEVAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLELERAT 59
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH +G G CGVY+ E+AE KV QV +SR +Q+PL C MEQ
Sbjct: 60 QVMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQ 105
>gi|78776659|ref|YP_392974.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurimonas
denitrificans DSM 1251]
gi|78497199|gb|ABB43739.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurimonas
denitrificans DSM 1251]
Length = 99
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 44/97 (45%), Positives = 65/97 (67%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+D E + K++ PK Y+VLL+ND+YT MEFVI +L F+K++E A IML++H +
Sbjct: 3 TNIDLETKEKVKIKYPKKYKVLLLNDDYTSMEFVIDILITIFHKNYEQAHQIMLEIHKKT 62
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G CG+Y YEIAE KV QV +R + + L+ ME++
Sbjct: 63 KGICGIYTYEIAETKVMQVHKKARDNGFALRATMEEE 99
>gi|261339214|ref|ZP_05967072.1| hypothetical protein ENTCAN_05442 [Enterobacter cancerogenus ATCC
35316]
gi|296103112|ref|YP_003613258.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|288319063|gb|EFC58001.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
cancerogenus ATCC 35316]
gi|295057571|gb|ADF62309.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295096412|emb|CBK85502.1| Uncharacterized conserved protein [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 106
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 66/97 (68%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+L+ND+YTPMEFVI VLQ FF D E A +ML VH++
Sbjct: 9 DFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYR 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG++ E+AE KV V +Y+R++++PL C +E+
Sbjct: 69 GKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEK 105
>gi|254428859|ref|ZP_05042566.1| ATP-dependent Clp protease adaptor protein ClpS [Alcanivorax sp.
DG881]
gi|196195028|gb|EDX89987.1| ATP-dependent Clp protease adaptor protein ClpS [Alcanivorax sp.
DG881]
Length = 94
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 62/90 (68%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
K++ P +Y+VL++ND+YTPM+FV+ +L++FF E A +ML VH +G CGV
Sbjct: 4 EEAKPKLKPPSMYKVLMLNDDYTPMDFVVEILEDFFNLGREQATRVMLTVHTEGKAVCGV 63
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
Y +IAE K QV+ Y+R++Q+PL C +EQ
Sbjct: 64 YPQDIAETKATQVVEYARENQHPLMCQVEQ 93
>gi|188534289|ref|YP_001908086.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia
tasmaniensis Et1/99]
gi|238689683|sp|B2VC66|CLPS_ERWT9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|188029331|emb|CAO97208.1| ATP-dependent Clp protease adaptor protein [Erwinia tasmaniensis
Et1/99]
Length = 106
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 61/89 (68%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ +++ P +Y+V+L ND++TPMEFVI VLQ FF D E A +ML VH+QG CGV+
Sbjct: 17 KVREELKPPSMYKVILNNDDFTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVF 76
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E+AE KV V Y+R +++PL C +E+
Sbjct: 77 TAEVAETKVAHVNKYARDNEHPLLCTLEK 105
>gi|325282898|ref|YP_004255439.1| ATP-dependent Clp protease adapter protein clpS [Deinococcus
proteolyticus MRP]
gi|324314707|gb|ADY25822.1| ATP-dependent Clp protease adapter protein clpS [Deinococcus
proteolyticus MRP]
Length = 109
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 66/101 (65%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
+ D ++ ++ R P+L+RVLL+ND+YTPM+FV+ VL+ +F K + A+ IML V
Sbjct: 4 PDTDRAGHTQTLERTETRKPRLWRVLLLNDDYTPMDFVVLVLERYFRKTEQDAELIMLAV 63
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
HH+G G GVY +IAE KV QV +RQ YPL+ + E +
Sbjct: 64 HHKGQGVAGVYTRDIAETKVAQVTQLARQEGYPLRVLAEPE 104
>gi|332162228|ref|YP_004298805.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318606291|emb|CBY27789.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325666458|gb|ADZ43102.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330860566|emb|CBX70865.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
enterocolitica W22703]
Length = 115
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 45/109 (41%), Positives = 66/109 (60%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
D + K + + + ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E
Sbjct: 6 DGQAMGKNNDWLNFEHLVKDKQIEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIE 65
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A +ML VH+QG CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 66 RATQLMLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 114
>gi|114332013|ref|YP_748235.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosomonas
eutropha C91]
gi|122313284|sp|Q0AEG2|CLPS_NITEC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|114309027|gb|ABI60270.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosomonas
eutropha C91]
Length = 103
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 67/94 (71%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+ +++ P LY+V+L+ND++TPM+FV+ VL++FF+ D E A IMLK+H +G G
Sbjct: 10 SVIEKGKTRLTPPPLYKVILINDDFTPMDFVVKVLRHFFFMDEEMATRIMLKIHTEGAGI 69
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG Y +IA KV QV +S+Q+Q+PL C+ME++
Sbjct: 70 CGTYPGDIAATKVQQVNEFSKQNQHPLMCVMEKE 103
>gi|78485455|ref|YP_391380.1| ATP-dependent Clp protease adaptor protein ClpS [Thiomicrospira
crunogena XCL-2]
gi|123555526|sp|Q31GL7|CLPS_THICR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|78363741|gb|ABB41706.1| ATP-dependent Clp protease adaptor protein ClpS [Thiomicrospira
crunogena XCL-2]
Length = 104
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
D+ + E KV+ PK Y+V+L+ND++TPM+FV+ VL FF D A +M
Sbjct: 2 PSQPFQDDGVVLET-ARPKVKPPKRYQVVLLNDDFTPMDFVVDVLTRFFGMDEAKANAVM 60
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
L VH +G G CGVY+ E+AEMKV QV Y+R+HQ+PLQC ME
Sbjct: 61 LAVHTKGKGTCGVYSREVAEMKVMQVNQYAREHQHPLQCEME 102
>gi|261252480|ref|ZP_05945053.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio orientalis
CIP 102891]
gi|260935871|gb|EEX91860.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio orientalis
CIP 102891]
Length = 106
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 62/98 (63%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D +KV+ P +Y V+L ND+YTPM+FVI +L+ FF D + A +ML+VH+
Sbjct: 8 VTPDSDLLELEKTKVKPPSMYNVVLNNDDYTPMDFVIEILERFFSMDIDKATQVMLQVHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CG Y E+AE KV QV YS ++++PL C MEQ
Sbjct: 68 EGKAICGTYTAEVAETKVAQVTMYSTENEHPLLCTMEQ 105
>gi|119897424|ref|YP_932637.1| ATP-dependent Clp protease adaptor protein ClpS [Azoarcus sp. BH72]
gi|166214724|sp|A1K4J5|CLPS_AZOSB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|119669837|emb|CAL93750.1| ClpS protein [Azoarcus sp. BH72]
Length = 102
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
++ R P LY+VLL+ND++TPM+FVI VLQ +F D E A +ML+VH +G+
Sbjct: 7 DGFVLEAKRTRTRPPPLYKVLLLNDDFTPMDFVIVVLQKYFSMDRERATRVMLQVHREGM 66
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ +IA KV QV++++RQHQ+PL C+ME+
Sbjct: 67 GVCGVFPRDIASTKVEQVVSFARQHQHPLACVMEE 101
>gi|294636953|ref|ZP_06715277.1| ATP-dependent Clp protease adaptor protein ClpS [Edwardsiella tarda
ATCC 23685]
gi|291089846|gb|EFE22407.1| ATP-dependent Clp protease adaptor protein ClpS [Edwardsiella tarda
ATCC 23685]
Length = 106
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/111 (42%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
MA+ D R V+ P LY V+L ND+YTPMEFVI VLQ FF D
Sbjct: 1 MANLNDWLNLEPLADE------RTREAVKPPSLYSVILNNDDYTPMEFVIEVLQKFFTYD 54
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E A +ML VH++G CGV+ E+AE KV + Y+R++ +PL C +E+
Sbjct: 55 IERATQLMLTVHYKGKAVCGVFTAEVAETKVALINRYARENDHPLLCTLEK 105
>gi|310767160|gb|ADP12110.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia sp.
Ejp617]
Length = 106
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 60/89 (67%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ ++ P +Y+V+L ND++TPMEFVI VLQ FF D E A +ML VH+QG CGV+
Sbjct: 17 KVREALKPPSMYKVILNNDDFTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVF 76
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E+AE KV V Y+R +++PL C +E+
Sbjct: 77 TAEVAETKVAHVNKYARDNEHPLLCTLEK 105
>gi|253997306|ref|YP_003049370.1| ATP-dependent Clp protease adaptor protein ClpS [Methylotenera
mobilis JLW8]
gi|253983985|gb|ACT48843.1| ATP-dependent Clp protease adaptor protein ClpS [Methylotenera
mobilis JLW8]
Length = 103
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/96 (52%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
Query: 42 NCLDSEVRFS-SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ D ++ +K ++P +++VLL+ND+YTPMEFVI V++ FF K E A IMLKVH +
Sbjct: 6 HENDIALKPEVAKPKLPPMFKVLLLNDDYTPMEFVIEVIERFFNKSREQATQIMLKVHTE 65
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
G G CG+Y +IAE K+NQV++Y+RQ Q+PLQCI+E
Sbjct: 66 GAGICGIYPQDIAETKMNQVVSYARQSQHPLQCIVE 101
>gi|73542438|ref|YP_296958.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia eutropha
JMP134]
gi|123624188|sp|Q46XL9|CLPS_RALEJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|72119851|gb|AAZ62114.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia eutropha
JMP134]
Length = 108
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
R +++ P +Y+V+L+ND+YTPMEFV+ +LQ +F +D ETA IML VH +G
Sbjct: 12 EAGTILERKEQQLKPPAMYKVVLLNDDYTPMEFVVMILQQYFSRDRETATQIMLTVHREG 71
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG+Y +IA KV V ++RQ +PLQC+ME+
Sbjct: 72 KGVCGIYTRDIAATKVELVSTHARQAGHPLQCVMEE 107
>gi|331672424|ref|ZP_08373214.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
TA280]
gi|331070330|gb|EGI41695.1| ATP-dependent Clp protease adaptor protein ClpS [Escherichia coli
TA280]
Length = 106
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFIAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|88860127|ref|ZP_01134766.1| modulator of ClpA substrate specificity [Pseudoalteromonas tunicata
D2]
gi|88818121|gb|EAR27937.1| modulator of ClpA substrate specificity [Pseudoalteromonas tunicata
D2]
Length = 105
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 51/103 (49%), Positives = 64/103 (62%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
G+ E D K+R PK Y V+L ND+YTPM+FVI V+ FF K E A IM
Sbjct: 2 SGLKESDLIDTVRENEKQKLRPPKQYHVILNNDDYTPMDFVIEVIMKFFNKTSEQAAEIM 61
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
LKVH++G CGVY+ EIAE KV QV Y+R +++PL C EQ
Sbjct: 62 LKVHYEGKAVCGVYSAEIAETKVAQVNQYARDNEHPLLCSYEQ 104
>gi|123441829|ref|YP_001005813.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|238762120|ref|ZP_04623093.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
kristensenii ATCC 33638]
gi|238789631|ref|ZP_04633414.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
frederiksenii ATCC 33641]
gi|158512680|sp|A1JMC5|CLPS_YERE8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|122088790|emb|CAL11596.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238699848|gb|EEP92592.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
kristensenii ATCC 33638]
gi|238722184|gb|EEQ13841.1| ATP-dependent Clp protease adapter protein clpS [Yersinia
frederiksenii ATCC 33641]
Length = 106
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
K + + + ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GKNNDWLNFEHLVKDKQIEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 62 MLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105
>gi|221134865|ref|ZP_03561168.1| ATP-dependent Clp protease adaptor protein ClpS [Glaciecola sp.
HTCC2999]
Length = 106
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 51/106 (48%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+K+ + D KV+ P +Y+V+L ND+YTPMEFV+ VL FF D E A
Sbjct: 1 MSKENTSTID-EHKINESVEKKVQPPSMYKVILNNDDYTPMEFVVEVLCRFFNMDGEKAN 59
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH+QG CGVY EIAE KV QV Y+++HQ+PL C EQ
Sbjct: 60 QVMLTVHYQGKAVCGVYTAEIAETKVMQVNQYAQKHQHPLLCSYEQ 105
>gi|187478584|ref|YP_786608.1| ATP-dependent Clp protease adaptor protein ClpS [Bordetella avium
197N]
gi|123514730|sp|Q2KZI1|CLPS_BORA1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|115423170|emb|CAJ49701.1| ATP-dependent clp protease adaptor protein [Bordetella avium 197N]
Length = 104
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 65/92 (70%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
+ S++ P +Y+V+L+ND+YTPMEFV+ VLQ FF K+ E A IML+VHH+G G C
Sbjct: 12 VAEKQSARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNQEEATRIMLQVHHEGRGIC 71
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GVY ++A ++ QV Y+R Q+PLQCIME
Sbjct: 72 GVYVRDVAATRIAQVAQYARARQHPLQCIMEP 103
>gi|308186236|ref|YP_003930367.1| ATP-dependent Clp protease adaptor protein [Pantoea vagans C9-1]
gi|308056746|gb|ADO08918.1| ATP-dependent Clp protease adaptor protein [Pantoea vagans C9-1]
Length = 126
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 18 ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
+ + ++ N F++ + +VR ++ P +Y+V+L ND+YTPMEFVI
Sbjct: 8 AIKRLKAKSQRNTMANTNDWLNFEHLAEDKVREG--LKPPSMYKVILNNDDYTPMEFVID 65
Query: 78 VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
V+Q FF D E A +MLKVH+ G CGV+ E+AE K QV NY+R++ +PL C +E+
Sbjct: 66 VVQKFFSYDVERATQLMLKVHYHGKAICGVFTAEVAETKAAQVNNYARENHHPLLCTLEK 125
>gi|319793921|ref|YP_004155561.1| ATP-dependent clp protease adaptor protein clps [Variovorax
paradoxus EPS]
gi|315596384|gb|ADU37450.1| ATP-dependent Clp protease adaptor protein ClpS [Variovorax
paradoxus EPS]
Length = 119
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 22 MSFIFMADSRMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
M+ D+ + K P++Y+V+++ND+YTPMEFVI VLQ
Sbjct: 1 MATRIPKTPPTPPAQKPAGDDGDSVVLERRPQKTAPPQMYQVVMLNDDYTPMEFVIVVLQ 60
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+F KD ETA IMLK+H G G CGVY+ ++A KVNQVM ++Q +PLQC+ E
Sbjct: 61 EYFSKDRETATQIMLKIHLDGRGVCGVYSRDMAATKVNQVMEAAQQAGHPLQCVSEP 117
>gi|171058346|ref|YP_001790695.1| ATP-dependent Clp protease adaptor protein ClpS [Leptothrix
cholodnii SP-6]
gi|238689087|sp|B1XY29|CLPS_LEPCP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|170775791|gb|ACB33930.1| ATP-dependent Clp protease adaptor protein ClpS [Leptothrix
cholodnii SP-6]
Length = 115
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 27 MADSRMNKKGIAEFDNCLD---SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF 83
M+D + N + + + +V P++Y+V+++ND++TPMEFV+ VLQ FF
Sbjct: 1 MSDQKPNTPNVPAPPDDGQGAVIAEKQLQRVEPPRVYQVVMLNDDFTPMEFVVMVLQQFF 60
Query: 84 YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
D E A IMLK+HH+G CGVY ++A KV V +R+ +PLQC ME
Sbjct: 61 RHDLEAATQIMLKIHHEGRAVCGVYTQDVAATKVEMVQAAARRAGHPLQCTME 113
>gi|154253238|ref|YP_001414062.1| ATP-dependent Clp protease adaptor protein ClpS [Parvibaculum
lavamentivorans DS-1]
gi|171769648|sp|A7HWX2|CLPS_PARL1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|154157188|gb|ABS64405.1| ATP-dependent Clp protease adaptor protein ClpS [Parvibaculum
lavamentivorans DS-1]
Length = 110
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/110 (48%), Positives = 74/110 (67%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
S ++G + + K + P LY+VLL+ND+YTPMEFV+HVL+ FF K +
Sbjct: 1 MSDDRRRGDEDGGAGTGVITKTKPKTKKPSLYKVLLLNDDYTPMEFVVHVLERFFNKGRD 60
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A IML VH G+G CG+Y YE+AE KV QVM++++QHQ+PLQC ME++
Sbjct: 61 EATVIMLHVHQHGVGICGLYTYEVAETKVTQVMDFAQQHQHPLQCTMERE 110
>gi|146311056|ref|YP_001176130.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter sp.
638]
gi|167008655|sp|A4W8P9|CLPS_ENT38 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|145317932|gb|ABP60079.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter sp.
638]
Length = 106
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
K +FD + +VR + ++ P +Y+V+L+ND+YTPMEFVI VLQ FF D E A
Sbjct: 3 KKNDWLDFDQLAEDKVRDA--LKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQ 60
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH++G CG++ E+AE KV V Y+R++++PL C +E+
Sbjct: 61 LMLTVHYRGKAICGIFTAEVAETKVAMVNEYARENEHPLLCTLEK 105
>gi|292487808|ref|YP_003530683.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia amylovora
CFBP1430]
gi|292899037|ref|YP_003538406.1| ATP-dependent Clp protease adaptor protein [Erwinia amylovora ATCC
49946]
gi|291198885|emb|CBJ45995.1| ATP-dependent Clp protease adaptor protein [Erwinia amylovora ATCC
49946]
gi|291553230|emb|CBA20275.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia amylovora
CFBP1430]
gi|312171926|emb|CBX80183.1| ATP-dependent Clp protease adaptor protein ClpS [Erwinia amylovora
ATCC BAA-2158]
Length = 106
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E + +++ P +Y+VLL ND++TPMEFVI VLQ FF D E A +ML VH+QG CG
Sbjct: 15 EDKVREELKPPSMYKVLLNNDDFTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICG 74
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
V+ E+AE KV V Y+R +++PL C +E+
Sbjct: 75 VFTAEVAETKVAHVNKYARDNEHPLLCTLEK 105
>gi|94311825|ref|YP_585035.1| ATP-dependent Clp protease adaptor protein ClpS [Cupriavidus
metallidurans CH34]
gi|158564205|sp|Q1LJB0|CLPS_RALME RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|93355677|gb|ABF09766.1| regulatory protein for ClpA substrate specificity [Cupriavidus
metallidurans CH34]
Length = 108
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 64/96 (66%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
R +++ P +Y+V+L+ND+YTPMEFV+ +LQ +F +D ETA IML VH +G
Sbjct: 12 ETGTVIERKEQQLKPPAMYKVVLLNDDYTPMEFVVMILQQYFSRDRETATQIMLTVHREG 71
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG+Y +IA KV V ++RQ +PLQC+ME+
Sbjct: 72 KGVCGIYTRDIAATKVELVSTHARQAGHPLQCVMEE 107
>gi|118591081|ref|ZP_01548480.1| ATP-dependent Clp protease adaptor protein ClpS [Stappia aggregata
IAM 12614]
gi|118436157|gb|EAV42799.1| ATP-dependent Clp protease adaptor protein ClpS [Stappia aggregata
IAM 12614]
Length = 121
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 58/103 (56%), Positives = 77/103 (74%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
D + R + + P LYRVLL+ND+YTPMEFVIHV++NFF K+ E A IML
Sbjct: 19 DNDGGDAGTVTVTRTKTVTKRPNLYRVLLLNDDYTPMEFVIHVVENFFQKNREEATRIML 78
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VHH G+GECG+Y+YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 79 HVHHHGVGECGIYSYEVAETKVTQVMDFARKHQHPLQCVMEKK 121
>gi|332110106|gb|EGJ10734.1| hypothetical protein RBXJA2T_10429 [Rubrivivax benzoatilyticus JA2]
Length = 110
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 48/108 (44%), Positives = 68/108 (62%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
G R + +V+ P LY+V+L+ND+YTPMEFV+ VLQ++F +D +
Sbjct: 1 MKPPPLPGQDGGAGGAVVAERKAQRVKPPSLYQVVLLNDDYTPMEFVVMVLQHYFQRDLD 60
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
TA IMLK+HH+G G CGVY ++A KV V+ +R+ +PLQCIME
Sbjct: 61 TATHIMLKIHHEGRGVCGVYPKDVAATKVELVLAAARRDGHPLQCIME 108
>gi|332088859|gb|EGI93971.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Shigella boydii 5216-82]
Length = 106
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE K+ V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKMAMVNKYARENEHPLLCTLEK 105
>gi|114563426|ref|YP_750939.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
frigidimarina NCIMB 400]
gi|122299542|sp|Q081G4|CLPS_SHEFN RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|114334719|gb|ABI72101.1| ATP-dependent Clp protease adaptor protein ClpS [Shewanella
frigidimarina NCIMB 400]
Length = 102
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/101 (45%), Positives = 71/101 (70%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+A+ N E + S+++ P +Y+V+L ND+YTPM+FV+ VLQ FF K+ + A IML
Sbjct: 1 MAKLGNVEHIEEKVESELQPPHMYKVVLNNDDYTPMDFVVEVLQRFFEKNEQQAVDIMLA 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+H+QG G CGV+ + IAE KV QV ++R++Q+PL C +E+
Sbjct: 61 IHNQGKGLCGVFPFGIAETKVFQVNQFARENQHPLLCTLEK 101
>gi|311280209|ref|YP_003942440.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
cloacae SCF1]
gi|308749404|gb|ADO49156.1| ATP-dependent Clp protease adaptor protein ClpS [Enterobacter
cloacae SCF1]
Length = 106
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D ++ + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLTKDQVRDALKPPAMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +EQ
Sbjct: 69 GKAICGVFTAEVAETKVAMVNQYARENEHPLLCTLEQ 105
>gi|326316818|ref|YP_004234490.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323373654|gb|ADX45923.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 112
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ G+ D+ + + + + P++Y+V+++ND+YTPMEFVI VLQ FF KD
Sbjct: 1 MTPTPPTGVPSRDDGGSVVLERRTQRTQPPQMYQVVMLNDDYTPMEFVIVVLQEFFGKDR 60
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E A IMLK+H G G CGVY+ ++A KV QV + + +PLQC+ E
Sbjct: 61 EAATQIMLKIHLDGKGVCGVYSRDVAATKVEQVREAAHKAGHPLQCLSEP 110
>gi|260222810|emb|CBA32750.1| ATP-dependent Clp protease adapter protein clpS [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 108
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 67/104 (64%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
K A D+ R S +V+ P +Y+V+++ND+YTPMEFV+ V+Q FF KD E A I
Sbjct: 2 KPPPAGGDDGTVVLERLSQRVQPPSMYQVVMLNDDYTPMEFVVVVIQEFFGKDLEAATQI 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
MLK+H G G CGVY +IA KV+QV+ + + +PL+C+ E
Sbjct: 62 MLKIHLDGRGVCGVYPKDIAATKVDQVLEAAHKAGHPLKCVSEP 105
>gi|184158341|ref|YP_001846680.1| ATP-dependent Clp protease adaptor protein ClpS [Acinetobacter
baumannii ACICU]
gi|183209935|gb|ACC57333.1| uncharacterized conserved protein [Acinetobacter baumannii ACICU]
Length = 93
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/87 (47%), Positives = 59/87 (67%)
Query: 52 SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+++ P LY V+L+ND+YTPM+FVI +LQ +F + + A +ML VH++G G GVY +
Sbjct: 6 PELKRPPLYAVVLLNDDYTPMDFVIEILQQYFAMNLDQATQVMLTVHYEGKGTAGVYPRD 65
Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IAE K N V NY+R +PL C +E K
Sbjct: 66 IAETKANLVNNYARSQGHPLLCQIEPK 92
>gi|187929804|ref|YP_001900291.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
pickettii 12J]
gi|241663930|ref|YP_002982290.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
pickettii 12D]
gi|309781481|ref|ZP_07676217.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia sp.
5_7_47FAA]
gi|238691811|sp|B2UAR2|CLPS_RALPJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|187726694|gb|ACD27859.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
pickettii 12J]
gi|240865957|gb|ACS63618.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia
pickettii 12D]
gi|308919894|gb|EFP65555.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia sp.
5_7_47FAA]
Length = 108
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 64/96 (66%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ R ++ P +Y+VLL+ND+YTPMEFV+ +LQ +F KD ETA IML VH +G
Sbjct: 12 DAGTVLERKEQALKPPAMYKVLLLNDDYTPMEFVVMILQQYFSKDRETATQIMLTVHREG 71
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG+Y +IA KV V ++RQ +PLQC+ME+
Sbjct: 72 KGVCGLYTRDIAATKVELVSTHARQAGHPLQCVMEE 107
>gi|325981356|ref|YP_004293758.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosomonas sp.
AL212]
gi|325530875|gb|ADZ25596.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrosomonas sp.
AL212]
Length = 102
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 68/89 (76%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ K + P LY++LL+ND++TPMEFV+ VL++FF + E A IMLKVH +G+G CG+Y
Sbjct: 13 QEKVKYKPPPLYKILLLNDDFTPMEFVVEVLKSFFSMNQEQATLIMLKVHTEGVGVCGIY 72
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+IA KV QV+ +SR++Q+PL+C+ME+
Sbjct: 73 PGDIASTKVKQVIEFSRRNQHPLRCVMEE 101
>gi|304413815|ref|ZP_07395232.1| regulatory protein for ClpA substrate specificity [Candidatus
Regiella insecticola LSR1]
gi|304283535|gb|EFL91930.1| regulatory protein for ClpA substrate specificity [Candidatus
Regiella insecticola LSR1]
Length = 106
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/104 (44%), Positives = 64/104 (61%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
A D + K++ P LY+V+L ND+YTPMEFVI VLQ FF D E A I
Sbjct: 2 NDNHAGLDVEHLVNEQQIDKLQPPSLYKVILNNDDYTPMEFVIDVLQKFFSYDIELATQI 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML +H+QG CGV+ E+AE KV V Y+R++++PL C +++
Sbjct: 62 MLDIHYQGRAICGVFTAEVAETKVVLVNQYARKNEHPLLCTLKK 105
>gi|239815631|ref|YP_002944541.1| ATP-dependent Clp protease adaptor protein ClpS [Variovorax
paradoxus S110]
gi|259491251|sp|C5CLL8|CLPS_VARPS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|239802208|gb|ACS19275.1| ATP-dependent Clp protease adaptor protein ClpS [Variovorax
paradoxus S110]
Length = 119
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 26 FMADSRMNKK-GIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF 83
+ + D+ + K P++Y+V+++ND+YTPMEFVI VLQ +F
Sbjct: 4 RIPKTPSTPPAQKPAGDDGDSVVLERRPQKTAPPQMYQVVMLNDDYTPMEFVIVVLQEYF 63
Query: 84 YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
KD ETA IMLK+H G G CGVY+ ++A KVNQVM + Q +PLQC+ E
Sbjct: 64 NKDRETATQIMLKIHLDGRGVCGVYSRDLAATKVNQVMEAAHQAGHPLQCVSEP 117
>gi|120554676|ref|YP_959027.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter
aquaeolei VT8]
gi|158513045|sp|A1U1H1|CLPS_MARAV RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|120324525|gb|ABM18840.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter
aquaeolei VT8]
Length = 119
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 59/106 (55%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
+ + S ++ P YRV+L+ND+YTPM+FV+ VL FF + E A
Sbjct: 12 NQGEDEQPGRHEGVSVAPEKPALKRPARYRVVLLNDDYTPMDFVVDVLMKFFAMNEEKAT 71
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH QG CGVY +IAE K QV YS + ++PL C +E+
Sbjct: 72 QVMLLVHTQGKAVCGVYTRDIAETKAAQVNQYSSECEHPLLCEIER 117
>gi|238749793|ref|ZP_04611298.1| ATP-dependent Clp protease adapter protein clpS [Yersinia rohdei
ATCC 43380]
gi|238712448|gb|EEQ04661.1| ATP-dependent Clp protease adapter protein clpS [Yersinia rohdei
ATCC 43380]
Length = 106
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
K + + + ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GKNNDWLNFEHLVKDKHIEALKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 62 MLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105
>gi|114320604|ref|YP_742287.1| ATP-dependent Clp protease adaptor protein ClpS [Alkalilimnicola
ehrlichii MLHE-1]
gi|122311718|sp|Q0A8P0|CLPS_ALHEH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|114226998|gb|ABI56797.1| ATP-dependent Clp protease adaptor protein ClpS [Alkalilimnicola
ehrlichii MLHE-1]
Length = 106
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 68/103 (66%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
++ +V+ P L++V+++ND+YTPM+FV+ VLQ FF+ D A +M
Sbjct: 3 DKAGDWQEHGPQVEEAPPQVKRPPLFKVIILNDDYTPMDFVVEVLQKFFHMDRARATQVM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L VH +G G CGV++ ++AE KVNQV ++SRQH++PL C +++
Sbjct: 63 LHVHTRGEGVCGVFSRDVAETKVNQVNDWSRQHEHPLMCTLKE 105
>gi|254503825|ref|ZP_05115976.1| ATP-dependent Clp protease adaptor protein ClpS [Labrenzia
alexandrii DFL-11]
gi|222439896|gb|EEE46575.1| ATP-dependent Clp protease adaptor protein ClpS [Labrenzia
alexandrii DFL-11]
Length = 110
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/103 (55%), Positives = 75/103 (72%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
D R + + P LYRVLL+ND+YTPMEFVIHV+++FF K+ E A IML
Sbjct: 8 DKDGGDAGTVVVTRTKTVTKRPNLYRVLLLNDDYTPMEFVIHVVESFFQKNREEATRIML 67
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VHH G+GECG+Y YE+AE KV QVM+++R+HQ+PLQC+ME+K
Sbjct: 68 HVHHHGVGECGIYTYEVAETKVTQVMDFARRHQHPLQCVMEKK 110
>gi|254524583|ref|ZP_05136638.1| ATP-dependent Clp protease adaptor protein ClpS [Stenotrophomonas
sp. SKA14]
gi|219722174|gb|EED40699.1| ATP-dependent Clp protease adaptor protein ClpS [Stenotrophomonas
sp. SKA14]
Length = 85
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/82 (53%), Positives = 58/82 (70%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
P Y+V+L+ND+YTPM+FV+ VLQ FF D + A +ML VH +G G CGV+ E+AE
Sbjct: 3 PPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTREVAET 62
Query: 116 KVNQVMNYSRQHQYPLQCIMEQ 137
KV QV YSR +Q+PL C ME+
Sbjct: 63 KVAQVNEYSRMNQHPLLCTMEK 84
>gi|224369760|ref|YP_002603924.1| ClpS [Desulfobacterium autotrophicum HRM2]
gi|259491245|sp|C0QI24|CLPS_DESAH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|223692477|gb|ACN15760.1| ClpS [Desulfobacterium autotrophicum HRM2]
Length = 104
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 42 NCLDSEVRFSSKVRV----PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
N + R SSKV P +YRV+L ND+YT MEFV+ +L F K E A IML +
Sbjct: 4 NEPSIKQRTSSKVEKKEGYPPMYRVVLHNDDYTTMEFVVQILITVFGKSLEKASIIMLNI 63
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H QG G CG Y E+AE KVN V + +R+ +PL+ ME++
Sbjct: 64 HKQGKGICGSYTREVAETKVNTVHHLAREQGFPLKSTMEKE 104
>gi|304397051|ref|ZP_07378930.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. aB]
gi|304355200|gb|EFM19568.1| ATP-dependent Clp protease adaptor protein ClpS [Pantoea sp. aB]
Length = 106
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E + ++ P +Y+V+L ND+YTPMEFVI V+Q FF D E A +MLKVH+ G CG
Sbjct: 15 EDKVREGLKPPSMYKVILNNDDYTPMEFVIDVVQKFFSYDVERATQLMLKVHYHGKAICG 74
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
V+ E+AE K QV NY+R++ +PL C +E+
Sbjct: 75 VFTAEVAETKAAQVNNYARENHHPLLCTLEK 105
>gi|22126687|ref|NP_670110.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
KIM 10]
gi|45441053|ref|NP_992592.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Microtus str. 91001]
gi|51595733|ref|YP_069924.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
pseudotuberculosis IP 32953]
gi|108806654|ref|YP_650570.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
Antiqua]
gi|108812774|ref|YP_648541.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
Nepal516]
gi|145599600|ref|YP_001163676.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
Pestoides F]
gi|149366624|ref|ZP_01888658.1| hypothetical protein YPE_1859 [Yersinia pestis CA88-4125]
gi|153948682|ref|YP_001401572.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
pseudotuberculosis IP 31758]
gi|162418231|ref|YP_001606105.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
Angola]
gi|165924312|ref|ZP_02220144.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165938973|ref|ZP_02227526.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Orientalis str. IP275]
gi|166009809|ref|ZP_02230707.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166211395|ref|ZP_02237430.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399829|ref|ZP_02305347.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419808|ref|ZP_02311561.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167424070|ref|ZP_02315823.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167469762|ref|ZP_02334466.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
FV-1]
gi|170024918|ref|YP_001721423.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
pseudotuberculosis YPIII]
gi|186894810|ref|YP_001871922.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
pseudotuberculosis PB1/+]
gi|218928515|ref|YP_002346390.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
CO92]
gi|229841334|ref|ZP_04461493.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229843438|ref|ZP_04463584.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
biovar Orientalis str. India 195]
gi|229895811|ref|ZP_04510981.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
Pestoides A]
gi|229903187|ref|ZP_04518300.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
Nepal516]
gi|270486980|ref|ZP_06204054.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
KIM D27]
gi|294503358|ref|YP_003567420.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
Z176003]
gi|21542306|sp|Q8ZGD5|CLPS_YERPE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67460254|sp|Q66CL0|CLPS_YERPS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|122383658|sp|Q1CA97|CLPS_YERPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|122384459|sp|Q1CGD9|CLPS_YERPN RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|158514101|sp|A4TN41|CLPS_YERPP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|167008657|sp|A7FJZ4|CLPS_YERP3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238687306|sp|A9R4Y5|CLPS_YERPG RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238688568|sp|B1JRG2|CLPS_YERPY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238691444|sp|B2KA00|CLPS_YERPB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|21959704|gb|AAM86361.1|AE013884_8 hypothetical protein y2810 [Yersinia pestis KIM 10]
gi|45435912|gb|AAS61469.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
str. 91001]
gi|51589015|emb|CAH20633.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108776422|gb|ABG18941.1| hypothetical protein YPN_2613 [Yersinia pestis Nepal516]
gi|108778567|gb|ABG12625.1| hypothetical protein YPA_0657 [Yersinia pestis Antiqua]
gi|115347126|emb|CAL20019.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145211296|gb|ABP40703.1| hypothetical protein YPDSF_2328 [Yersinia pestis Pestoides F]
gi|149290998|gb|EDM41073.1| hypothetical protein YPE_1859 [Yersinia pestis CA88-4125]
gi|152960177|gb|ABS47638.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
pseudotuberculosis IP 31758]
gi|162351046|gb|ABX84994.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
Angola]
gi|165913120|gb|EDR31744.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Orientalis str. IP275]
gi|165923372|gb|EDR40504.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165991205|gb|EDR43506.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166207166|gb|EDR51646.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166962549|gb|EDR58570.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167050537|gb|EDR61945.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167056919|gb|EDR66682.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|169751452|gb|ACA68970.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
pseudotuberculosis YPIII]
gi|186697836|gb|ACC88465.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia
pseudotuberculosis PB1/+]
gi|229678957|gb|EEO75060.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
Nepal516]
gi|229689785|gb|EEO81846.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
biovar Orientalis str. India 195]
gi|229697700|gb|EEO87747.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229700734|gb|EEO88763.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
Pestoides A]
gi|262361398|gb|ACY58119.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
D106004]
gi|262365065|gb|ACY61622.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
D182038]
gi|270335484|gb|EFA46261.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
KIM D27]
gi|294353817|gb|ADE64158.1| ATP-dependent Clp protease adaptor protein ClpS [Yersinia pestis
Z176003]
gi|320015777|gb|ADV99348.1| regulatory protein for ClpA substrate specificity [Yersinia pestis
biovar Medievalis str. Harbin 35]
Length = 106
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
K + + + ++ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GKNNDWLNFEHLVKDKQIEALQPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 62 MLNVHYQGKAICGVFTAEVAETKVAHVNQYARENEHPLLCTLEK 105
>gi|217969671|ref|YP_002354905.1| ATP-dependent Clp protease adaptor protein ClpS [Thauera sp. MZ1T]
gi|217506998|gb|ACK54009.1| ATP-dependent Clp protease adaptor protein ClpS [Thauera sp. MZ1T]
Length = 102
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 43 CLDSEVRFS-SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D + ++ R P L++V+L+ND+YTPM+FVI VLQ +F D E A +ML+VH +G
Sbjct: 6 QDDLVLEAKRTRTRPPPLFKVMLLNDDYTPMDFVIVVLQKYFGMDRERATRVMLQVHREG 65
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CGV+ +IA KV QV +++RQHQ+PL C+ME+
Sbjct: 66 MGVCGVFPRDIATTKVEQVTSFARQHQHPLACVMEE 101
>gi|157369916|ref|YP_001477905.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia
proteamaculans 568]
gi|270261165|ref|ZP_06189438.1| ATP-dependent Clp protease adapter protein ClpS [Serratia odorifera
4Rx13]
gi|293396848|ref|ZP_06641122.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia odorifera
DSM 4582]
gi|167008656|sp|A8GCD7|CLPS_SERP5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|157321680|gb|ABV40777.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia
proteamaculans 568]
gi|270044649|gb|EFA17740.1| ATP-dependent Clp protease adapter protein ClpS [Serratia odorifera
4Rx13]
gi|291420319|gb|EFE93574.1| ATP-dependent Clp protease adaptor protein ClpS [Serratia odorifera
DSM 4582]
Length = 106
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ +E + V+ P +Y+V+L ND+YTPMEFVI VLQ FF D E A +
Sbjct: 2 GNNNDWLNFEHLAEEKQIDAVKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH+QG CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 62 MLTVHYQGKAICGVFTAEVAETKVVHVNRYARENEHPLLCTLEK 105
>gi|149198609|ref|ZP_01875653.1| ATP-dependent Clp protease adaptor protein ClpS [Lentisphaera
araneosa HTCC2155]
gi|149138324|gb|EDM26733.1| ATP-dependent Clp protease adaptor protein ClpS [Lentisphaera
araneosa HTCC2155]
Length = 103
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 64/96 (66%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
D+ + KV+ P ++V+L ND+YTPM+FV++++ + F+K + A +ML VH +G
Sbjct: 8 EGDAALLEKRKVKRPSRFKVILHNDDYTPMDFVVYLIMSVFHKTEDEAAQLMLTVHVKGK 67
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIAE KV++ M+ ++Q +PL C M+++
Sbjct: 68 AICGIYPKEIAENKVDKAMSMAKQEGHPLLCTMQKE 103
>gi|270159871|ref|ZP_06188527.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
longbeachae D-4968]
gi|289165375|ref|YP_003455513.1| regulatory protein for ClpA substrate specificity [Legionella
longbeachae NSW150]
gi|269988210|gb|EEZ94465.1| ATP-dependent Clp protease adaptor protein ClpS [Legionella
longbeachae D-4968]
gi|288858548|emb|CBJ12429.1| regulatory protein for ClpA substrate specificity [Legionella
longbeachae NSW150]
Length = 107
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 73/107 (68%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ + + E +E SS+++VP+ Y+V+L+ND+YTPM+FV+ VL++FF+ E A
Sbjct: 1 MSGQNLEEIVRHRIAEPEMSSEIKVPRKYKVVLLNDDYTPMDFVVDVLKHFFHLSEEMAV 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML+VH QG G CGV+ +IAE KV V Y+R++Q+PL ME +
Sbjct: 61 QIMLQVHFQGKGVCGVFTRDIAETKVALVNEYARRNQHPLLSSMEPE 107
>gi|116328081|ref|YP_797801.1| hypothetical protein LBL_1378 [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116331466|ref|YP_801184.1| hypothetical protein LBJ_1906 [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|122280789|sp|Q04RP4|CLPS_LEPBJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|122284127|sp|Q051X7|CLPS_LEPBL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|116120825|gb|ABJ78868.1| conserved hypothetical protein [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116125155|gb|ABJ76426.1| conserved hypothetical protein [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 108
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 63/104 (60%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
I FD + + K++ P YRV+++ND++TPMEFV+ +LQ F++ ++ IM
Sbjct: 2 SDIFRFDTEEQTLTKEKVKLKRPSKYRVIILNDDFTPMEFVVWILQFVFHRSRAQSQQIM 61
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
LK H G CGVY++++A KV QV + QH YPL C ME +
Sbjct: 62 LKAHITGKALCGVYSHDVARTKVIQVQQLAEQHGYPLHCTMEVE 105
>gi|302879452|ref|YP_003848016.1| ATP-dependent Clp protease adaptor protein ClpS [Gallionella
capsiferriformans ES-2]
gi|302582241|gb|ADL56252.1| ATP-dependent Clp protease adaptor protein ClpS [Gallionella
capsiferriformans ES-2]
Length = 102
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 60/84 (71%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ P +Y+V+L ND+YT MEFVI VLQ FF ++E A+ +ML++H+ G CGVY ++A
Sbjct: 18 TKPPGMYKVVLYNDDYTTMEFVIDVLQRFFAINNERAQQLMLQIHNNGSATCGVYTRDVA 77
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
E KV QV Y++Q+ +PL+C E+
Sbjct: 78 ETKVAQVTEYAQQNGHPLRCGTEE 101
>gi|186475335|ref|YP_001856805.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
phymatum STM815]
gi|238691266|sp|B2JDY3|CLPS_BURP8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|184191794|gb|ACC69759.1| ATP-dependent Clp protease adaptor protein ClpS [Burkholderia
phymatum STM815]
Length = 104
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 8/111 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
MA + R K++ P +++V+L+ND++TPMEFV+ ++Q +F KD
Sbjct: 1 MAIIPDKQDN--------TVLERQEQKLKPPAMFKVVLLNDDFTPMEFVVMIVQEYFNKD 52
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ETA IMLKVH +G G CGVY +IA KV QV+ ++RQ +PLQC+ME+
Sbjct: 53 RETATQIMLKVHREGRGVCGVYTRDIASTKVEQVVTHARQAGHPLQCVMEE 103
>gi|28198572|ref|NP_778886.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
Temecula1]
gi|71274782|ref|ZP_00651070.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
Dixon]
gi|71897611|ref|ZP_00679856.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
Ann-1]
gi|71901078|ref|ZP_00683187.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
Ann-1]
gi|170729972|ref|YP_001775405.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
M12]
gi|182681253|ref|YP_001829413.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
M23]
gi|32130316|sp|Q87DL8|CLPS_XYLFT RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238687979|sp|B0U6Q9|CLPS_XYLFM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238691117|sp|B2I9Y0|CLPS_XYLF2 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|28056656|gb|AAO28535.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|71164514|gb|EAO14228.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
Dixon]
gi|71729160|gb|EAO31282.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
Ann-1]
gi|71732514|gb|EAO34567.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
Ann-1]
gi|167964765|gb|ACA11775.1| conserved hypothetical protein [Xylella fastidiosa M12]
gi|182631363|gb|ACB92139.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
M23]
gi|307579703|gb|ADN63672.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 106
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M++K + + DN L E ++KV P Y+VLL+ND+YTPM+FVI VLQ FF D + A
Sbjct: 1 MSQKTVHDQDNALLLET-GNTKVAPPPRYQVLLLNDDYTPMDFVIVVLQQFFAMDLKKAT 59
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH +G G CG Y E+AE KV QV +SR HQ+PL C M+Q
Sbjct: 60 QVMLHVHTRGRGVCGFYTREVAESKVAQVNEFSRIHQHPLLCTMKQ 105
>gi|160898941|ref|YP_001564523.1| ATP-dependent Clp protease adaptor protein ClpS [Delftia
acidovorans SPH-1]
gi|160364525|gb|ABX36138.1| ATP-dependent Clp protease adaptor protein ClpS [Delftia
acidovorans SPH-1]
Length = 125
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 21 LMSFIFMADSRMN-----KKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEF 74
+ IFMA + D+ + +V+ P++Y+V+++ND++TPMEF
Sbjct: 1 MARMIFMATQPPSIPPAIPTVRPVSDDDGAVVLERRRQRVQPPQMYQVVMLNDDFTPMEF 60
Query: 75 VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
VI VLQ F KD ETA IMLK+H G G CGVY+ ++A KV QV+ +++ +PLQ +
Sbjct: 61 VIIVLQELFGKDRETATQIMLKIHLDGRGVCGVYSRDVAATKVEQVLQAAQKAGHPLQAM 120
Query: 135 MEQ 137
E
Sbjct: 121 FEP 123
>gi|71278979|ref|YP_269595.1| ATP-dependent Clp protease adaptor protein ClpS [Colwellia
psychrerythraea 34H]
gi|123632117|sp|Q480C4|CLPS_COLP3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|71144719|gb|AAZ25192.1| ATP-dependent Clp protease adaptor protein ClpS [Colwellia
psychrerythraea 34H]
Length = 106
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 62/98 (63%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
FD E ++ P Y V L+ND+YTPM+FV+ VL NFF K E A IML +H+
Sbjct: 8 FDTEGIVEESVKEQIEEPAKYYVFLLNDDYTPMDFVVDVLCNFFNKSEEQATDIMLTIHY 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G CG Y EIAE KV QV+ Y+ ++Q+PL+C+M +
Sbjct: 68 KGKALCGTYTAEIAETKVEQVVQYAFENQHPLKCVMTK 105
>gi|56477975|ref|YP_159564.1| ATP-dependent Clp protease adaptor protein ClpS [Aromatoleum
aromaticum EbN1]
gi|67460190|sp|Q5P201|CLPS_AZOSE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|56314018|emb|CAI08663.1| ATP-dependent Clp protease adaptor protein ClpS [Aromatoleum
aromaticum EbN1]
Length = 102
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 66/87 (75%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
++ + P LY+VLL+ND++TPM+FVI VLQ FF D E A +ML+VH +G+G CGV+
Sbjct: 15 QTRTKPPPLYKVLLLNDDFTPMDFVIVVLQKFFGMDRERATRVMLQVHREGMGVCGVFPK 74
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
++A KV QV+ ++RQHQ+PL C+ME+
Sbjct: 75 DVAATKVEQVVAFARQHQHPLACVMEE 101
>gi|126667265|ref|ZP_01738238.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter sp.
ELB17]
gi|126628210|gb|EAZ98834.1| ATP-dependent Clp protease adaptor protein ClpS [Marinobacter sp.
ELB17]
Length = 117
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ + L ++ P +RV+L+ND+YTPM+FV+ VL FF + E A +M
Sbjct: 14 ESEPGRHDQLSLAPE-KPALKRPAQFRVILLNDDYTPMDFVVEVLTTFFGMNEEKATQVM 72
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L VH QG CGVY+ +IAE K QV +YS + +PL C +E+
Sbjct: 73 LLVHTQGKAVCGVYSRDIAETKAAQVNHYSSECDHPLLCEIER 115
>gi|67460273|sp|Q6FZM5|CLPS_BARQU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
Length = 110
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 54/108 (50%), Positives = 71/108 (65%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
K E + + SK++ PKLYRV L ND+YTPM+FV+ VL+NFF K E
Sbjct: 1 MQNEKGKNWDESRHDAVIIPKMRSKLQKPKLYRVFLFNDDYTPMDFVVFVLKNFFKKSFE 60
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
A IML VH G+GECG+Y+YE+AEMKV QV + Q+++PLQC+ME
Sbjct: 61 EATHIMLNVHQNGVGECGIYSYEVAEMKVIQVRECAHQNEHPLQCVME 108
>gi|326405326|ref|YP_004285408.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
multivorum AIU301]
gi|325052188|dbj|BAJ82526.1| ATP-dependent Clp protease adaptor protein ClpS [Acidiphilium
multivorum AIU301]
Length = 106
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 63/91 (69%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
+ ++ + P LYRV++ ND+YTPMEFV+ L F K + A I L++H +G+G CG
Sbjct: 15 ATQARARAKRPPLYRVMMFNDDYTPMEFVVATLVGLFGKTTDEAGRIALRIHRRGVGVCG 74
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
++ YEIAE K+ QV+ +R++Q+PLQC++E
Sbjct: 75 IFTYEIAETKMIQVLELARENQHPLQCMIEP 105
>gi|304311206|ref|YP_003810804.1| ATP-dependent Clp protease adaptor protein [gamma proteobacterium
HdN1]
gi|301796939|emb|CBL45152.1| ATP-dependent Clp protease adaptor protein [gamma proteobacterium
HdN1]
Length = 120
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
+M + + D VR +S +V P +++VL++ND+YTPMEFV+ VLQ FF + E
Sbjct: 12 QMMANRPSVTEAEGDLAVREASAEVAPPPMFQVLMLNDDYTPMEFVVEVLQRFFGMNREA 71
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A +ML VH +G CGV+ ++AE K QVM Y+R++Q+PL C +E+
Sbjct: 72 ATQVMLIVHTKGQASCGVFTKDVAETKAMQVMKYARENQHPLMCRIER 119
>gi|319408390|emb|CBI82045.1| Clp protease adaptor protein [Bartonella schoenbuchensis R1]
Length = 119
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 55/108 (50%), Positives = 72/108 (66%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
KG +E + K + PKLYRVLL+ND+YTPM+FV+ +L++FF K E
Sbjct: 12 MQNEKGKGWSEDKYDTIVIPQVKPKFQKPKLYRVLLLNDDYTPMDFVVFILESFFKKSFE 71
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
IML VH G+GECGVY YE+AEMKV QVM +RQ+++PLQC+ME
Sbjct: 72 ETTRIMLNVHQNGVGECGVYTYEVAEMKVVQVMECARQNEHPLQCVME 119
>gi|290473958|ref|YP_003466832.1| modulator of ClpA substrate specificity [Xenorhabdus bovienii
SS-2004]
gi|289173265|emb|CBJ80040.1| modulator of ClpA substrate specificity [Xenorhabdus bovienii
SS-2004]
Length = 106
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E + ++ P +Y+V+L ND+YTPMEFV+ VL+ FF D E A +ML +H+QG C
Sbjct: 14 IEDKTEQTLQPPSMYKVILNNDDYTPMEFVVDVLRKFFSYDVERATQLMLDIHYQGKAIC 73
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G+Y E+AE K QV Y+++H++PL C +E+
Sbjct: 74 GIYTAEVAETKAAQVNMYAKEHEHPLLCSLEK 105
>gi|90408367|ref|ZP_01216530.1| ATP-dependent Clp protease adaptor protein ClpS [Psychromonas sp.
CNPT3]
gi|90310530|gb|EAS38652.1| ATP-dependent Clp protease adaptor protein ClpS [Psychromonas sp.
CNPT3]
Length = 108
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 48/106 (45%), Positives = 70/106 (66%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ K + N + +K++ P +Y VLL ND+YTPM+FVI VLQ FF + A
Sbjct: 1 MSDKNSVQTGNSPAVLDKLETKLQPPAMYNVLLHNDDYTPMDFVIDVLQRFFQLSTDKAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IML VH+ IG CG ++ EIAE KV QVMNY++++++PL+C M++
Sbjct: 61 QIMLDVHYHDIGICGTFSAEIAETKVMQVMNYAQENEHPLRCSMQK 106
>gi|145589929|ref|YP_001156526.1| ATP-dependent Clp protease adaptor protein ClpS [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048335|gb|ABP34962.1| ATP-dependent Clp protease adaptor protein ClpS [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 118
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/110 (41%), Positives = 68/110 (61%)
Query: 28 ADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ + + +++ P +Y+VLL+ND+YTPMEFV+ V+Q +F KDH
Sbjct: 8 PKNPTTGIPANPYAEDTILLEKQVEQIKAPSMYKVLLLNDDYTPMEFVVMVIQEYFNKDH 67
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ETA IML+VH G G CGV+ ++A KV+QV+ SR+ +PLQC ME+
Sbjct: 68 ETATRIMLQVHLVGKGICGVFTRDVAATKVHQVIELSREAGHPLQCTMEE 117
>gi|152993643|ref|YP_001359364.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfurovum sp.
NBC37-1]
gi|151425504|dbj|BAF73007.1| ATP-dependent Clp protease, adaptor protein ClpS [Sulfurovum sp.
NBC37-1]
Length = 99
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 62/97 (63%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ E ++ P++Y+VLL ND+YT M+FV+ VL + F+K E A IML++H +G
Sbjct: 2 PKFEVESDVELELWEPQMYKVLLHNDDYTSMDFVVEVLTSIFHKTQEQAVQIMLQIHEKG 61
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CGVY++EIA+ K QV ++++++PL +E+
Sbjct: 62 KAICGVYSFEIAQTKAEQVKQLAKKNEFPLLATIEED 98
>gi|113869007|ref|YP_727496.1| ATP-dependent Clp protease adaptor protein ClpS [Ralstonia eutropha
H16]
gi|194290613|ref|YP_002006520.1| ATP-dependent clp protease adaptor protein clps [Cupriavidus
taiwanensis LMG 19424]
gi|123133653|sp|Q0K793|CLPS_RALEH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238692769|sp|B3R6C0|CLPS_CUPTR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|113527783|emb|CAJ94128.1| ATP-dependent Clp protease adaptor protein [Ralstonia eutropha H16]
gi|193224448|emb|CAQ70459.1| ATP-dependent Clp protease substrate specificity regulator
[Cupriavidus taiwanensis LMG 19424]
Length = 108
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 63/96 (65%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
R ++ P +++V+L+ND+YTPMEFV+ +LQ +F +D ETA IML VH +G
Sbjct: 12 EAGTILERKEQALKPPAMFKVVLLNDDYTPMEFVVMILQQYFSRDRETATQIMLTVHREG 71
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG+Y +IA KV V ++RQ +PLQC+ME+
Sbjct: 72 KGVCGIYTRDIAATKVELVSTHARQAGHPLQCVMEE 107
>gi|30249694|ref|NP_841764.1| hypothetical protein NE1732 [Nitrosomonas europaea ATCC 19718]
gi|37076996|sp|Q82TY3|CLPS_NITEU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|30180731|emb|CAD85643.1| DUF174 [Nitrosomonas europaea ATCC 19718]
Length = 103
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 68/94 (72%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+ +++ P LY+V+L+ND++TPM+FV+ VL++FF + E A +MLK+H +G G
Sbjct: 10 SIIEKGRARLNPPPLYKVILINDDFTPMDFVVKVLRHFFLMNEEMATKVMLKIHIEGAGI 69
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y +IA KV QV ++SRQ+Q+PL C+ME++
Sbjct: 70 CGIYPSDIAVTKVQQVNDFSRQNQHPLMCVMEKE 103
>gi|121611395|ref|YP_999202.1| ATP-dependent Clp protease adaptor protein ClpS [Verminephrobacter
eiseniae EF01-2]
gi|158514006|sp|A1WRC7|CLPS_VEREI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|121556035|gb|ABM60184.1| ATP-dependent Clp protease adaptor protein ClpS [Verminephrobacter
eiseniae EF01-2]
Length = 119
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 34 KKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
D+ + K P++Y+V+++ND+YTPMEFVI VLQ FF KD ETA
Sbjct: 13 PATRPAPDDGGAVVLERRPEKTPPPQMYQVVMLNDDYTPMEFVIVVLQEFFSKDRETATR 72
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IMLK+H G G CGVY++++A KV+QV++ + + +PLQC+ E
Sbjct: 73 IMLKIHLDGKGICGVYSHDVAATKVDQVLDAALKAGHPLQCVSEP 117
>gi|238897684|ref|YP_002923363.1| regulatory protein for ClpA substrate specificity [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465441|gb|ACQ67215.1| regulatory protein for ClpA substrate specificity [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 105
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V+ P +Y+V+L ND+YTPMEFV+ VLQNFF + E A +MLKVH+QG CG + E+A
Sbjct: 21 VKPPDMYKVILNNDDYTPMEFVVDVLQNFFSYNLEQATALMLKVHYQGKAICGTFTAEVA 80
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
E KV V Y+R++++P C +E+
Sbjct: 81 ETKVASVNQYARENEHPFLCTLEK 104
>gi|289805673|ref|ZP_06536302.1| ATP-dependent Clp protease adaptor protein ClpS [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 107
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 60/94 (63%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D E ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML VH+Q
Sbjct: 9 DFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
G CGV+ E+AE KV V Y+R++++PL C
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCT 102
>gi|312881479|ref|ZP_07741271.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309370845|gb|EFP98305.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 106
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 42/102 (41%), Positives = 62/102 (60%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ +KV P +Y V+L ND+YTPMEFVI +L+ FF D + A +ML
Sbjct: 4 DFEWVSPDHELLELEKTKVTPPSMYNVILNNDDYTPMEFVIEILERFFSMDIDKATQVML 63
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
KVH++G CG + E+AE KV QV +S+++++PL C ME+
Sbjct: 64 KVHYEGKAICGTFTAEVAETKVAQVTLHSKENEHPLLCTMER 105
>gi|15838043|ref|NP_298731.1| ATP-dependent Clp protease adaptor protein ClpS [Xylella fastidiosa
9a5c]
gi|12230825|sp|Q9PDD7|CLPS_XYLFA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|9106460|gb|AAF84251.1|AE003974_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 106
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M++K + + DN L E ++KV P Y+VLL+ND+YTPM+FVI VLQ FF D + A
Sbjct: 1 MSQKTVHDQDNALLLET-GNTKVAPPPRYQVLLLNDDYTPMDFVIVVLQQFFAMDLKKAT 59
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH +G G CG Y E+AE KV QV +SR HQ+PL C M+Q
Sbjct: 60 QVMLHVHTRGCGVCGFYTREVAESKVAQVNEFSRIHQHPLLCTMKQ 105
>gi|124267648|ref|YP_001021652.1| hypothetical protein Mpe_A2462 [Methylibium petroleiphilum PM1]
gi|124260423|gb|ABM95417.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 118
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 67/104 (64%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
+ R S++V P++Y+V+L+ND+YTPMEFV+ VLQ FF +D ETA
Sbjct: 13 RPVTKPDDGQGAVVAERQSARVEPPRMYQVVLLNDDYTPMEFVVMVLQEFFQRDIETATQ 72
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
IMLK+HH+G G CGVY ++A KV V+ +++ +PLQC ME
Sbjct: 73 IMLKIHHEGRGVCGVYTKDVASTKVESVLAAAKRSGHPLQCTME 116
>gi|24214803|ref|NP_712284.1| ATP-dependent Clp protease adaptor protein ClpS [Leptospira
interrogans serovar Lai str. 56601]
gi|45657680|ref|YP_001766.1| hypothetical protein LIC11815 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|37077224|sp|Q8F4D8|CLPS_LEPIN RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67460336|sp|Q72RD1|CLPS_LEPIC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|24195812|gb|AAN49302.1| ATP-dependent Clp protease adaptor protein ClpS [Leptospira
interrogans serovar Lai str. 56601]
gi|45600920|gb|AAS70403.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 111
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 41/101 (40%), Positives = 61/101 (60%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
I FD + + K++ P YRV+++ND++TPMEFV+ +LQ F++ ++ IM
Sbjct: 2 SDIFRFDTEEQTLTKEKIKLKKPSKYRVIILNDDFTPMEFVVWILQMVFHRSRAESQQIM 61
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
LK H G CGVY++++A KV QV + QH YPL C M
Sbjct: 62 LKAHITGKALCGVYSHDVARTKVAQVQQLAEQHGYPLHCTM 102
>gi|89092941|ref|ZP_01165893.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanospirillum
sp. MED92]
gi|89082966|gb|EAR62186.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanospirillum
sp. MED92]
Length = 120
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 33 NKKGIAEFDNCLDSEVR-FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
N+ EFD+ +++ P +YRV+L+ND+YTPM+FV+ VL FF D E A
Sbjct: 14 NEDEHEEFDHDHGLATEEAKPELKKPSMYRVVLMNDDYTPMDFVVAVLMMFFSMDQEKAT 73
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VH QG G CG++ ++A+ K V Y+R + +PL C +E+
Sbjct: 74 QVMLAVHTQGKGVCGIFTRDVADTKAAIVNQYARDNSHPLLCEVEK 119
>gi|308272838|emb|CBX29442.1| ATP-dependent Clp protease adapter protein clpS [uncultured
Desulfobacterium sp.]
Length = 105
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M E + + SE R ++ P +++VLL ND+YT M+FV+ +L FYK E A
Sbjct: 1 MGNNISPEIEESITSETRKE--IKEPSMFKVLLHNDDYTTMDFVVEILMRVFYKSIEEAI 58
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IML VH QG+G CG+Y YEIAE K+N V + SR +PL+C +E+
Sbjct: 59 QIMLNVHRQGMGVCGLYTYEIAETKMNSVHSLSRDRGFPLRCSIEK 104
>gi|241763390|ref|ZP_04761445.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax
delafieldii 2AN]
gi|241367432|gb|EER61743.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax
delafieldii 2AN]
Length = 122
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFS-SKVRVPKLYRVLLVNDNYTPMEFVIH 77
+ M+ + D+ + KVR P++Y+V+++ND+YTPMEFVI
Sbjct: 1 MNFMATKPPSTPTAPPSVRPAQDDGGSVVLERRAQKVRPPQMYQVVMLNDDYTPMEFVIV 60
Query: 78 VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VLQ FF KD ETA IMLK+H G G CGVY+ ++A KV+QV+ + + +PLQC+ E
Sbjct: 61 VLQEFFNKDRETATQIMLKIHLDGKGICGVYSRDVAATKVDQVLEAALKAGHPLQCVSEP 120
>gi|297570438|ref|YP_003691782.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfurivibrio
alkaliphilus AHT2]
gi|296926353|gb|ADH87163.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfurivibrio
alkaliphilus AHT2]
Length = 105
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 67/104 (64%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+++ LD+ R ++R P Y+VLL ND+YT M+FV+ VL+ F D ++A IM
Sbjct: 2 SNMSQDQTGLDAVTREEQELRQPPRYKVLLHNDDYTTMDFVVTVLETVFKHDTDSAHRIM 61
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ VH +G+G GVY ++AE K V N +R+H+YPL+C +E++
Sbjct: 62 MSVHKEGVGVAGVYPRDVAETKSAMVHNLARKHEYPLKCSLERE 105
>gi|114778159|ref|ZP_01453046.1| hypothetical protein SPV1_00837 [Mariprofundus ferrooxydans PV-1]
gi|114551577|gb|EAU54131.1| hypothetical protein SPV1_00837 [Mariprofundus ferrooxydans PV-1]
Length = 112
Score = 129 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 36 GIAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
I D+ + E +++ P ++R+L++ND++TPM+FV+ VL FF+K TA +M
Sbjct: 3 EITTPDSVRNPETETAEPQLQPPPMFRILMLNDDFTPMDFVVDVLIRFFHKSEATANQLM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L++H +G CG+Y +IAE K+ QV SR +PL+CIME+
Sbjct: 63 LQIHLEGRAMCGIYPRDIAETKLQQVEAASRTSGHPLRCIMEKD 106
>gi|94987059|ref|YP_594992.1| hypothetical protein LI0617 [Lawsonia intracellularis PHE/MN1-00]
gi|229889821|sp|Q1MQQ6|CLPS_LAWIP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|94731308|emb|CAJ54671.1| uncharacterized conserved protein [Lawsonia intracellularis
PHE/MN1-00]
Length = 109
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 62/106 (58%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M + + E+ K+R PK+Y+VLL NDNYT MEFV+ +L F K E A
Sbjct: 1 MTQSSYNPIEQEGSPELLLQEKIRRPKMYQVLLHNDNYTTMEFVVSILMKIFRKTMEQAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IML VH +GIG GVY E+AE KVN +R+ +PL+C +++
Sbjct: 61 SIMLSVHRKGIGVAGVYTRELAETKVNTTHMLAREAGFPLRCTLQE 106
>gi|152990128|ref|YP_001355850.1| ATP-dependent Clp protease, adaptor protein ClpS [Nitratiruptor sp.
SB155-2]
gi|151421989|dbj|BAF69493.1| ATP-dependent Clp protease, adaptor protein ClpS [Nitratiruptor sp.
SB155-2]
Length = 97
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 64/96 (66%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
E + K+ PK Y+V L+ND+YT M+FV+ +L + F K +E A IML +H QG
Sbjct: 2 GEKVETKEVVKLEEPKKYKVFLLNDDYTTMDFVVDILCDIFDKSYEEAVNIMLTIHRQGK 61
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G CG+Y YEIAE K++QV +R H++PL+ +ME++
Sbjct: 62 GLCGIYTYEIAETKIDQVHRLARAHEFPLKAVMEEE 97
>gi|222111090|ref|YP_002553354.1| ATP-dependent clp protease adaptor protein clps [Acidovorax ebreus
TPSY]
gi|221730534|gb|ACM33354.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax ebreus
TPSY]
Length = 122
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIH 77
+ M+ + + +D + + K + P++Y+V+++ND+YTPMEFV+
Sbjct: 1 MKFMATTPPIPAPVPAPTPPSWDEGGSVVLERRTQKTQPPQMYQVVMLNDDYTPMEFVVV 60
Query: 78 VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VLQ FF KD E A IMLK+H G G CGVY ++A KV+QV+ + + +PLQC+ E
Sbjct: 61 VLQEFFNKDREAATQIMLKIHLDGKGVCGVYTRDVAATKVDQVLEAAHKAGHPLQCLSEP 120
>gi|319763343|ref|YP_004127280.1| ATP-dependent clp protease adaptor protein clps [Alicycliphilus
denitrificans BC]
gi|317117904|gb|ADV00393.1| ATP-dependent Clp protease adaptor protein ClpS [Alicycliphilus
denitrificans BC]
Length = 120
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 38 AEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
D + + + K + P++Y+V+++ND+YTPMEFV+ VLQ FF KD E A IMLK
Sbjct: 18 PSRDEGGSAVLERRTQKTKPPQMYQVVMLNDDYTPMEFVVVVLQEFFNKDREAATQIMLK 77
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+H G G CGVY ++A KV QV++ + + +PLQC+ E
Sbjct: 78 IHLDGKGVCGVYTRDVAATKVEQVLDAAHRAGHPLQCVSEP 118
>gi|27065491|pdb|1LZW|A Chain A, Structural Basis Of Clps-Mediated Switch In Clpa Substrate
Recognition
gi|27065646|pdb|1MG9|A Chain A, The Structural Basis Of Clps-Mediated Switch In Clpa
Substrate Recognition
Length = 106
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 64/97 (65%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D +E + ++ P +Y+V+LVND+YTPMEFVI VLQ FF D E A +ML V +Q
Sbjct: 9 DFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVAYQ 68
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ E+AE KV V Y+R++++PL C +E+
Sbjct: 69 GKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEK 105
>gi|320335153|ref|YP_004171864.1| ATP-dependent Clp protease adapter protein clpS [Deinococcus
maricopensis DSM 21211]
gi|319756442|gb|ADV68199.1| ATP-dependent Clp protease adapter protein clpS [Deinococcus
maricopensis DSM 21211]
Length = 114
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/99 (43%), Positives = 63/99 (63%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D+ +++ ++ P+ Y VLL+ND+YTPM+FV++VL++ F +D A IML VHH
Sbjct: 8 PDSGAGTQLAQRPRLARPRRYTVLLLNDDYTPMDFVVYVLEHHFGRDEPDATRIMLAVHH 67
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
QG G GVY E+AE KV QV +R YPL+ + E +
Sbjct: 68 QGRGVAGVYTREVAETKVAQVTRLARAQGYPLELLAEPE 106
>gi|319783684|ref|YP_004143160.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317169572|gb|ADV13110.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 122
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/82 (65%), Positives = 71/82 (86%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
P LYRVL++ND+YTPMEFV+HVL+ FF KD E A IML VH+ G+GECGVY +E+AE K
Sbjct: 41 PSLYRVLILNDDYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYTFEVAETK 100
Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
V+QVM+++RQ+Q+PLQC+ME+K
Sbjct: 101 VSQVMDFARQNQHPLQCVMEKK 122
>gi|118594453|ref|ZP_01551800.1| ATP-dependent Clp protease adaptor protein ClpS [Methylophilales
bacterium HTCC2181]
gi|118440231|gb|EAV46858.1| ATP-dependent Clp protease adaptor protein ClpS [Methylophilales
bacterium HTCC2181]
Length = 103
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/102 (46%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 37 IAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
++E ++ D + +K ++P LY+V+++ND+YTPMEFV+ +Q F K H+ A IML
Sbjct: 1 MSEINHSDDVKTSPNRTKPKLPSLYKVIILNDDYTPMEFVVFSIQKVFQKSHDEATRIML 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
K+H +GIG CG++ EIAE K+ QV+N +++HQ+PLQCI+E+
Sbjct: 61 KIHTEGIGVCGMFPLEIAETKMKQVLNLAKEHQHPLQCIIEK 102
>gi|308049699|ref|YP_003913265.1| ATP-dependent Clp protease adaptor protein ClpS [Ferrimonas
balearica DSM 9799]
gi|307631889|gb|ADN76191.1| ATP-dependent Clp protease adaptor protein ClpS [Ferrimonas
balearica DSM 9799]
Length = 104
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 41 DNCLDSEVRFSSK---VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
D LD V + V P LY+V+L ND+YTPMEFV+ VL FF E A +ML V
Sbjct: 4 DTELDHVVEHEKQSQAVEPPPLYKVVLNNDDYTPMEFVVEVLTKFFALTQEQATEVMLTV 63
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H++G G CGV+ Y++AE K QV YSR+H++PL C E+
Sbjct: 64 HYKGKGVCGVFTYDVAETKAAQVNRYSREHEHPLLCSTEK 103
>gi|284007607|emb|CBA73211.1| ATP-dependent Clp protease adaptor protein [Arsenophonus nasoniae]
Length = 89
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 42/87 (48%), Positives = 59/87 (67%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
++ P +Y+V+L ND++TPM+FV+ VL+ +F D E A IML VH G G CGVY
Sbjct: 2 EHALQPPSMYKVILNNDDFTPMDFVVQVLKKYFSFDEEQATQIMLDVHFHGKGICGVYTA 61
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E+AE K QV Y+R+H+YPL C +E+
Sbjct: 62 EVAETKAAQVNIYAREHEYPLLCTIEE 88
>gi|330825577|ref|YP_004388880.1| ATP-dependent Clp protease adapter protein clpS [Alicycliphilus
denitrificans K601]
gi|329310949|gb|AEB85364.1| ATP-dependent Clp protease adapter protein clpS [Alicycliphilus
denitrificans K601]
Length = 120
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 64/98 (65%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+ R + K + P++Y+V+++ND+YTPMEFV+ VLQ FF KD E A IMLK+H
Sbjct: 21 DEGGSAVLERRTQKTKPPQMYQVVMLNDDYTPMEFVVVVLQEFFNKDREAATQIMLKIHL 80
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G G CGVY ++A KV QV++ + + +PLQC+ E
Sbjct: 81 DGKGVCGVYTRDVAATKVEQVLDAAHRAGHPLQCVSEP 118
>gi|262198176|ref|YP_003269385.1| ATP-dependent Clp protease adaptor protein ClpS [Haliangium
ochraceum DSM 14365]
gi|262081523|gb|ACY17492.1| ATP-dependent Clp protease adaptor protein ClpS [Haliangium
ochraceum DSM 14365]
Length = 116
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 62/109 (56%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
S + K ++ ++ + P LY+VLL ND+YT EFV+ VLQ+ F +
Sbjct: 6 SSHDSGKKRPGTKEERGVAIKERTRTKKPPLYKVLLHNDDYTTKEFVVWVLQSIFQRSES 65
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A IM+ VH+ G+G G+Y E+AE K+ + N ++ H+YPLQC ME
Sbjct: 66 EAVRIMMHVHNTGVGIAGIYTLEVAETKMTKTTNLAQAHEYPLQCSMEP 114
>gi|261856347|ref|YP_003263630.1| ATP-dependent Clp protease adaptor protein ClpS [Halothiobacillus
neapolitanus c2]
gi|261836816|gb|ACX96583.1| ATP-dependent Clp protease adaptor protein ClpS [Halothiobacillus
neapolitanus c2]
Length = 104
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 64/96 (66%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D+E + V P +Y+V+L+ND++TPM+FVI +L FY E A+ +ML+VHH+G
Sbjct: 6 TTTDTESIPEAIVAEPPMYQVILLNDDFTPMDFVIRILVELFYLSTEQAERVMLEVHHKG 65
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG++ EIAE +V QV +RQ+ +PL C+ME
Sbjct: 66 RGVCGIFTREIAETRVAQVNQVARQNDHPLLCVMEP 101
>gi|149919976|ref|ZP_01908451.1| ATP-dependent Clp protease adaptor protein clpS [Plesiocystis
pacifica SIR-1]
gi|149819249|gb|EDM78683.1| ATP-dependent Clp protease adaptor protein clpS [Plesiocystis
pacifica SIR-1]
Length = 113
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 64/107 (59%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ K + + + R K + P++YRVLL ND+YTPM+FV+ +LQ F A
Sbjct: 1 MSDKRKDDPQRGVALKTRDERKSKRPRMYRVLLHNDDYTPMDFVVRLLQTVFRHSEGRAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH++G+G GV+ +EIAE KV Q +RQ++ PL ME +
Sbjct: 61 EIMLHVHNKGVGVAGVFTHEIAETKVAQTHMLARQNECPLMASMEPE 107
>gi|323697696|ref|ZP_08109608.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio sp.
ND132]
gi|323457628|gb|EGB13493.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
desulfuricans ND132]
Length = 104
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 62/102 (60%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ DSE+ +V+ PK Y+VLL ND+YT M+FV+ +L F++ A IML
Sbjct: 3 DPFTGDRSDSELLGQHEVKEPKKYKVLLHNDDYTTMDFVVEILVRVFHRTEAQATAIMLS 62
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH+QG G CGVY E+AE KV+ V ++ +PL+C ME +
Sbjct: 63 VHNQGYGVCGVYTAEVAETKVDLVHRLAKSAGFPLKCSMEGE 104
>gi|119470167|ref|ZP_01612933.1| modulator of ClpA substrate specificity [Alteromonadales bacterium
TW-7]
gi|119446588|gb|EAW27862.1| modulator of ClpA substrate specificity [Alteromonadales bacterium
TW-7]
Length = 105
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
K D DSE K++ P+ Y+V+L ND+YTPM+FVI VL FF D + A +M
Sbjct: 5 KDSGVIDTVRDSE---KQKLQPPRKYKVVLNNDDYTPMDFVIEVLTTFFNMDSDRATDVM 61
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+VH +G G CGVY+ ++A KV QV YSR +++PL C EQ+
Sbjct: 62 LQVHEKGKGICGVYSADVAYTKVEQVNRYSRDNEHPLLCSCEQE 105
>gi|171464059|ref|YP_001798172.1| ATP-dependent Clp protease adaptor protein ClpS [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193597|gb|ACB44558.1| ATP-dependent Clp protease adaptor protein ClpS [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 118
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/112 (41%), Positives = 69/112 (61%)
Query: 26 FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
+ + + +V+VP +Y+VLL+ND+YTPMEFV+ V+Q +F K
Sbjct: 6 RAPKNPTTGNPGNPYIEDTILLEKQVEQVKVPSMYKVLLLNDDYTPMEFVVMVIQEYFNK 65
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
D+ETA IML+VH G G CGV+ ++A KV+QV+ SR+ +PLQC ME+
Sbjct: 66 DYETATRIMLQVHLVGKGACGVFTRDVAATKVHQVIELSREAGHPLQCTMEE 117
>gi|331004964|ref|ZP_08328374.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
proteobacterium IMCC1989]
gi|330421206|gb|EGG95462.1| ATP-dependent Clp protease adaptor protein ClpS [gamma
proteobacterium IMCC1989]
Length = 126
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 60/101 (59%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
K ++ + V+ P +Y+V+++ND+YTPMEFV++ L++FF E A +M
Sbjct: 20 KEDDDYHHDHLLVEEAKPVVKKPPMYKVIMLNDDYTPMEFVVYALESFFGMGTEQATKVM 79
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
L+VH +G CGVY +IAE K QV + +++PL C +
Sbjct: 80 LQVHTEGKAICGVYTKDIAETKAAQVNQCAADNEHPLLCEI 120
>gi|298530330|ref|ZP_07017732.1| ATP-dependent Clp protease adaptor protein ClpS
[Desulfonatronospira thiodismutans ASO3-1]
gi|298509704|gb|EFI33608.1| ATP-dependent Clp protease adaptor protein ClpS
[Desulfonatronospira thiodismutans ASO3-1]
Length = 104
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 58/87 (66%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+++ P+ Y+VLL ND+YT MEFV+HVLQ F+K A IML VH G G CG+Y
Sbjct: 17 EEEIKEPQRYKVLLHNDDYTTMEFVVHVLQKVFHKTESEAMHIMLSVHKNGTGVCGIYTG 76
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E+AE KV V + +R+ YPL+C ME+
Sbjct: 77 EVAETKVAMVTSMARKKGYPLKCTMEE 103
>gi|34499123|ref|NP_903338.1| hypothetical protein CV_3668 [Chromobacterium violaceum ATCC 12472]
gi|39930967|sp|Q7NRW1|CLPS_CHRVO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|34104974|gb|AAQ61330.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 106
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/83 (54%), Positives = 63/83 (75%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
P +Y+VLL+ND++TPM+FV+ VLQ FF+ + E A IML+VH QG G CGVY ++A
Sbjct: 23 NPPPMYKVLLLNDDFTPMDFVVQVLQQFFHMNREKATHIMLQVHTQGHGVCGVYTKDVAA 82
Query: 115 MKVNQVMNYSRQHQYPLQCIMEQ 137
KV QV+ Y++ HQ+PLQC+ME+
Sbjct: 83 TKVEQVLQYAKAHQHPLQCVMEE 105
>gi|12230837|sp|Q9RWS9|CLPS_DEIRA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
Length = 113
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 32 MNKKGIAEFDNCLDSEVRF--SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
M + I + + ++ + P+L+RVLL+ND+YTPM++V+ VL+ FF K +
Sbjct: 1 MTRPTIPPGPPGAEGRTQTLERTETKKPRLWRVLLLNDDYTPMDYVVQVLEQFFRKTEQE 60
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A+ IML VHH+G G GVY ++AE KV QV ++++ +PL+ + E +
Sbjct: 61 AELIMLAVHHKGQGVAGVYTRDVAETKVAQVTAHAQREGHPLRVVAEPE 109
>gi|332035126|gb|EGI71639.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudoalteromonas
haloplanktis ANT/505]
Length = 102
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
K D DSE K++ P+ Y+V+L ND+YTPM+FVI VL FF D + A +M
Sbjct: 2 KDSGVIDTVRDSE---KQKLQPPRKYKVVLNNDDYTPMDFVIEVLTTFFNMDSDRATDVM 58
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+VH +G G CGVY+ ++A KV QV YSR +++PL C EQ+
Sbjct: 59 LQVHEKGKGICGVYSADVAHTKVEQVNRYSRDNEHPLLCSCEQE 102
>gi|86157217|ref|YP_464002.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85773728|gb|ABC80565.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 108
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 32 MNKKGIAEFDNCLDS-EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
M ++ D + + R + + P LY+VLL ND+YT EFV +VL F D E+A
Sbjct: 1 MAERTRPGGDTDVVVPKTRAERETKRPPLYKVLLHNDHYTTQEFVDYVLMTVFNHDPESA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH G+G G+Y YEIAE K + ++ +R+ +YPL +E +
Sbjct: 61 HRIMLHVHMHGVGVAGIYPYEIAETKARKTLDLAREAEYPLLVTIEPE 108
>gi|317487405|ref|ZP_07946193.1| ATP-dependent Clp protease adaptor protein ClpS [Bilophila
wadsworthia 3_1_6]
gi|316921337|gb|EFV42635.1| ATP-dependent Clp protease adaptor protein ClpS [Bilophila
wadsworthia 3_1_6]
Length = 108
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/111 (40%), Positives = 67/111 (60%), Gaps = 6/111 (5%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M+ + + + D +D E V PK+Y+VLL ND+YT MEFV+++L F+K
Sbjct: 1 MSQNPFHAAPGGQPDVIMDVE------VAEPKMYQVLLHNDDYTTMEFVVNILMTVFHKT 54
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ A IML VH +G G GVY +EIAE KV++ +R+ YPL+C +E+
Sbjct: 55 ADQATNIMLAVHKRGKGIAGVYPHEIAETKVDKTHFLAREAGYPLRCTLEE 105
>gi|257453454|ref|ZP_05618749.1| ATP-dependent Clp protease adaptor protein ClpS [Enhydrobacter
aerosaccus SK60]
gi|257449206|gb|EEV24154.1| ATP-dependent Clp protease adaptor protein ClpS [Enhydrobacter
aerosaccus SK60]
Length = 161
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+G D D + +++ P++Y V++ ND+YTPMEFV+ VLQN F ++A IM
Sbjct: 58 EGEPNTDPVEDVLL-ADPELKKPQMYAVVMYNDDYTPMEFVVDVLQNHFKHTLDSAISIM 116
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L +H QG G G+Y +IAE K V +RQ YPL +E +
Sbjct: 117 LAIHQQGKGIAGIYPKDIAETKAQAVNREARQAGYPLLSQIEPQ 160
>gi|254496296|ref|ZP_05109183.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
gi|254354484|gb|EET13132.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
Length = 107
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 70/107 (65%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ + I E +E ++ ++P+ YRV+L+ND+YTPM+FV+ VL++FF+ E A
Sbjct: 1 MSGQNIEEIVRHKVAEPEVRTENKLPRKYRVVLLNDDYTPMDFVVDVLKHFFHLSEEMAV 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML+VH QG G CGV+ +IAE KV V Y+R +Q+PL ME +
Sbjct: 61 QVMLQVHIQGKGVCGVFTRDIAETKVALVNEYARMNQHPLLSSMEPE 107
>gi|320354854|ref|YP_004196193.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfobulbus
propionicus DSM 2032]
gi|320123356|gb|ADW18902.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfobulbus
propionicus DSM 2032]
Length = 105
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 63/96 (65%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ R +++ P LY+VLL ND+YT M+FV+ +LQ F+K+ + A IML VHHQG+
Sbjct: 9 QDKIQTRDKEQLQEPPLYKVLLHNDDYTTMDFVVMILQTVFHKNTDEATRIMLNVHHQGV 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G GVY EI E KV V ++++Q+PL+C +E+
Sbjct: 69 GIAGVYTREIGETKVAIVHRLAKRNQFPLRCSLEKD 104
>gi|89901532|ref|YP_524003.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodoferax
ferrireducens T118]
gi|122478825|sp|Q21UT1|CLPS_RHOFD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|89346269|gb|ABD70472.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodoferax
ferrireducens T118]
Length = 120
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 36 GIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ D + + K + P +Y+V+++ND+YTPMEFV+ V+Q FF KD E A IM
Sbjct: 15 QEPDRDEGGAVVLERRTQKTKPPHMYQVVMLNDDYTPMEFVVVVIQEFFGKDLEAATRIM 74
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
LK+H G G CGVY+ ++A KV+QV++ + + +PL+CI E
Sbjct: 75 LKIHLDGKGVCGVYSKDVAATKVDQVLDAANKAGHPLKCISEP 117
>gi|319956042|ref|YP_004167305.1| ATP-dependent clp protease adaptor protein clps [Nitratifractor
salsuginis DSM 16511]
gi|319418446|gb|ADV45556.1| ATP-dependent Clp protease adaptor protein ClpS [Nitratifractor
salsuginis DSM 16511]
Length = 99
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/82 (52%), Positives = 55/82 (67%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
P+LYRV+L ND+YT MEFVI VL++ F+K A+ IM VH +G CGVY YEIAE K
Sbjct: 17 PELYRVILHNDDYTTMEFVIDVLRSIFHKSTREAEEIMWTVHEKGQAVCGVYTYEIAETK 76
Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
V QV +RQ+ +PL +E
Sbjct: 77 VEQVKLKARQNGFPLLATLEAD 98
>gi|330427907|gb|AEC19241.1| ATP-dependent Clp protease adaptor protein ClpS [Pusillimonas sp.
T7-7]
Length = 107
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 38 AEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ +N + + K+ P +Y+V+L+ND+YTPMEFV+ VLQ F K+ + A IMLK
Sbjct: 3 PQIENQRTTVLDRQPAKLAPPPMYQVVLLNDDYTPMEFVVAVLQRIFGKNEDEAARIMLK 62
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VHH+G G CGVY +IA +V V + Q+PLQC+ME
Sbjct: 63 VHHEGRGVCGVYPRDIAATRVEMVRQMAHARQHPLQCVMEP 103
>gi|317153522|ref|YP_004121570.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
aespoeensis Aspo-2]
gi|316943773|gb|ADU62824.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
aespoeensis Aspo-2]
Length = 104
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 58/102 (56%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ E+ +VR P+ Y+VLL ND+YT M+FVI VL F K A IML
Sbjct: 3 DPFTGDRTSPELFDEREVREPRKYKVLLHNDDYTTMDFVIEVLVRVFRKSEAQAMAIMLA 62
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH++G G CG Y E+AE KV+ V +R +PL+C ME +
Sbjct: 63 VHNEGYGVCGTYTAEVAETKVDMVHRLARSAGFPLKCSMEGE 104
>gi|218885563|ref|YP_002434884.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|226706562|sp|B8DJU4|CLPS_DESVM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|218756517|gb|ACL07416.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 100
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 64/98 (65%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D D+E+ +VR P+++RVLL ND+YT MEFV+ +L F + + A IML VH
Sbjct: 2 PDGGRDTELLIEDEVREPRMFRVLLHNDDYTTMEFVVSILIEVFRRTPDEATRIMLAVHE 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G+GECGVY E+AE KV V +R+ YPL+C +E+
Sbjct: 62 KGVGECGVYTAEVAETKVALVHARARREGYPLRCTLEE 99
>gi|94985574|ref|YP_604938.1| ATP-dependent Clp protease adaptor protein ClpS [Deinococcus
geothermalis DSM 11300]
gi|94555855|gb|ABF45769.1| ATP-dependent Clp protease adaptor protein ClpS [Deinococcus
geothermalis DSM 11300]
Length = 113
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 65/106 (61%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
+ G + R + + P+LYRVLL+ND+YTPM+FV+ VLQ +F K A+
Sbjct: 5 RRDGEGRTGTLERAGTREQTTTQRPRLYRVLLLNDDYTPMDFVVEVLQTYFRKSETEAQL 64
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VHH+G G GVY ++AE KV QV ++R+ YPL+ + E +
Sbjct: 65 IMLAVHHKGQGVAGVYTRDVAETKVAQVTAHARRAGYPLRLVAEPE 110
>gi|77919855|ref|YP_357670.1| ATP-dependent Clp protease adaptor protein ClpS [Pelobacter
carbinolicus DSM 2380]
gi|77545938|gb|ABA89500.1| ATP-dependent Clp protease adaptor protein ClpS [Pelobacter
carbinolicus DSM 2380]
Length = 104
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 65/99 (65%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
+ + + E R +++ P L+RVL+ ND+YT MEFV+ VLQ F+K A IML +H
Sbjct: 5 KTSSDVHIEERKATRTAPPPLFRVLMHNDDYTTMEFVVEVLQGVFHKSAAEAHRIMLNIH 64
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
++G G+CG + +EIAE KV +V +RQ +PL+C +E+
Sbjct: 65 NEGTGQCGTFPHEIAETKVARVHQVARQAGFPLRCSLEE 103
>gi|152997267|ref|YP_001342102.1| ATP-dependent Clp protease adaptor protein ClpS [Marinomonas sp.
MWYL1]
gi|150838191|gb|ABR72167.1| ATP-dependent Clp protease adaptor protein ClpS [Marinomonas sp.
MWYL1]
Length = 116
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
++ + + ++++ P +Y+V+L ND+YTPM+FV+ VLQ FF D E A
Sbjct: 11 SEDDEQHGHSSIAIAPE-ETELKPPSMYQVVLFNDDYTPMDFVVFVLQRFFSMDGEKANQ 69
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML+VH +G G CG+Y ++IAE KV V + Q+++PL C +++
Sbjct: 70 VMLEVHQKGKGVCGIYPFDIAETKVAMVQQFVEQNEHPLMCDLQK 114
>gi|332039758|gb|EGI76158.1| ATP-dependent Clp protease adaptor protein ClpS [Hylemonella
gracilis ATCC 19624]
Length = 126
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 25 IFMADSRMNKKGIAEFDNCLD--SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF 82
+ K N D R KV+ P++++V+++ND+YTPMEFV+ V+Q +
Sbjct: 10 PAPPKLPVVKPDRENQGNGGDAVVLERRPQKVQPPQMFQVVMLNDDYTPMEFVVVVIQEY 69
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
F KD ETA IMLK+H G G CGVY ++A KV+QV+ +R+ +PLQC+ E
Sbjct: 70 FNKDLETATQIMLKIHLDGRGICGVYTKDVAATKVDQVLEAARKAGHPLQCVAEP 124
>gi|315126397|ref|YP_004068400.1| modulator of ClpA substrate specificity [Pseudoalteromonas sp.
SM9913]
gi|315014911|gb|ADT68249.1| modulator of ClpA substrate specificity [Pseudoalteromonas sp.
SM9913]
Length = 102
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
K D DSE K++ P+ Y+V+L ND+YTPM+FVI +L FF D + A +M
Sbjct: 2 KDSGVIDTVRDSE---KQKLQPPRKYKVVLNNDDYTPMDFVIEILMTFFNMDSDRATDVM 58
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L++H QG G CGVY+ ++A K QV YSR +++PL C EQ+
Sbjct: 59 LQIHQQGKGICGVYSADVAHTKAEQVNRYSRDNEHPLLCSCEQE 102
>gi|95930477|ref|ZP_01313213.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfuromonas
acetoxidans DSM 684]
gi|95133517|gb|EAT15180.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfuromonas
acetoxidans DSM 684]
Length = 103
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 56/100 (56%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
+ EV + P Y V++ ND+YT MEFV+ VL+N + K A IML +
Sbjct: 3 PPTQTTPEGEVLSKEQTARPPRYNVIMHNDDYTTMEFVVEVLENIYRKQPAEATRIMLAI 62
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
HH+G+ CG Y +EIAE KV Q +R +PL+C +E+
Sbjct: 63 HHEGLAVCGNYPFEIAETKVEQTHRRARSAGHPLRCSIEE 102
>gi|329905634|ref|ZP_08274165.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacteraceae
bacterium IMCC9480]
gi|327547556|gb|EGF32362.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacteraceae
bacterium IMCC9480]
Length = 102
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 46/101 (45%), Positives = 66/101 (65%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+A VR + K++ P +Y+V L+ND+YTPMEFV+ ++Q +F KD E A IML
Sbjct: 1 MATKHENGTVLVRQTQKLKPPSMYQVYLLNDDYTPMEFVVAIIQEYFNKDRENATQIMLM 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH G G CGVY +IA KV V+ ++R+ +PLQC+ME+
Sbjct: 61 VHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEE 101
>gi|303327023|ref|ZP_07357465.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio sp.
3_1_syn3]
gi|302863011|gb|EFL85943.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio sp.
3_1_syn3]
Length = 106
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 62/98 (63%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+ +S K++ P YRVLL ND+YT M+FVI++L F+K E A IML VH
Sbjct: 7 GEADGESRTIVVKKLKEPDRYRVLLHNDDYTSMDFVINILCGVFHKPLEEATAIMLAVHQ 66
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
QG+G+CG+Y E+AE KV++V + +PL+C ME+
Sbjct: 67 QGVGQCGIYTREVAEAKVSRVHREAHGAGFPLRCTMEK 104
>gi|197121252|ref|YP_002133203.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
sp. K]
gi|220915956|ref|YP_002491260.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
dehalogenans 2CP-1]
gi|196171101|gb|ACG72074.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
sp. K]
gi|219953810|gb|ACL64194.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 108
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 32 MNKKGIAEFDNCLDS-EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
M ++ D + + R + + P LYRVLL ND+YT EFV VL F D E+A
Sbjct: 1 MAERTRPGGDTEVVVPKTRAERETKRPPLYRVLLHNDHYTTQEFVDFVLMTVFNHDPESA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH G+G G+Y YEIAE K + M+ +R+ +YPL +E +
Sbjct: 61 HRIMLHVHMHGVGVAGIYPYEIAETKARKTMDLAREAEYPLLVTIEPE 108
>gi|85858021|ref|YP_460223.1| ATP-dependent Clp protease adaptor protein [Syntrophus
aciditrophicus SB]
gi|123515753|sp|Q2LQK8|CLPS_SYNAS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|85721112|gb|ABC76055.1| ATP-dependent Clp protease adaptor protein [Syntrophus
aciditrophicus SB]
Length = 107
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 65/106 (61%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M + + + + + KV P++YRV+L ND+YT M+FV+ +L F+K A
Sbjct: 1 MQNETDVIKNFDQELNIEWEDKVMEPRMYRVILHNDHYTTMDFVVQILMTIFHKPAAQAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IML VH +G G CGVY Y+IA K+ QV +RQ++YPL+C M++
Sbjct: 61 RIMLDVHRKGQGVCGVYTYDIASTKIAQVHFMARQNEYPLRCSMDE 106
>gi|92114559|ref|YP_574487.1| ATP-dependent Clp protease adaptor protein ClpS [Chromohalobacter
salexigens DSM 3043]
gi|91797649|gb|ABE59788.1| ATP-dependent Clp protease adaptor protein ClpS [Chromohalobacter
salexigens DSM 3043]
Length = 131
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 59/87 (67%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
++ P +Y+V+L ND++TPMEFV+ VLQ+FF + E A +ML VH G CG++
Sbjct: 43 DPELAQPPMYKVVLHNDDFTPMEFVVEVLQSFFAMEREKAVQVMLVVHTHGKATCGIFTR 102
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+IAE K +QV Y+R+ Q+PL C +++
Sbjct: 103 DIAETKCHQVNEYARECQHPLLCDIDK 129
>gi|49475405|ref|YP_033446.1| hypothetical protein BH06170 [Bartonella henselae str. Houston-1]
gi|49238211|emb|CAF27421.1| hypothetical protein BH06170 [Bartonella henselae str. Houston-1]
Length = 123
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/116 (47%), Positives = 78/116 (67%)
Query: 21 LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
+ + I K E+ + + SK++ PKLYRVLL++D+YTPM+FVI VL+
Sbjct: 6 IKNSITHFMHNEKGKNGDEYRHDAFIMPKMRSKLQKPKLYRVLLLDDDYTPMDFVIFVLK 65
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
+FF K+ E A IML VH G+GECG+Y YE+AEMK+ QV +RQ+++PLQC+ME
Sbjct: 66 SFFKKNFEEAMHIMLSVHQNGVGECGIYNYEVAEMKIIQVRECARQNEHPLQCVME 121
>gi|313498102|gb|ADR59468.1| ClpS [Pseudomonas putida BIRD-1]
Length = 81
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 55/80 (68%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+Y+V+L ND+YTPM+FV+ VL+ FF + E A IML VH +G CG++ +IAE K
Sbjct: 1 MYKVVLFNDDYTPMDFVVEVLETFFSLNRELATKIMLTVHTEGRAVCGLFTRDIAETKAM 60
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
QV Y+R+ Q+PL C +E+
Sbjct: 61 QVNQYARESQHPLLCEIEKD 80
>gi|268680246|ref|YP_003304677.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurospirillum
deleyianum DSM 6946]
gi|268618277|gb|ACZ12642.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurospirillum
deleyianum DSM 6946]
Length = 102
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 69/102 (67%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ + + ++E +++ P+LY+VLL+ND+Y+ MEFVI VL F+ E A IML
Sbjct: 1 MHQSNPAFENETVELIEIKEPRLYKVLLLNDDYSSMEFVIKVLMQIFHHSFEKATEIMLS 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH +G G CGVYAYEIAE KV+QV +++ ++PL+ IME +
Sbjct: 61 VHEKGKGLCGVYAYEIAETKVSQVRKMAKEEKFPLRAIMEAE 102
>gi|218779933|ref|YP_002431251.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfatibacillum
alkenivorans AK-01]
gi|259491244|sp|B8FGA3|CLPS_DESAA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|218761317|gb|ACL03783.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfatibacillum
alkenivorans AK-01]
Length = 104
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 60/98 (61%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
++ D + K P++++VLL ND+YT MEFV+ VLQ F K A IML VH++
Sbjct: 7 EDLGDVLTEPTQKTERPRMFKVLLHNDDYTTMEFVVGVLQRVFNKSVPEATRIMLNVHNR 66
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+G GVY E+AE K+ V + ++ +PL+C ME +
Sbjct: 67 GVGVAGVYTAEVAETKIETVHSMAQADGFPLKCSMEPE 104
>gi|120611897|ref|YP_971575.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax
citrulli AAC00-1]
gi|158513033|sp|A1TS63|CLPS_ACIAC RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|120590361|gb|ABM33801.1| ATP-dependent Clp protease adaptor protein ClpS [Acidovorax
citrulli AAC00-1]
Length = 122
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 63/98 (64%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D R + + + P++Y+V+++ND+YTPMEFVI VLQ FF KD E A IMLK+H
Sbjct: 23 DDGGSVVLERRTQRTQPPQMYQVVMLNDDYTPMEFVIVVLQEFFGKDREAATQIMLKIHL 82
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G G CGVY+ ++A KV QV + + +PLQC+ E
Sbjct: 83 DGKGVCGVYSRDVAATKVEQVREAAHKAGHPLQCLSEP 120
>gi|46580012|ref|YP_010820.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
vulgaris str. Hildenborough]
gi|120602577|ref|YP_966977.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
vulgaris DP4]
gi|67460332|sp|Q72BN4|CLPS_DESVH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|166214734|sp|A1VDN4|CLPS_DESVV RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|46449428|gb|AAS96079.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
vulgaris str. Hildenborough]
gi|120562806|gb|ABM28550.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
vulgaris DP4]
gi|311233989|gb|ADP86843.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
vulgaris RCH1]
Length = 104
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 61/96 (63%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
DS++ VR+P++YRVLL ND+YT MEFV+ +L F K E A IML VH G
Sbjct: 8 PGYDSDILVEDDVRLPRMYRVLLHNDDYTTMEFVVSILVEVFRKTAEQATAIMLAVHRDG 67
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+GECGVY +E+AE K V +R+ YPL+C E+
Sbjct: 68 VGECGVYTFEVAETKAAIVHARARREGYPLRCSTEE 103
>gi|320539589|ref|ZP_08039254.1| putative regulatory protein for ClpA substrate specificity
[Serratia symbiotica str. Tucson]
gi|320030348|gb|EFW12362.1| putative regulatory protein for ClpA substrate specificity
[Serratia symbiotica str. Tucson]
Length = 106
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 65/104 (62%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ +E + ++ P +Y+V+L D+YTPMEFVI VLQ FF+ D E A +
Sbjct: 2 GNNNDWLNFEHLTEEKQIDALKPPSMYKVILNKDDYTPMEFVIDVLQKFFFYDIERATQL 61
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML+VH+QG CGV+ E+AE KV V Y+R+++YPL C +E+
Sbjct: 62 MLRVHYQGKAICGVFTAEVAETKVIHVNCYARENEYPLLCTLEK 105
>gi|94263020|ref|ZP_01286839.1| ATP-dependent Clp protease adaptor protein ClpS [delta
proteobacterium MLMS-1]
gi|93456563|gb|EAT06671.1| ATP-dependent Clp protease adaptor protein ClpS [delta
proteobacterium MLMS-1]
Length = 103
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 60/97 (61%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ +R P LY+VLL ND+YT M+FV+ VL+ F+ D A IM+ VH +G
Sbjct: 7 HDHGVVTEKQQDLRRPPLYKVLLHNDDYTTMDFVVMVLEMVFHHDQAAAHRIMMNVHREG 66
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G GVY + AE KV V N +R+H+YPL+C +EQ+
Sbjct: 67 VGVAGVYPRDSAETKVAMVHNLARKHEYPLKCSLEQE 103
>gi|67460279|sp|Q6G5D4|CLPS_BARHE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
Length = 110
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/106 (50%), Positives = 75/106 (70%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
K E+ + + SK++ PKLYRVLL++D+YTPM+FVI VL++FF K+ E A
Sbjct: 3 NEKGKNGDEYRHDAFIMPKMRSKLQKPKLYRVLLLDDDYTPMDFVIFVLKSFFKKNFEEA 62
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
IML VH G+GECG+Y YE+AEMK+ QV +RQ+++PLQC+ME
Sbjct: 63 MHIMLSVHQNGVGECGIYNYEVAEMKIIQVRECARQNEHPLQCVME 108
>gi|78357143|ref|YP_388592.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|123552230|sp|Q30ZJ9|CLPS_DESDG RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|78219548|gb|ABB38897.1| ATP-dependent clp protease adaptor protein ClpS [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 104
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 62/99 (62%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
+ D++V +++ P+ +RVLL ND+YT M+FV+ VL + F K E A IML VH
Sbjct: 5 KLSTREDADVLLEEELKEPRRFRVLLHNDDYTSMDFVVAVLIDIFRKSREQAMSIMLSVH 64
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+GIG CGVY E+AE KV V +R +PL+C ME+
Sbjct: 65 EKGIGVCGVYTAEVAETKVAMVHARARAEGFPLRCSMEE 103
>gi|237749126|ref|ZP_04579606.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacter
formigenes OXCC13]
gi|229380488|gb|EEO30579.1| ATP-dependent Clp protease adaptor protein ClpS [Oxalobacter
formigenes OXCC13]
Length = 102
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 63/84 (75%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
++ P +Y+V+L+ND++TPMEFVI VLQ +F+KD E A IMLKVHH+G G CG++ +IA
Sbjct: 18 LKAPPMYKVVLLNDDFTPMEFVISVLQEYFFKDREAATRIMLKVHHEGKGICGIFPKDIA 77
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
KV V+ ++R +PLQC ME+
Sbjct: 78 NTKVELVLKHARGEGHPLQCTMEE 101
>gi|240850299|ref|YP_002971692.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
grahamii as4aup]
gi|240267422|gb|ACS51010.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
grahamii as4aup]
Length = 110
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/106 (50%), Positives = 70/106 (66%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
K E + + +K+ PKL RV L+ND+YTPM+FV+ VL+NFF K E A
Sbjct: 3 NEKGKNWDEVRHGAVIMPKARAKLEKPKLCRVFLLNDDYTPMDFVVFVLKNFFKKSFEEA 62
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
IML VHH GIGECG Y YE+AEMK+ QV +RQ+++PLQC+ME
Sbjct: 63 TRIMLNVHHSGIGECGTYTYEVAEMKILQVRECARQNEHPLQCVME 108
>gi|115376673|ref|ZP_01463901.1| ATP-dependent Clp protease adaptor protein ClpS [Stigmatella
aurantiaca DW4/3-1]
gi|310823925|ref|YP_003956283.1| ATP-dependent CLP protease, adapter protein CLPs [Stigmatella
aurantiaca DW4/3-1]
gi|115366290|gb|EAU65297.1| ATP-dependent Clp protease adaptor protein ClpS [Stigmatella
aurantiaca DW4/3-1]
gi|309396997|gb|ADO74456.1| ATP-dependent Clp protease, adapter protein ClpS [Stigmatella
aurantiaca DW4/3-1]
Length = 107
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 47/100 (47%), Positives = 62/100 (62%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
E D + +E R K++ P LY+VLL NDNYT EFV+ VL+ F+K A IML VH
Sbjct: 6 ENDENVVTETRPEKKLKKPTLYKVLLHNDNYTTREFVVAVLKEIFHKSEGDAVQIMLHVH 65
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ GIG GVY YE+AE K+ V +R + YPL+ ME +
Sbjct: 66 YNGIGVAGVYTYEVAETKIKTVEAAARDNGYPLRLSMEPE 105
>gi|226355736|ref|YP_002785476.1| ATP-dependent Clp protease adaptor protein clpS [Deinococcus
deserti VCD115]
gi|226317726|gb|ACO45722.1| putative ATP-dependent Clp protease adaptor protein clpS
[Deinococcus deserti VCD115]
Length = 105
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 65/98 (66%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D ++ S + P+LYRVLL+ND+YTPMEFV+ VL+ +F K + A+ IML VHH+
Sbjct: 5 DGESHTQTLERSATQRPRLYRVLLLNDDYTPMEFVVRVLELYFRKTEQEAELIMLAVHHK 64
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G G G+Y ++AE KV QV + +RQ YPL+ + E +
Sbjct: 65 GQGVAGIYTRDVAETKVAQVTDRARQEGYPLRLVSEPE 102
>gi|301167864|emb|CBW27449.1| ATP-dependent Clp protease adaptor protein clpS [Bacteriovorax
marinus SJ]
Length = 123
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/79 (53%), Positives = 61/79 (77%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
Y+VL+ ND+YT MEFVI++LQ F K+ E A+ IMLKVH++GIG CGVY+YEIAE K +
Sbjct: 44 YKVLIHNDDYTTMEFVIYILQKVFAKNLEEAQAIMLKVHNEGIGVCGVYSYEIAETKSEK 103
Query: 120 VMNYSRQHQYPLQCIMEQK 138
V ++++ +PL+C +E +
Sbjct: 104 VNQEAKENGHPLKCTIEPE 122
>gi|283850415|ref|ZP_06367704.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio sp.
FW1012B]
gi|283574441|gb|EFC22412.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio sp.
FW1012B]
Length = 100
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 61/97 (62%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ V VR P+ Y+VLL ND+YT MEFV+ VL F+K+ A IML VH+
Sbjct: 3 EEQPGLGVDVEEDVREPRRYKVLLHNDDYTTMEFVVQVLVGVFHKNENEATQIMLNVHNN 62
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G+G CG + E+AE+KV+ V ++++ YPL+C ME+
Sbjct: 63 GVGVCGEFTAEVAELKVSLVHRLAKENGYPLKCSMEE 99
>gi|198282816|ref|YP_002219137.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198247337|gb|ACH82930.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 102
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 69/91 (75%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+ + + P++YRVLLVND++TPM++V+H+L+ +F+K H+ A +M+ VH QG G CG+
Sbjct: 12 LEREPQAQEPRMYRVLLVNDDFTPMDYVVHILEAYFHKPHDEAVAVMMAVHQQGRGLCGI 71
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ Y++AE KV V +RQHQ+PL+CIME++
Sbjct: 72 FPYDLAETKVALVTADARQHQHPLRCIMEKE 102
>gi|87122218|ref|ZP_01078101.1| hypothetical protein MED121_05518 [Marinomonas sp. MED121]
gi|86162538|gb|EAQ63820.1| hypothetical protein MED121_05518 [Marinomonas sp. MED121]
Length = 114
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 66/87 (75%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
++++ P +Y+V+L+ND++TPM+FV+ VLQ FFY D E A+ +ML+VH++G G CGVY +
Sbjct: 26 ETELKPPSMYQVVLLNDDFTPMDFVVFVLQKFFYMDGEKAQKVMLEVHNKGKGVCGVYPF 85
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+IAE KV V + Q+++PL C +++
Sbjct: 86 DIAETKVAMVQQFVEQNEHPLMCDLQK 112
>gi|218668114|ref|YP_002425013.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218520327|gb|ACK80913.1| ATP-dependent Clp protease adaptor protein ClpS [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 114
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 69/91 (75%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+ + + P++YRVLLVND++TPM++V+H+L+ +F+K H+ A +M+ VH QG G CG+
Sbjct: 24 LEREPQAQEPRMYRVLLVNDDFTPMDYVVHILEAYFHKPHDEAVAVMMAVHQQGRGLCGI 83
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ Y++AE KV V +RQHQ+PL+CIME++
Sbjct: 84 FPYDLAETKVALVTADARQHQHPLRCIMEKE 114
>gi|121601730|ref|YP_988887.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
bacilliformis KC583]
gi|120613907|gb|ABM44508.1| ATP-dependent Clp protease adaptor protein ClpS [Bartonella
bacilliformis KC583]
Length = 92
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 51/88 (57%), Positives = 71/88 (80%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ K++ PKLYRVLL++D+YTPM+FV+ +L+NFF K+ E A IML +HH GIGECG Y
Sbjct: 3 QVRQKLQKPKLYRVLLLDDDYTPMDFVVFILKNFFKKNFEEATRIMLNIHHNGIGECGTY 62
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIME 136
YE+AEMK+ QVM +RQ+++PLQC++E
Sbjct: 63 TYEVAEMKIVQVMECARQNEHPLQCVIE 90
>gi|77360665|ref|YP_340240.1| modulator of ClpA substrate specificity [Pseudoalteromonas
haloplanktis TAC125]
gi|76875576|emb|CAI86797.1| modulator of ClpA substrate specificity [Pseudoalteromonas
haloplanktis TAC125]
Length = 102
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 61/93 (65%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
+ K++ P+ Y+V+L ND+YTPM+FVI VL FF D + A +ML++H QG G C
Sbjct: 10 VRDKEKQKLQPPRKYKVVLNNDDYTPMDFVIEVLMTFFNMDSDRATDVMLQIHQQGKGIC 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GV++ ++A K QV YSR +++PL C EQ+
Sbjct: 70 GVFSSDVAHTKAEQVNRYSRDNEHPLLCSCEQE 102
>gi|298368623|ref|ZP_06979941.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria sp. oral
taxon 014 str. F0314]
gi|298282626|gb|EFI24113.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria sp. oral
taxon 014 str. F0314]
Length = 123
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 34 KKGIAEFDNCLDSEV-RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
K + D+ + K PK Y V L+ND+YT M+FV+ VL F E A
Sbjct: 18 KMNRPNTSHESDTLLNENDRKTAPPKRYGVFLLNDDYTTMDFVVEVLSEVFMLGEEQAVA 77
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML VHH+G G CG Y +IA+ K QVM ++ +PLQC +E+
Sbjct: 78 VMLLVHHEGKGLCGTYTRDIAQTKQLQVMQRAKAAGHPLQCTVEE 122
>gi|114707424|ref|ZP_01440320.1| ATP-dependent Clp protease adaptor protein ClpS [Fulvimarina pelagi
HTCC2506]
gi|114536983|gb|EAU40111.1| ATP-dependent Clp protease adaptor protein ClpS [Fulvimarina pelagi
HTCC2506]
Length = 101
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 57/98 (58%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D ++ + R KV PKLY+VLL+ND+YTP EFV+ VL+ F A+ +M+ H +
Sbjct: 3 DTTVERKTRVKPKVERPKLYKVLLLNDDYTPREFVVMVLRAVFRLSDSQAETVMMTAHQK 62
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G VY ++AE K ++ + +++H YPL E +
Sbjct: 63 GSCVVSVYPRDVAETKASEATDLAKEHGYPLLFSTEPE 100
>gi|219855399|ref|YP_002472521.1| hypothetical protein CKR_2056 [Clostridium kluyveri NBRC 12016]
gi|219569123|dbj|BAH07107.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 104
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
+ +++ P +Y+V++ ND+YT MEFV++VL F K A IM VH +GIG
Sbjct: 12 LKQNSKVEIKRPPMYKVIIYNDDYTTMEFVVNVLVKIFKKSDVEAVQIMYDVHRKGIGIA 71
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y Y+IA K Q ++ +R +PL+ ME++
Sbjct: 72 GIYVYDIAVTKTAQAISMARNSGFPLKFSMEEE 104
>gi|237752679|ref|ZP_04583159.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
winghamensis ATCC BAA-430]
gi|229376168|gb|EEO26259.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
winghamensis ATCC BAA-430]
Length = 101
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/97 (47%), Positives = 65/97 (67%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D D K++ P YRV+L+ND+YT EFVI VLQ F+KD E + +ML++HH
Sbjct: 4 DAQFDQITETLEKIQEPIRYRVILLNDDYTTQEFVIEVLQAIFHKDFEESLNLMLQIHHN 63
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G G CG+Y Y+IAE+KV QV +++ QYPL+ I+E+
Sbjct: 64 GKGVCGIYPYDIAEIKVAQVRKMAKEKQYPLRAILEK 100
>gi|153954954|ref|YP_001395719.1| ClpS [Clostridium kluyveri DSM 555]
gi|146347812|gb|EDK34348.1| ClpS [Clostridium kluyveri DSM 555]
Length = 99
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
+ +++ P +Y+V++ ND+YT MEFV++VL F K A IM VH +GIG
Sbjct: 7 LKQNSKVEIKRPPMYKVIIYNDDYTTMEFVVNVLVKIFKKSDVEAVQIMYDVHRKGIGIA 66
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y Y+IA K Q ++ +R +PL+ ME++
Sbjct: 67 GIYVYDIAVTKTAQAISMARNSGFPLKFSMEEE 99
>gi|307721665|ref|YP_003892805.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurimonas
autotrophica DSM 16294]
gi|306979758|gb|ADN09793.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfurimonas
autotrophica DSM 16294]
Length = 99
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 62/97 (63%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
E+ + ++ PK Y+V L+ND+YT M+FV+ +L + F+K +E A+ IML+VH
Sbjct: 3 TNTHLEIDEDTALKYPKKYKVFLLNDDYTSMDFVVDILMSIFHKSYEQAQDIMLEVHKND 62
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G CGVY YEIAE K+ QV ++ +PL+ ME++
Sbjct: 63 RGLCGVYTYEIAETKIMQVRRKAKDSGFPLKATMEEE 99
>gi|224436508|ref|ZP_03657522.1| hypothetical protein HcinC1_01115 [Helicobacter cinaedi CCUG 18818]
Length = 105
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 62/98 (63%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
FD +S + + PKLYRVLL+ND++T M FV H+L F K + A+ I LKVH+
Sbjct: 6 FDTSFESWTHTGTMLEEPKLYRVLLLNDDWTAMNFVTHILMEVFDKTSQEARAITLKVHN 65
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G G CG+Y Y+IAE+K V +++ YPL+ I E+
Sbjct: 66 EGKGVCGIYPYDIAELKTQLVSQKAKEQGYPLRVITEE 103
>gi|149909598|ref|ZP_01898251.1| ATP-dependent Clp protease adaptor protein ClpS [Moritella sp.
PE36]
gi|149807302|gb|EDM67255.1| ATP-dependent Clp protease adaptor protein ClpS [Moritella sp.
PE36]
Length = 104
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 45/95 (47%), Positives = 62/95 (65%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + +++ P Y+V L ND+YTPM+FV+ VLQ FF D + A IML VHH+G
Sbjct: 9 DFKTSIESELELKPPSFYKVFLNNDDYTPMDFVVDVLQRFFSMDIDKANQIMLTVHHRGR 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGV+ EIAE KV+QVM Y++ ++ L C MEQ
Sbjct: 69 GVCGVFTAEIAETKVSQVMQYAKDNEQSLLCTMEQ 103
>gi|153003706|ref|YP_001378031.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
sp. Fw109-5]
gi|152027279|gb|ABS25047.1| ATP-dependent Clp protease adaptor protein ClpS [Anaeromyxobacter
sp. Fw109-5]
Length = 108
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 32 MNKKGIAEFDNCLDS-EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
M ++ D + + + + P L+RVLL ND+YT EFV VL F+ D E+A
Sbjct: 1 MAERSRPGGDTDVVVPRTKAEKETKRPSLFRVLLHNDDYTTQEFVDWVLVTVFHHDPESA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML VH G+G G+Y +EIAE K + M +R+ +YPL +E +
Sbjct: 61 HRIMLHVHMHGVGLAGIYPFEIAETKAEKTMALAREAEYPLLVTVEPE 108
>gi|257460421|ref|ZP_05625522.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
gracilis RM3268]
gi|257441752|gb|EEV16894.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
gracilis RM3268]
Length = 101
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 57/97 (58%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ R +K VP+ Y+V+L+ND+ T M+FV+++L F K+ A +M+KVH QG
Sbjct: 5 TGVQIRTRAKTKSFVPRPYKVILLNDDVTTMDFVVYILMEIFAKNFNDAVDLMMKVHKQG 64
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG Y EIAE K V+ ++ +PL+C +E+
Sbjct: 65 RAVCGAYPKEIAECKQQAVLQAAKAAGFPLRCEIEED 101
>gi|157738129|ref|YP_001490813.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
butzleri RM4018]
gi|315636272|ref|ZP_07891522.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
butzleri JV22]
gi|157699983|gb|ABV68143.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
butzleri RM4018]
gi|315479361|gb|EFU70044.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
butzleri JV22]
Length = 99
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 61/98 (62%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
N ++ E+ ++ PK Y V L+ND+Y+ M+FVI VL F K + A IML +H+
Sbjct: 2 SNEIEVELNDELDLQEPKKYNVFLLNDDYSTMDFVIDVLVKIFRKSTQDATEIMLNIHNN 61
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G G CG+Y +EIA KV QV +R+ +PL+ +ME++
Sbjct: 62 GKGLCGIYTHEIALTKVMQVKTMAREKGFPLKAVMEEE 99
>gi|118475182|ref|YP_891885.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
fetus subsp. fetus 82-40]
gi|118414408|gb|ABK82828.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
fetus subsp. fetus 82-40]
Length = 99
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 58/97 (59%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
S + K P L++V+L+ND T M+FV+ +L + F K A +MLK+H G
Sbjct: 3 TKKSSITKTKIKDFKPNLFKVMLLNDEVTTMDFVVMILIDIFNKSKNEAIELMLKIHQSG 62
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA+ K +V+N ++ + +PL+C++E++
Sbjct: 63 RAICGIYTKEIAQTKQMEVLNLAKANGFPLKCVIEEE 99
>gi|320537709|ref|ZP_08037635.1| ATP-dependent Clp protease adaptor protein ClpS [Treponema
phagedenis F0421]
gi|320145446|gb|EFW37136.1| ATP-dependent Clp protease adaptor protein ClpS [Treponema
phagedenis F0421]
Length = 120
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 65/100 (65%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
+ ++S V K++ P YRVLL+ND+ T M+FVI +L F+K+++ A+ IML +H
Sbjct: 21 NDEIKIESTVLIKEKIKEPGFYRVLLLNDDITTMDFVISILIEVFHKNYKEAEIIMLTIH 80
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
QG G G Y Y+IA + +V ++++ +PL+CIME++
Sbjct: 81 TQGSGLVGTYTYDIAATRCKKVEMLAQENGFPLKCIMEKE 120
>gi|255527633|ref|ZP_05394494.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
carboxidivorans P7]
gi|296185311|ref|ZP_06853721.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
carboxidivorans P7]
gi|255508675|gb|EET85054.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
carboxidivorans P7]
gi|296050145|gb|EFG89569.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
carboxidivorans P7]
Length = 99
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 58/92 (63%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
+ K+R PK+Y+V++ ND+YT MEFV+ +L F K A IM VH GIG G
Sbjct: 8 KQDTKIKIRKPKMYKVIIYNDDYTTMEFVVKILIEIFKKSVVEATKIMYDVHRSGIGIAG 67
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+Y+Y+IA K+ Q M+ SR+ +PL+ +E++
Sbjct: 68 IYSYDIAATKITQAMSASRESGFPLKFSIEEE 99
>gi|258546117|ref|ZP_05706351.1| ATP-dependent Clp protease adaptor protein ClpS [Cardiobacterium
hominis ATCC 15826]
gi|258518542|gb|EEV87401.1| ATP-dependent Clp protease adaptor protein ClpS [Cardiobacterium
hominis ATCC 15826]
Length = 104
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
+FD ++ ++ P+ Y V+L+ND+YT M+FV+ VL +F K+ A+ IM +VH
Sbjct: 6 DFDPDTETLT-ADPELGEPRQYEVVLLNDDYTTMDFVVDVLMRYFNKNFAEAEDIMYQVH 64
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
QG G CG+Y ++IAE KVNQV+ ++R + YPL C++
Sbjct: 65 EQGSGVCGIYPFDIAESKVNQVIEHARANNYPLLCVLRP 103
>gi|297183971|gb|ADI20091.1| uncharacterized conserved protein [uncultured alpha proteobacterium
EB080_L06A09]
Length = 111
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 60/80 (75%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+Y+VLL+ND+YTPMEFV+H+L+ +F A +M+ VH +G+ GV++++IAE KV
Sbjct: 32 MYKVLLLNDDYTPMEFVVHILERYFGTSGSQAYELMMVVHQKGLAVVGVFSHDIAETKVM 91
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
QV +R+HQ+PLQC ME++
Sbjct: 92 QVTELARKHQHPLQCTMEKE 111
>gi|254468722|ref|ZP_05082128.1| ATP-dependent Clp protease adaptor protein ClpS [beta
proteobacterium KB13]
gi|207087532|gb|EDZ64815.1| ATP-dependent Clp protease adaptor protein ClpS [beta
proteobacterium KB13]
Length = 102
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 72/101 (71%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+A+ D+ + E + K +PK+++VL++ND++TPMEFV+ V+ F K + A IMLK
Sbjct: 1 MAQEDHKIIVEPKKKVKPNLPKMFKVLVLNDDFTPMEFVVDVIMKVFTKTEDEATRIMLK 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+H +G+ CG+Y YEIAE K+NQV+ +++ Q+PLQ I+E+
Sbjct: 61 IHTEGMAICGIYPYEIAETKMNQVLKLAKEAQHPLQSIIEK 101
>gi|116747493|ref|YP_844180.1| ATP-dependent Clp protease adaptor protein ClpS [Syntrophobacter
fumaroxidans MPOB]
gi|116696557|gb|ABK15745.1| ATP-dependent Clp protease adaptor protein ClpS [Syntrophobacter
fumaroxidans MPOB]
Length = 80
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 55/79 (69%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+YRVLL ND+YT MEFV+ +LQ+ F+K A IML VH G G CGV+ E+AE KV
Sbjct: 1 MYRVLLHNDDYTTMEFVVEILQSVFHKSPSEATRIMLLVHKSGTGVCGVFTAEVAETKVE 60
Query: 119 QVMNYSRQHQYPLQCIMEQ 137
V + +R++ +PLQC ME+
Sbjct: 61 LVHHLARKNGFPLQCSMEE 79
>gi|212703188|ref|ZP_03311316.1| hypothetical protein DESPIG_01230 [Desulfovibrio piger ATCC 29098]
gi|212673454|gb|EEB33937.1| hypothetical protein DESPIG_01230 [Desulfovibrio piger ATCC 29098]
Length = 106
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 61/102 (59%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ D+ K++ P Y VLL ND+YT M+FV+ VL + F+K E A IML
Sbjct: 3 DETWNEPGTDTATIVKKKIKEPDRYVVLLHNDDYTSMDFVVGVLCDIFHKTPEEATAIML 62
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH QGIG+CGVY +EIAE KV V +R +PL+C ME+
Sbjct: 63 AVHQQGIGQCGVYTHEIAETKVALVRRRARAAGFPLRCTMEK 104
>gi|302339654|ref|YP_003804860.1| ATP-dependent Clp protease adaptor protein ClpS [Spirochaeta
smaragdinae DSM 11293]
gi|301636839|gb|ADK82266.1| ATP-dependent Clp protease adaptor protein ClpS [Spirochaeta
smaragdinae DSM 11293]
Length = 103
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++F E R + R P +YRV+L+ND+YT M+FV+ V++ F+ E A IM
Sbjct: 1 MSDFRFGTKLEDRSQEQYREPPMYRVILLNDDYTTMDFVVKVIRQVFHHSSEEAVKIMFD 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH +G G G Y+ +IA K QV+ ++ ++PL+C +E
Sbjct: 61 VHKKGKGLVGCYSQDIAVTKQRQVLVMAKSEEFPLRCEIEPD 102
>gi|39931007|sp|Q7VFW0|CLPS_HELHP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
Length = 99
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 59/95 (62%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
E + + PK+YRVLL+ND++T M+FV +L F K + A I LK+H+ G
Sbjct: 3 HTAFETSLDTLLEEPKMYRVLLLNDDWTAMDFVARILMEVFDKTSDEATAITLKIHNDGK 62
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG+Y Y+IAE+K+ V ++QH YPL+ I E+
Sbjct: 63 GVCGIYTYDIAELKMQIVSQMAKQHGYPLRVITEE 97
>gi|254458761|ref|ZP_05072185.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacterales
bacterium GD 1]
gi|207084527|gb|EDZ61815.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacterales
bacterium GD 1]
Length = 99
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 63/95 (66%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
D E+ K++ PK Y+V L+ND+YT M+FVI +L F+K + A+ IML +H + G
Sbjct: 5 TDLELYNEVKLKHPKKYKVFLLNDDYTSMDFVIDILITIFHKSYSQAESIMLDIHKKERG 64
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CGVY +EIAE KV QV ++ + +PL+ +ME++
Sbjct: 65 LCGVYTHEIAETKVMQVRRKAKDNGFPLKAMMEEE 99
>gi|313683054|ref|YP_004060792.1| ATP-dependent clp protease adaptor protein clps [Sulfuricurvum
kujiense DSM 16994]
gi|313155914|gb|ADR34592.1| ATP-dependent Clp protease adaptor protein ClpS [Sulfuricurvum
kujiense DSM 16994]
Length = 99
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 60/96 (62%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ + + + PK Y V L+ND+YT M+FV+ +L F K+ A IM++VH G
Sbjct: 3 TQHEHSTQLENILEHPKQYNVFLLNDDYTSMDFVVDILMKLFRKNFHDAHRIMIEVHQNG 62
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY YE+AE KV+QV +R++ +PL+ IME+
Sbjct: 63 RGLCGVYPYEVAETKVHQVSILARENGFPLKAIMEE 98
>gi|238020305|ref|ZP_04600731.1| hypothetical protein GCWU000324_00183 [Kingella oralis ATCC 51147]
gi|237867285|gb|EEP68291.1| hypothetical protein GCWU000324_00183 [Kingella oralis ATCC 51147]
Length = 101
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/87 (47%), Positives = 56/87 (64%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+++ PK Y V L+ND+YTPM+FV+ VLQ+ F A IML+VHH G G CGVY
Sbjct: 12 KTQLAPPKKYGVFLLNDHYTPMDFVVDVLQDVFRLPESKAVSIMLEVHHHGKGLCGVYTR 71
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+IAE K QVM + + +PL C +E+
Sbjct: 72 DIAETKQQQVMQLADEAGHPLMCTIEE 98
>gi|316984242|gb|EFV63218.1| ATP-dependent Clp protease adaptor ClpS family protein [Neisseria
meningitidis H44/76]
Length = 183
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +IA+
Sbjct: 101 PPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQT 160
Query: 116 KVNQVMNYSRQHQYPLQCIMEQ 137
K QVM ++ +PLQCI+E+
Sbjct: 161 KQQQVMQRAKAEGHPLQCIVEE 182
>gi|114771314|ref|ZP_01448734.1| ATP-dependent Clp protease, adaptor protein ClpS [alpha
proteobacterium HTCC2255]
gi|114548239|gb|EAU51126.1| ATP-dependent Clp protease, adaptor protein ClpS [alpha
proteobacterium HTCC2255]
Length = 120
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 60/80 (75%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+Y+V+L+ND+YTPMEFV+H+L+ +F A +M+ VH +G+ GV++++IAE KV
Sbjct: 41 MYKVILLNDDYTPMEFVVHILERYFGTTGSQAYELMMLVHQKGLAVVGVFSHDIAETKVM 100
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
QV +++HQ+PLQC ME++
Sbjct: 101 QVTELAQKHQHPLQCTMEKE 120
>gi|148653394|ref|YP_001280487.1| ATP-dependent Clp protease adaptor protein ClpS [Psychrobacter sp.
PRwf-1]
gi|148572478|gb|ABQ94537.1| ATP-dependent Clp protease adaptor protein ClpS [Psychrobacter sp.
PRwf-1]
Length = 140
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 52 SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
++ P +Y V++ ND+YTPMEFV++VLQ+ F + + A IML +H+QG G G+Y +
Sbjct: 51 PEITEPPMYAVVMYNDDYTPMEFVVYVLQSEFRHNMDKAVEIMLNIHNQGRGIAGIYPKD 110
Query: 112 IAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IAE K +V +R+ YPL +E
Sbjct: 111 IAETKAKKVNQTARKEGYPLLTQIEP 136
>gi|313201916|ref|YP_004040574.1| ATP-dependent clp protease adaptor protein clps [Methylovorus sp.
MP688]
gi|312441232|gb|ADQ85338.1| ATP-dependent Clp protease adaptor protein ClpS [Methylovorus sp.
MP688]
Length = 77
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 60/75 (80%)
Query: 63 LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+L+ND+YTPMEFV+ V+Q FF K E A IMLKVH +G G CGVY ++IAE KVNQV+
Sbjct: 2 ILLNDDYTPMEFVVEVIQRFFNKSREQATQIMLKVHTEGAGICGVYPHDIAETKVNQVLG 61
Query: 123 YSRQHQYPLQCIMEQ 137
Y+R++Q+PLQC ME+
Sbjct: 62 YAREYQHPLQCAMEE 76
>gi|317051275|ref|YP_004112391.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfurispirillum
indicum S5]
gi|316946359|gb|ADU65835.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfurispirillum
indicum S5]
Length = 100
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 54/92 (58%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E V+ P+ Y VLL+ND+++ +FV+ VL F K + A I VHH G G C
Sbjct: 8 IEEELDLAVKEPRPYMVLLLNDDFSTWDFVVEVLVRVFRKTRDDADKITYHVHHNGQGVC 67
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G+Y +EIA+ KV QV ++ YPL+C+M +
Sbjct: 68 GIYPFEIAQTKVQQVHELAKSRGYPLRCVMRE 99
>gi|34556771|ref|NP_906586.1| hypothetical protein WS0336 [Wolinella succinogenes DSM 1740]
gi|39930938|sp|Q7MSL3|CLPS_WOLSU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|34482485|emb|CAE09486.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 102
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 65/95 (68%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
++E++ V P+ ++V+L+ND+Y+ M+FV+ VL F K+ + A +MLKVH++G
Sbjct: 7 DFETEIKEEIIVAEPRRFKVILLNDDYSTMDFVVEVLMVIFNKNFDEALGVMLKVHNEGR 66
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG+Y Y++AE KV+QV + + +PL+ I+E+
Sbjct: 67 GVCGIYPYDVAETKVSQVKKKAEESGFPLRAILEE 101
>gi|253828028|ref|ZP_04870913.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
canadensis MIT 98-5491]
gi|253511434|gb|EES90093.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
canadensis MIT 98-5491]
Length = 101
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 64/96 (66%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
N +++ K++ P Y+V+L+ND+YT +FVI +LQ F+K E + +ML++HH G
Sbjct: 5 NQIENATETLEKLQEPIRYKVILLNDDYTTQDFVIEILQKVFHKGFEESLNLMLQIHHNG 64
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CG+Y Y+IAE K QV +++ Q+PL+ I+E+
Sbjct: 65 RGMCGIYPYDIAETKAMQVRKMAKEKQFPLRAILEK 100
>gi|293606229|ref|ZP_06688592.1| ATP-dependent Clp protease adaptor protein ClpS [Achromobacter
piechaudii ATCC 43553]
gi|292815376|gb|EFF74494.1| ATP-dependent Clp protease adaptor protein ClpS [Achromobacter
piechaudii ATCC 43553]
Length = 104
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/98 (51%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 41 DNCLDSEVRFSSKVRVPK-LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D D V + P +Y+VLL+ND+YTPMEFV+ VLQ FF K+HE A IML+VHH
Sbjct: 6 DTQHDLAVEKAPARAAPPPMYQVLLLNDDYTPMEFVVKVLQKFFNKNHEEATRIMLQVHH 65
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G G CGVY ++A ++ QV Y+R Q+PLQC+ME
Sbjct: 66 EGRGVCGVYPRDLAATRIAQVGQYARARQHPLQCVMEP 103
>gi|71066054|ref|YP_264781.1| ATP-dependent Clp protease adapter protein [Psychrobacter arcticus
273-4]
gi|71039039|gb|AAZ19347.1| probable ATP-dependent Clp protease adapter protein [Psychrobacter
arcticus 273-4]
Length = 138
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 18 ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRF---SSKVRVPKLYRVLLVNDNYTPMEF 74
++S M + E D + +V P +Y V++ NDNYTPMEF
Sbjct: 12 AAPIISDWHFPHMPMRLAQVGEPDGETTPQADVLVAEPEVAKPPMYAVVMYNDNYTPMEF 71
Query: 75 VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
V+++LQ+ F ++A IML +H+ G G+Y +IAE K +V + + + YPL
Sbjct: 72 VVYILQSEFRHSMDSAVEIMLTIHNSSKGIAGIYPKDIAETKAKKVNSLAHREGYPLLTQ 131
Query: 135 MEQ 137
+E
Sbjct: 132 IEP 134
>gi|311107314|ref|YP_003980167.1| ATP-dependent Clp protease adaptor protein ClpS [Achromobacter
xylosoxidans A8]
gi|310762003|gb|ADP17452.1| ATP-dependent Clp protease adaptor protein ClpS [Achromobacter
xylosoxidans A8]
gi|317407691|gb|EFV87624.1| ATP-dependent Clp protease adapter protein ClpS [Achromobacter
xylosoxidans C54]
Length = 104
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/98 (51%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 41 DNCLDSEVRFSSKVRVPK-LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D D V + P +Y+VLL+ND+YTPMEFV+ VLQ FF K+HE A IML+VHH
Sbjct: 6 DTQHDLAVEKAPARAAPPPMYQVLLLNDDYTPMEFVVKVLQKFFNKNHEEATRIMLQVHH 65
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+G G CGVY ++A ++ QV Y+R Q+PLQC+ME
Sbjct: 66 EGRGVCGVYPRDLAATRIAQVAQYARARQHPLQCVMEP 103
>gi|315179860|gb|ADT86774.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio furnissii
NCTC 11218]
Length = 80
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 57/79 (72%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+Y V+L ND+YTPM+FVI +L+ FF D E A +MLKVH++G CG + E+AE KV
Sbjct: 1 MYNVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAEVAETKVA 60
Query: 119 QVMNYSRQHQYPLQCIMEQ 137
QV YSR++++PL C ME+
Sbjct: 61 QVTMYSRENEHPLLCTMER 79
>gi|307718944|ref|YP_003874476.1| ATP-dependent Clp protease adaptor protein clpS [Spirochaeta
thermophila DSM 6192]
gi|306532669|gb|ADN02203.1| ATP-dependent Clp protease adaptor protein clpS [Spirochaeta
thermophila DSM 6192]
Length = 134
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+Y V+L+ND++TPMEFV+ +L + F+KD A IML VH G G+ Y Y+IA KV
Sbjct: 55 MYWVVLLNDDFTPMEFVVDILVDIFHKDRVEATKIMLTVHRTGKGKVATYPYDIAVTKVA 114
Query: 119 QVMNYSRQHQYPLQCIMEQ 137
QV +R+ +PL+C +E+
Sbjct: 115 QVHRRAREAGHPLRCTVEK 133
>gi|255065179|ref|ZP_05317034.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria sicca
ATCC 29256]
gi|255050600|gb|EET46064.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria sicca
ATCC 29256]
Length = 103
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 37 IAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ + +S+ K PK Y V L+ND+YT MEFV+ +L F E A +ML
Sbjct: 1 MNNPNTHHESDTLLSDQKTAPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVML 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VHH+G G CG Y +IA+ K QVM ++ +PLQCI+E+
Sbjct: 61 LVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEE 102
>gi|296273990|ref|YP_003656621.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
nitrofigilis DSM 7299]
gi|296098164|gb|ADG94114.1| ATP-dependent Clp protease adaptor protein ClpS [Arcobacter
nitrofigilis DSM 7299]
Length = 99
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/97 (45%), Positives = 62/97 (63%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
N + E+ +V+ PK Y+VLL+NDNY+ M+FVI +L F K + A IML +H+ G
Sbjct: 3 NEFEIELNDDLEVQEPKKYKVLLLNDNYSTMDFVIDILVKIFKKTTDEATVIMLNIHNNG 62
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG Y +EIA KV QV N +RQ +PL+ IME++
Sbjct: 63 KEVCGTYTHEIASTKVMQVKNLARQKGFPLKAIMEEE 99
>gi|161869772|ref|YP_001598940.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis 053442]
gi|161595325|gb|ABX72985.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 153
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +IA+
Sbjct: 71 PPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQT 130
Query: 116 KVNQVMNYSRQHQYPLQCIMEQ 137
K QVM ++ +PLQCI+E+
Sbjct: 131 KQQQVMQRAKAEGHPLQCIVEE 152
>gi|296315334|ref|ZP_06865275.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
polysaccharea ATCC 43768]
gi|296837710|gb|EFH21648.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
polysaccharea ATCC 43768]
Length = 100
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 53/85 (62%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
K PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +I
Sbjct: 15 KTLPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDI 74
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A+ K QVM ++ +PLQCI+E+
Sbjct: 75 AQTKQQQVMQRAKAEGHPLQCIVEE 99
>gi|269468372|gb|EEZ80037.1| hypothetical protein Sup05_1280 [uncultured SUP05 cluster
bacterium]
Length = 99
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 64/92 (69%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
KV+ P ++VLL+ND+YT M+FV+ VL FF K E A+ IMLK+H +G G C
Sbjct: 5 LAQNTKPKVKKPNRFQVLLLNDDYTTMDFVVEVLTKFFSKSEEAAQAIMLKIHLEGEGIC 64
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GVY ++IA+ KV+QV+++SR+ + PL C++ +
Sbjct: 65 GVYPHDIAQTKVSQVIDFSRKKEQPLMCVIRE 96
>gi|329120145|ref|ZP_08248815.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
bacilliformis ATCC BAA-1200]
gi|327463676|gb|EGF09994.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
bacilliformis ATCC BAA-1200]
Length = 101
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ K+R P+ Y V L+ND+YT M+FV VL F+ + A +ML VHH+G G CG +
Sbjct: 11 ESAIKLRPPRKYGVFLLNDDYTTMDFVAQVLTEVFFLSEDRAFAVMLLVHHEGKGLCGTF 70
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
++A+ K QV + +PL+C +E+
Sbjct: 71 TRDVAQTKQAQVHRRAADAGFPLKCTIEE 99
>gi|242279301|ref|YP_002991430.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
salexigens DSM 2638]
gi|242122195|gb|ACS79891.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
salexigens DSM 2638]
Length = 102
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 66/101 (65%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+AE+ +S+V +++ P+ +RVLL ND+YT MEFV+ VL F K E + IML+
Sbjct: 1 MAEYKENFESDVLLEDELKEPRKFRVLLHNDDYTSMEFVVAVLMQVFRKTEEESTKIMLQ 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH+ G+G CGVY E+AE +V V ++Q YPL+C +E+
Sbjct: 61 VHNDGVGVCGVYTAEVAETRVEMVKQLAQQAGYPLKCTIEE 101
>gi|261381146|ref|ZP_05985719.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria subflava
NJ9703]
gi|284795952|gb|EFC51299.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria subflava
NJ9703]
Length = 103
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
D+ D+ + + PK Y V L+ND+YT MEFV+ +L F E A +ML
Sbjct: 2 NHPNTDHQSDTLL-SDINTQPPKRYGVFLLNDDYTTMEFVVEILTEVFMLTQEQAVAVML 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VHH+G G CG Y +IA+ K +QVM ++ +PL+CI+E+
Sbjct: 61 LVHHEGKGLCGTYTRDIAQTKQHQVMERAKAEGHPLKCIVEE 102
>gi|261364236|ref|ZP_05977119.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria mucosa
ATCC 25996]
gi|288567473|gb|EFC89033.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria mucosa
ATCC 25996]
Length = 103
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 37 IAEFDNCLDSEVRF-SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ + +S+ K PK Y V L+ND+YT MEFV+ +L F E A +ML
Sbjct: 1 MNNPNTHHESDTLLSDQKTAPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGEEQAVAVML 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VHH+G G CG Y +IA+ K QVM ++ +PLQCI+E+
Sbjct: 61 LVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEE 102
>gi|82523955|emb|CAI78766.1| ATP-dependent Clp protease adaptor protein ClpS [uncultured epsilon
proteobacterium]
Length = 99
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 62/97 (63%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ E + ++ PK Y+V ++ND+YT M+FV+ VL F+K +E ++ IML+VH +
Sbjct: 3 TNTELEPVEKTLLQYPKKYKVFILNDDYTSMDFVVDVLMTIFHKSYEESEAIMLEVHKKD 62
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G CGVY +EIAE KV QV +R +PL+ ME++
Sbjct: 63 RGLCGVYTHEIAETKVMQVHKKARDSGFPLKSTMEEE 99
>gi|256829859|ref|YP_003158587.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfomicrobium
baculatum DSM 4028]
gi|256579035|gb|ACU90171.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfomicrobium
baculatum DSM 4028]
Length = 104
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 59/101 (58%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
D ++ +++ P+ ++VLL ND+YT M+FV+ VL N F K + IM+
Sbjct: 3 EPFEVPGSDPDIMVEDQLQEPRQFKVLLHNDDYTSMDFVVEVLMNVFGKSESESFAIMMS 62
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH +GIG CG+Y E+AE KV V +R +PL+C ME+
Sbjct: 63 VHEKGIGLCGIYTAEVAETKVQLVHQMARARSFPLRCSMEE 103
>gi|32267064|ref|NP_861096.1| hypothetical protein HH1565 [Helicobacter hepaticus ATCC 51449]
gi|32263116|gb|AAP78162.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 87
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ PK+YRVLL+ND++T M+FV +L F K + A I LK+H+ G G CG+Y Y+IA
Sbjct: 2 LEEPKMYRVLLLNDDWTAMDFVARILMEVFDKTSDEATAITLKIHNDGKGVCGIYTYDIA 61
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
E+K+ V ++QH YPL+ I E+
Sbjct: 62 ELKMQIVSQMAKQHGYPLRVITEE 85
>gi|254417766|ref|ZP_05031490.1| ATP-dependent Clp protease adaptor protein ClpS [Brevundimonas sp.
BAL3]
gi|196183943|gb|EDX78919.1| ATP-dependent Clp protease adaptor protein ClpS [Brevundimonas sp.
BAL3]
Length = 77
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 63 LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
L++ND+Y+PMEFV++VL+ FF K E A IML VH G+G CGV+ YE+AE KV QV+
Sbjct: 2 LILNDDYSPMEFVVYVLERFFQKSREEATRIMLHVHQHGVGVCGVFTYEVAETKVAQVIE 61
Query: 123 YSRQHQYPLQCIMEQK 138
+R+HQ+PLQC ME+
Sbjct: 62 TARRHQHPLQCTMEKD 77
>gi|146329659|ref|YP_001209565.1| ATP-dependent Clp protease adaptor protein ClpS [Dichelobacter
nodosus VCS1703A]
gi|146233129|gb|ABQ14107.1| ATP-dependent Clp protease adaptor protein ClpS [Dichelobacter
nodosus VCS1703A]
Length = 104
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 56/88 (63%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
S V P L+ V+L ND+YT M+FVI V+ FFY+ E A+ +MLKVH +G G++
Sbjct: 17 KSDVAQPDLFEVVLHNDDYTTMDFVIEVICRFFYQTAEVAEKLMLKVHFEGSAVVGIFPR 76
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+IAE K QV+ Y+R+ +PL C + +
Sbjct: 77 DIAETKARQVIAYAREKGHPLMCSIRPQ 104
>gi|330814167|ref|YP_004358406.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Pelagibacter sp. IMCC9063]
gi|327487262|gb|AEA81667.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Pelagibacter sp. IMCC9063]
Length = 101
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 58/90 (64%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
+ + S+K P Y V+L+ND++T MEFVI VL FF + AK +MLK+H G CG
Sbjct: 10 KRKLSTKTTKPPYYNVILLNDDFTTMEFVIQVLIIFFKMTNNKAKNVMLKIHEDGSAICG 69
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
Y +IA+ + V NY++Q+ +PL+CIME
Sbjct: 70 TYTKDIAKTLTSLVNNYAKQNLFPLKCIME 99
>gi|206889423|ref|YP_002249321.1| ATP-dependent Clp protease adaptor protein ClpS
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741361|gb|ACI20418.1| ATP-dependent Clp protease adaptor protein ClpS
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 101
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
+ + + P+LYRV L+ND+YT M+FV++VL F K A IML VH G G G
Sbjct: 8 DEKEEISIDRPELYRVYLLNDDYTTMDFVVYVLMTIFDKSKVEATAIMLHVHKHGKGLAG 67
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+Y EIAE KV QV + +R +PL+C +E+
Sbjct: 68 IYPKEIAETKVYQVESLARAKGFPLKCSIER 98
>gi|261400156|ref|ZP_05986281.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
lactamica ATCC 23970]
gi|269210155|gb|EEZ76610.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
lactamica ATCC 23970]
Length = 112
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +I
Sbjct: 27 DTQPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDI 86
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A+ K QVM+ ++ +PLQCI+E+
Sbjct: 87 AQTKQRQVMDMAKAEGHPLQCIVEE 111
>gi|15895099|ref|NP_348448.1| hypothetical protein CA_C1823 [Clostridium acetobutylicum ATCC 824]
gi|21542321|sp|Q97I31|CLPS_CLOAB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|15024798|gb|AAK79788.1|AE007691_6 Uncharacterized conserved protein [Clostridium acetobutylicum ATCC
824]
gi|325509237|gb|ADZ20873.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
Length = 101
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 40/94 (42%), Positives = 55/94 (58%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D ++ K+ PK+Y+V+L ND+YT MEFVI +L N F K A I VH G
Sbjct: 5 TSFDENIKQKHKIEKPKMYKVILHNDDYTTMEFVIEILINVFNKVPANAVKITFDVHKNG 64
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
IG GVY Y+IA K+N+V + ++ YPL+ M
Sbjct: 65 IGIAGVYPYDIAATKINEVKKLAYKNGYPLKLTM 98
>gi|93006502|ref|YP_580939.1| ATP-dependent Clp protease adaptor protein ClpS [Psychrobacter
cryohalolentis K5]
gi|92394180|gb|ABE75455.1| ATP-dependent Clp protease adaptor protein ClpS [Psychrobacter
cryohalolentis K5]
Length = 135
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 18 ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRF---SSKVRVPKLYRVLLVNDNYTPMEF 74
+ S M + E + + +V P +Y V++ NDNYTPMEF
Sbjct: 9 ATPITSDWHFPHIPMRLAQVGEPEGETAPQADVLVAEPEVAKPPMYAVVMYNDNYTPMEF 68
Query: 75 VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCI 134
V+++LQ+ F ++A IML +H+ G G+Y +IAE K +V + + + YPL
Sbjct: 69 VVYILQSEFRHSMDSAVEIMLTIHNSSKGIAGIYPKDIAETKAKKVNSLAHREGYPLLTQ 128
Query: 135 MEQ 137
+E
Sbjct: 129 IEP 131
>gi|261377437|ref|ZP_05982010.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria cinerea
ATCC 14685]
gi|269146155|gb|EEZ72573.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria cinerea
ATCC 14685]
Length = 100
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +IA+
Sbjct: 18 PPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQT 77
Query: 116 KVNQVMNYSRQHQYPLQCIMEQ 137
K QVM ++ +PLQCI+E+
Sbjct: 78 KQQQVMQRAKAEGHPLQCIVEE 99
>gi|303249375|ref|ZP_07335601.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
fructosovorans JJ]
gi|302489213|gb|EFL49178.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
fructosovorans JJ]
Length = 104
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
Y+VLL ND+YT MEFVI VL F+K+ A IML VH+ G+G CG Y E+AE+KV+
Sbjct: 26 YKVLLHNDDYTTMEFVIQVLVGVFHKNENEATQIMLNVHNNGVGVCGEYTAEVAELKVSL 85
Query: 120 VMNYSRQHQYPLQCIMEQ 137
V ++++ YPL+C ME+
Sbjct: 86 VHRLAKENGYPLKCSMEE 103
>gi|222149341|ref|YP_002550298.1| ATP-dependent Clp protease adaptor [Agrobacterium vitis S4]
gi|221736325|gb|ACM37288.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 103
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+V+ K+ P+LY+V+L ND+YTP EFV VL+ F ET +M+ H G
Sbjct: 7 VGQPKVKTRPKLEQPRLYKVILTNDDYTPREFVTIVLKAVFRMSEETGNRVMMTAHRFGS 66
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
V +IAE K + + +++ +PL +E +
Sbjct: 67 AVVVVCTRDIAETKSTEANDLAKEAGFPLLFTIEPE 102
>gi|194098152|ref|YP_002001200.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae NCCP11945]
gi|291044246|ref|ZP_06569955.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae DGI2]
gi|293399443|ref|ZP_06643596.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae F62]
gi|193933442|gb|ACF29266.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae NCCP11945]
gi|291011140|gb|EFE03136.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae DGI2]
gi|291610012|gb|EFF39134.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae F62]
gi|317163877|gb|ADV07418.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae TCDC-NG08107]
Length = 137
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +IA+
Sbjct: 55 PPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLSVHHEGKGLCGTYTRDIAQT 114
Query: 116 KVNQVMNYSRQHQYPLQCIMEQ 137
K QVM ++ +PLQCI+E+
Sbjct: 115 KQQQVMQRAKAEGHPLQCIVEE 136
>gi|313668693|ref|YP_004048977.1| atp-dependent Clp protease adaptor protein ClpS [Neisseria
lactamica ST-640]
gi|313006155|emb|CBN87616.1| atp-dependent Clp protease adaptor protein ClpS [Neisseria
lactamica 020-06]
Length = 128
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +I
Sbjct: 43 DTQPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDI 102
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A+ K QVM+ ++ +PLQCI+E+
Sbjct: 103 AQTKQRQVMDRAKAEGHPLQCIIEE 127
>gi|161610776|ref|NP_946554.2| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
CGA009]
gi|192289806|ref|YP_001990411.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
TIE-1]
gi|67460483|sp|Q6NAI2|CLPS1_RHOPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
gi|192283555|gb|ACE99935.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris TIE-1]
Length = 103
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 56/102 (54%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
++ D ++ + KV PKL++V+LVND+YTP EFV+ VL+ F + A +ML
Sbjct: 1 MSNIDLKPKTKAKAKIKVERPKLHKVILVNDDYTPREFVVSVLKGEFRMTEDQATKVMLT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H +G+ GV+ ++AE K + + R YPL E +
Sbjct: 61 AHQRGVCVVGVFTKDVAETKATRATDAGRAKGYPLLFTTEPE 102
>gi|254804708|ref|YP_003082929.1| putative ATP-dependent Clp protease adaptor protein [Neisseria
meningitidis alpha14]
gi|254668250|emb|CBA05092.1| putative ATP-dependent Clp protease adaptor protein [Neisseria
meningitidis alpha14]
gi|308389011|gb|ADO31331.1| putative ATP-dependent Clp protease adaptor protein clpS [Neisseria
meningitidis alpha710]
gi|325127944|gb|EGC50846.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis N1568]
gi|325129979|gb|EGC52775.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis OX99.30304]
Length = 100
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 52/88 (59%)
Query: 50 FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYA 109
PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y
Sbjct: 12 RRLNTLPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYT 71
Query: 110 YEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+IA+ K QVM ++ +PLQCI+E+
Sbjct: 72 RDIAQTKQQQVMQRAKAEGHPLQCIVEE 99
>gi|57167994|ref|ZP_00367133.1| Uncharacterized ACR, COG2127 [Campylobacter coli RM2228]
gi|305431855|ref|ZP_07401022.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter coli
JV20]
gi|57020368|gb|EAL57037.1| Uncharacterized ACR, COG2127 [Campylobacter coli RM2228]
gi|304444939|gb|EFM37585.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter coli
JV20]
Length = 96
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 62/94 (65%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+V SK++ PK+++V+L+ND+ T M+FVI VL N FY D ETA IML+VH G G
Sbjct: 3 KLKVLEKSKLKEPKMFKVILLNDDVTTMDFVIEVLINIFYHDFETANKIMLEVHLNGSGI 62
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA K +V + ++ +PLQ +E++
Sbjct: 63 CGIYTQEIALSKQKKVSDAAKLANFPLQTRVEEE 96
>gi|325267632|ref|ZP_08134284.1| ATP-dependent Clp protease adaptor protein ClpS [Kingella
denitrificans ATCC 33394]
gi|324980982|gb|EGC16642.1| ATP-dependent Clp protease adaptor protein ClpS [Kingella
denitrificans ATCC 33394]
Length = 100
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
++ K+ PK Y V+L+ND+YTPM+FV+ VL F +HE A +ML++HH+G
Sbjct: 3 QKTEKIIQRQKLTPPKRYAVVLLNDHYTPMDFVVAVLTEIFALNHEKAVAVMLQIHHEGS 62
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G CGVY +IAE K QV+ + + +PL CI+++
Sbjct: 63 GVCGVYTRDIAETKRQQVLQAADEAGHPLMCIVQE 97
>gi|315929892|gb|EFV09052.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Campylobacter jejuni subsp. jejuni 305]
Length = 96
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 62/94 (65%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
++ +K+ PK+Y+V+L+ND+ T M+FVI +L N F+++ E A ML++HH G G
Sbjct: 3 KTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNPEKASQTMLEIHHNGSGI 62
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA K +V++ ++ +PLQ +E++
Sbjct: 63 CGIYTQEIALSKQKKVIDAAKLANFPLQAKVEEE 96
>gi|304387855|ref|ZP_07370029.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis ATCC 13091]
gi|304338120|gb|EFM04256.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis ATCC 13091]
Length = 112
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 57/111 (51%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M R + G + PK Y V L+ND+YT MEFV+ +L F
Sbjct: 1 MPSERGFQMGHTMTAQHQSDTLLRRLNTLPPKRYGVFLLNDDYTTMEFVVEILTEIFMLG 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E A +ML VHH+G G CG Y +IA+ K QVM ++ +PLQCI+E+
Sbjct: 61 QEQAVAVMLLVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEE 111
>gi|154148611|ref|YP_001406669.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
hominis ATCC BAA-381]
gi|153804620|gb|ABS51627.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
hominis ATCC BAA-381]
Length = 97
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E + +K+ +PK+YRV+L+ND+ T M+FV+ +L F K + A IML +H G G CG
Sbjct: 6 ESQTKTKIFIPKIYRVILLNDDVTTMDFVVMILMEIFEKTRDEAINIMLHIHKNGSGICG 65
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
Y EIAE K ++V +++ +PL C +E++
Sbjct: 66 SYIKEIAETKKDEVKMLAKKANFPLVCEIEEE 97
>gi|153952414|ref|YP_001397780.1| hypothetical protein JJD26997_0615 [Campylobacter jejuni subsp.
doylei 269.97]
gi|166214731|sp|A7H2Q0|CLPS_CAMJD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|152939860|gb|ABS44601.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 96
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 63/95 (66%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
L ++ +K+ PK+Y+V+L+ND+ T M+FVI +L N F+++ E A ML++HH G G
Sbjct: 2 LKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSG 61
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA K +V++ ++ +PLQ +E++
Sbjct: 62 ICGIYTQEIALSKQKKVIDAAKLANFPLQAKVEEE 96
>gi|146339195|ref|YP_001204243.1| ATP-dependent Clp protease adaptor [Bradyrhizobium sp. ORS278]
gi|146192001|emb|CAL76006.1| ATP-dependent Clp protease adaptor protein clpS 2 [Bradyrhizobium
sp. ORS278]
Length = 115
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 53/98 (54%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + + +KV P+LY+V+LVND++TP +FV+ +L+ F + A +M+ H
Sbjct: 17 DAVTKPKTKVRTKVERPRLYKVILVNDDFTPRDFVVMILKAEFRMTEDQAYKVMITAHKL 76
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+ V+ ++AE K + + R YPL +E +
Sbjct: 77 GVCVVAVFTKDVAETKATRATDAGRAKGYPLLFTIEPE 114
>gi|309379405|emb|CBX21972.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 100
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +I
Sbjct: 15 DTQPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDI 74
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A+ K QVM+ ++ +PLQCI+E+
Sbjct: 75 AQTKQRQVMDRAKAEGHPLQCIVEE 99
>gi|300855650|ref|YP_003780634.1| ATP-dependent protease adaptor protein ClpS [Clostridium
ljungdahlii DSM 13528]
gi|300435765|gb|ADK15532.1| ATP-dependent protease adaptor protein ClpS [Clostridium
ljungdahlii DSM 13528]
Length = 99
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 55/93 (59%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
+ + K++ P +Y+V++ ND+YT MEFV+ VL F K A IM VH +GIG
Sbjct: 7 LKQKPQLKIKPPSMYKVIIHNDDYTTMEFVVEVLIKIFEKSAVEATKIMYDVHRRGIGVA 66
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GVY Y+IA K+ Q + + +PL+ ME++
Sbjct: 67 GVYVYDIAATKIMQAVKMAESSGFPLKFSMEEE 99
>gi|86748339|ref|YP_484835.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
HaA2]
gi|86571367|gb|ABD05924.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris HaA2]
Length = 101
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+ + K+ PKLY+V+LVND++TP +FV+ +L++ F E A +ML H
Sbjct: 2 SNVVTKPTAKAKPKLERPKLYKVILVNDDFTPRDFVVMILKSEFRMTEEQAYKVMLTAHQ 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G+ V+ +IAE K + + R YPL E +
Sbjct: 62 RGVCVVAVFTKDIAETKATRATDAGRAKGYPLLFTTEPE 100
>gi|57237989|ref|YP_179238.1| hypothetical protein CJE1250 [Campylobacter jejuni RM1221]
gi|86150412|ref|ZP_01068638.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88596781|ref|ZP_01100018.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|218562721|ref|YP_002344500.1| ATP-dependent Clp protease adaptor protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|12230833|sp|Q9PNI7|CLPS_CAMJE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|67460170|sp|Q5HTZ7|CLPS_CAMJR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|57166793|gb|AAW35572.1| conserved hypothetical protein [Campylobacter jejuni RM1221]
gi|85839237|gb|EAQ56500.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88191622|gb|EAQ95594.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|112360427|emb|CAL35224.1| ATP-dependent Clp protease adaptor protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|284926336|gb|ADC28688.1| ATP-dependent Clp protease adaptor protein [Campylobacter jejuni
subsp. jejuni IA3902]
gi|315058548|gb|ADT72877.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
jejuni subsp. jejuni S3]
Length = 96
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 62/94 (65%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
++ +K+ PK+Y+V+L+ND+ T M+FVI +L N F+++ E A ML++HH G G
Sbjct: 3 KTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGI 62
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA K +VM+ ++ +PLQ +E++
Sbjct: 63 CGIYTQEIALSKQKKVMDAAKLANFPLQAKVEEE 96
>gi|225075508|ref|ZP_03718707.1| hypothetical protein NEIFLAOT_00521 [Neisseria flavescens
NRL30031/H210]
gi|241758489|ref|ZP_04756608.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
flavescens SK114]
gi|319637941|ref|ZP_07992707.1| ATP-dependent Clp protease adapter protein ClpS [Neisseria mucosa
C102]
gi|224953143|gb|EEG34352.1| hypothetical protein NEIFLAOT_00521 [Neisseria flavescens
NRL30031/H210]
gi|241321324|gb|EER57472.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
flavescens SK114]
gi|317401096|gb|EFV81751.1| ATP-dependent Clp protease adapter protein ClpS [Neisseria mucosa
C102]
Length = 103
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
D+ D+ + + PK Y V L+ND+YT MEFV+ +L F E A +ML
Sbjct: 2 NHPNTDHQSDTLL-SDINTQPPKRYGVFLLNDDYTTMEFVVEILTEVFMLAQEQAVAVML 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VHH+G G CG Y +IA+ K +QVM ++ +PL+CI+E+
Sbjct: 61 LVHHEGKGLCGTYTRDIAQTKQHQVMERAKAEGHPLKCIVEE 102
>gi|86152758|ref|ZP_01070963.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
jejuni subsp. jejuni HB93-13]
gi|121612672|ref|YP_001000785.1| hypothetical protein CJJ81176_1125 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157415368|ref|YP_001482624.1| hypothetical protein C8J_1048 [Campylobacter jejuni subsp. jejuni
81116]
gi|167005700|ref|ZP_02271458.1| hypothetical protein Cjejjejuni_05870 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|283956504|ref|ZP_06373984.1| hypothetical protein C1336_000250281 [Campylobacter jejuni subsp.
jejuni 1336]
gi|166214732|sp|A1W094|CLPS_CAMJJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|172047149|sp|A8FMG0|CLPS_CAMJ8 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|85843643|gb|EAQ60853.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
jejuni subsp. jejuni HB93-13]
gi|87249258|gb|EAQ72219.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|157386332|gb|ABV52647.1| hypothetical protein C8J_1048 [Campylobacter jejuni subsp. jejuni
81116]
gi|283792224|gb|EFC31013.1| hypothetical protein C1336_000250281 [Campylobacter jejuni subsp.
jejuni 1336]
gi|307748009|gb|ADN91279.1| ATP-dependent Clp protease adapter protein clpS [Campylobacter
jejuni subsp. jejuni M1]
gi|315932245|gb|EFV11188.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Campylobacter jejuni subsp. jejuni 327]
Length = 96
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 62/94 (65%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
++ +K+ PK+Y+V+L+ND+ T M+FVI +L N F+++ E A ML++HH G G
Sbjct: 3 KTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGI 62
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA K +V++ ++ +PLQ +E++
Sbjct: 63 CGIYTQEIALSKQKKVIDAAKLANFPLQAKVEEE 96
>gi|108758335|ref|YP_634160.1| ATP-dependent Clp protease adaptor protein ClpS [Myxococcus xanthus
DK 1622]
gi|122387659|sp|Q1CZL3|CLPS_MYXXD RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|108462215|gb|ABF87400.1| ATP-dependent Clp protease adaptor protein ClpS [Myxococcus xanthus
DK 1622]
Length = 107
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + +E K++ P LY+VLL NDNYT EFV+ VL+ F+K A IML VH+
Sbjct: 8 DTSVITESAPKQKLKKPPLYKVLLHNDNYTTREFVVAVLKEVFHKSETDAVQIMLHVHYN 67
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+G GVY Y++AE K+ V ++++ PL+ ME +
Sbjct: 68 GVGVAGVYTYDVAETKIQTVEAAAQENDMPLRLSMEPE 105
>gi|86150870|ref|ZP_01069086.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|85842040|gb|EAQ59286.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
260.94]
Length = 96
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 62/94 (65%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
++ +K+ PK+Y+V+L+ND+ T M+FVI +L N F+++ E A MLK+HH G G
Sbjct: 3 KTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLKIHHNGSGI 62
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA K +V++ ++ +PLQ +E++
Sbjct: 63 CGIYTQEIALSKQKKVIDAAKLANFPLQVKVEEE 96
>gi|42527626|ref|NP_972724.1| hypothetical protein TDE2123 [Treponema denticola ATCC 35405]
gi|67460342|sp|Q73KU4|CLPS_TREDE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|41818454|gb|AAS12643.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
gi|325474421|gb|EGC77608.1| ATP-dependent Clp protease adaptor protein ClpS [Treponema
denticola F0402]
Length = 101
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 57/88 (64%)
Query: 50 FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYA 109
S K P+ YRV+L+ND++TPM+FV+ VL + F K E A+ +M KVH G G+Y
Sbjct: 13 ISEKFIEPENYRVILLNDDFTPMDFVVAVLISIFNKSQEEAETLMFKVHKTGQASVGIYV 72
Query: 110 YEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
Y+IA K QV+ ++ + +PLQC +E+
Sbjct: 73 YDIATTKCFQVLTAAKNNNFPLQCKVEK 100
>gi|59800852|ref|YP_207564.1| hypothetical protein NGO0409 [Neisseria gonorrhoeae FA 1090]
gi|67460149|sp|Q5F9I5|CLPS_NEIG1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|59717747|gb|AAW89152.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
Length = 100
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +IA+
Sbjct: 18 PPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLSVHHEGKGLCGTYTRDIAQT 77
Query: 116 KVNQVMNYSRQHQYPLQCIMEQ 137
K QVM ++ +PLQCI+E+
Sbjct: 78 KQQQVMQRAKAEGHPLQCIVEE 99
>gi|149195297|ref|ZP_01872385.1| hypothetical protein CMTB2_00354 [Caminibacter mediatlanticus TB-2]
gi|149134561|gb|EDM23049.1| hypothetical protein CMTB2_00354 [Caminibacter mediatlanticus TB-2]
Length = 83
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 53/82 (64%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
PKLY+V+L+ND+YT +FVI +L+ F K E A + LKV +G G+Y YEIA MK
Sbjct: 2 PKLYKVILLNDDYTTFDFVIEILKTVFGKSEEDAINLTLKVDREGSAVVGLYPYEIALMK 61
Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
V++V +R YPL+ +E+
Sbjct: 62 VDKVHQLARSAGYPLRARIEED 83
>gi|260462566|ref|ZP_05810773.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
opportunistum WSM2075]
gi|259031762|gb|EEW33031.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
opportunistum WSM2075]
Length = 101
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+ + + PKLY+V+L+ND++TP EFV+ VL+ F + A IM+ H
Sbjct: 2 PEITTKPRTKVKPQTERPKLYKVILINDDFTPREFVVTVLKGEFKLSEDQAHRIMITAHQ 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G+ V+ ++AE K + + + YPL E +
Sbjct: 62 RGVCVVAVFTRDVAETKATRATDAGKAKGYPLLFTTEPE 100
>gi|205355853|ref|ZP_03222622.1| hypothetical protein Cj8421_1136 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346287|gb|EDZ32921.1| hypothetical protein Cj8421_1136 [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 96
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 62/94 (65%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
++ +K+ PK+Y+V+L+ND+ T M+FVI +L N F+++ E A ML++HH G G
Sbjct: 3 KTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGI 62
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA K +V++ ++ +PLQ +E++
Sbjct: 63 CGIYTQEIALSKQKKVIDSAKLANFPLQAKVEEE 96
>gi|239998603|ref|ZP_04718527.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae 35/02]
gi|240013726|ref|ZP_04720639.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae DGI18]
gi|240016164|ref|ZP_04722704.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae FA6140]
gi|240080308|ref|ZP_04724851.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae FA19]
gi|240112519|ref|ZP_04727009.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae MS11]
gi|240115259|ref|ZP_04729321.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae PID18]
gi|240117546|ref|ZP_04731608.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae PID1]
gi|240120796|ref|ZP_04733758.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae PID24-1]
gi|240123101|ref|ZP_04736057.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae PID332]
gi|240125352|ref|ZP_04738238.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae SK-92-679]
gi|240127805|ref|ZP_04740466.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae SK-93-1035]
gi|254493323|ref|ZP_05106494.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae 1291]
gi|260440923|ref|ZP_05794739.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
gonorrhoeae DGI2]
gi|268594461|ref|ZP_06128628.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae 35/02]
gi|268596457|ref|ZP_06130624.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae FA19]
gi|268598589|ref|ZP_06132756.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae MS11]
gi|268600942|ref|ZP_06135109.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae PID18]
gi|268603249|ref|ZP_06137416.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268681729|ref|ZP_06148591.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae PID332]
gi|268683956|ref|ZP_06150818.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae SK-92-679]
gi|268686201|ref|ZP_06153063.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae SK-93-1035]
gi|226512363|gb|EEH61708.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae 1291]
gi|268547850|gb|EEZ43268.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae 35/02]
gi|268550245|gb|EEZ45264.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae FA19]
gi|268582720|gb|EEZ47396.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae MS11]
gi|268585073|gb|EEZ49749.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae PID18]
gi|268587380|gb|EEZ52056.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622013|gb|EEZ54413.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae PID332]
gi|268624240|gb|EEZ56640.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae SK-92-679]
gi|268626485|gb|EEZ58885.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
gonorrhoeae SK-93-1035]
Length = 112
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +IA+
Sbjct: 30 PPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLSVHHEGKGLCGTYTRDIAQT 89
Query: 116 KVNQVMNYSRQHQYPLQCIMEQ 137
K QVM ++ +PLQCI+E+
Sbjct: 90 KQQQVMQRAKAEGHPLQCIVEE 111
>gi|218767947|ref|YP_002342459.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis Z2491]
gi|12230806|sp|Q9JV14|CLPS_NEIMA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|121051955|emb|CAM08263.1| hypothetical protein NMA1046 [Neisseria meningitidis Z2491]
Length = 103
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
D+ D+ + + PK Y V L+ND+YT MEFV+ +L F E A +ML
Sbjct: 2 NHPNTDHQSDTLL-SDINTQPPKRYGVFLLNDDYTTMEFVVEILTEVFMLAQEQAVAVML 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VHH+G G CG Y +IA+ K +QVM ++ +PL+CI+E+
Sbjct: 61 LVHHEGKGLCGTYTRDIAQTKQHQVMERAKTEGHPLKCIVEE 102
>gi|297180171|gb|ADI16393.1| uncharacterized conserved protein [uncultured bacterium
HF130_12L15]
Length = 101
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 53/98 (54%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D S + K+ P+L++V+L ND++TP EFV+ VL+ F + + A+ +M+ H +
Sbjct: 3 DVDTKSRTKVKPKIERPRLHKVILFNDDFTPREFVVMVLKAEFGMNADQAQQVMITAHRR 62
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G V+ ++AE K + + R+ +PL E +
Sbjct: 63 GACVVAVFTKDVAETKATRATDAGRKMGFPLLFGTEPE 100
>gi|15676733|ref|NP_273878.1| hypothetical protein NMB0837 [Neisseria meningitidis MC58]
gi|121634615|ref|YP_974860.1| hypothetical protein NMC0775 [Neisseria meningitidis FAM18]
gi|12230808|sp|Q9JZZ5|CLPS_NEIMB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|7226071|gb|AAF41248.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|120866321|emb|CAM10062.1| putative ATP-dependent Clp protease adaptor protein clpS [Neisseria
meningitidis FAM18]
gi|254670466|emb|CBA06136.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|254672383|emb|CBA05650.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
gi|261392811|emb|CAX50392.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis 8013]
gi|319410196|emb|CBY90534.1| ATP-dependent Clp protease adapter protein clpS [Neisseria
meningitidis WUE 2594]
gi|325132022|gb|EGC54720.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis M6190]
gi|325134027|gb|EGC56682.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis M13399]
gi|325135948|gb|EGC58558.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis M0579]
gi|325137776|gb|EGC60351.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis ES14902]
gi|325140015|gb|EGC62544.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis CU385]
gi|325144133|gb|EGC66440.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis M01-240013]
gi|325198040|gb|ADY93496.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis G2136]
gi|325200483|gb|ADY95938.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis H44/76]
gi|325202375|gb|ADY97829.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis M01-240149]
gi|325203908|gb|ADY99361.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis M01-240355]
gi|325206329|gb|ADZ01782.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis M04-240196]
gi|325207873|gb|ADZ03325.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria
meningitidis NZ-05/33]
Length = 100
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
PK Y V L+ND+YT MEFV+ +L F E A +ML VHH+G G CG Y +IA+
Sbjct: 18 PPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQT 77
Query: 116 KVNQVMNYSRQHQYPLQCIMEQ 137
K QVM ++ +PLQCI+E+
Sbjct: 78 KQQQVMQRAKAEGHPLQCIVEE 99
>gi|110634479|ref|YP_674687.1| ATP-dependent Clp protease adaptor [Mesorhizobium sp. BNC1]
gi|110285463|gb|ABG63522.1| ATP-dependent Clp protease adaptor protein ClpS [Chelativorans sp.
BNC1]
Length = 101
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D L + KV PKL++V+LVND++TP EFV+ VL+ F + + A +M+ H
Sbjct: 2 SDIVLKPRTKTKPKVDKPKLHKVILVNDDFTPREFVVRVLKAEFRLNQDQAYRVMITAHR 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G V+ +IAE K + + R+ YPL E +
Sbjct: 62 RGTCVVAVFPKDIAETKATRATDAGRKAGYPLLFTTEPE 100
>gi|283954672|ref|ZP_06372190.1| hypothetical protein C414_000240081 [Campylobacter jejuni subsp.
jejuni 414]
gi|283793864|gb|EFC32615.1| hypothetical protein C414_000240081 [Campylobacter jejuni subsp.
jejuni 414]
Length = 96
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 60/94 (63%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+ K+ PK+Y+V+L+ND+ T M+FVI +L N F+++ E A ML++HH G G
Sbjct: 3 KIQTLEQIKLSEPKMYKVILLNDDVTTMDFVIEILINIFHQNLEKANQTMLEIHHNGSGI 62
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA K +V++ ++ +PLQ +E++
Sbjct: 63 CGIYTQEIALSKQKKVIDAAKLANFPLQVKVEEE 96
>gi|51244739|ref|YP_064623.1| hypothetical protein DP0887 [Desulfotalea psychrophila LSv54]
gi|67460264|sp|Q6APV7|CLPS_DESPS RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|50875776|emb|CAG35616.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 102
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 60/102 (58%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ E DS + R P +YRVL+ ND+YT M+FV+ +L F K A+ IML
Sbjct: 1 MTEDKQQSDSATIDDIETREPPMYRVLIHNDDYTSMDFVVAILMQIFSKTEAVAEEIMLT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH +G G+Y +EIAE KV V + Q+++PL+C +E++
Sbjct: 61 VHSSEVGVAGLYTHEIAETKVAIVHQLAEQNEFPLRCSLEKE 102
>gi|218891218|ref|YP_002440084.1| hypothetical protein PLES_24841 [Pseudomonas aeruginosa LESB58]
gi|254235607|ref|ZP_04928930.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254241054|ref|ZP_04934376.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|308154504|ref|NP_251311.3| hypothetical protein PA2621 [Pseudomonas aeruginosa PAO1]
gi|313107658|ref|ZP_07793841.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
aeruginosa 39016]
gi|9948687|gb|AAG06009.1|AE004690_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|126167538|gb|EAZ53049.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126194432|gb|EAZ58495.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218771443|emb|CAW27210.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
gi|310880343|gb|EFQ38937.1| ATP-dependent Clp protease adaptor protein clpS [Pseudomonas
aeruginosa 39016]
Length = 78
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 63 LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+L ND+YTPM+FV+ VL+ FF D E A IML VH QG CG++ ++AE K QV
Sbjct: 2 VLFNDDYTPMDFVVEVLEVFFNMDREKATKIMLTVHTQGKAVCGLFTRDVAETKAMQVNQ 61
Query: 123 YSRQHQYPLQCIMEQK 138
Y+R+ Q+PL C +E+
Sbjct: 62 YARESQHPLLCEIEKD 77
>gi|315638592|ref|ZP_07893766.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
upsaliensis JV21]
gi|315481216|gb|EFU71846.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
upsaliensis JV21]
Length = 96
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 59/94 (62%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
E ++ PK+Y+V+L+ND+ T M+FVI VL F+ E A IMLK+H +G G
Sbjct: 3 KLESLQKEHLQEPKMYKVVLLNDDVTTMDFVIEVLMYVFFHSFEKANEIMLKIHCEGSGV 62
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA K +V N +++ Q+PLQ +E++
Sbjct: 63 CGIYTQEIALSKQKKVQNMAKEAQFPLQSRVEEE 96
>gi|218193695|gb|EEC76122.1| hypothetical protein OsI_13390 [Oryza sativa Indica Group]
Length = 3986
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 36 GIAEFDNCLDSEVRFSS-KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
G+ D+ + + + + P++Y+V+++ND+YTPMEFVI VLQ FF KD E A IM
Sbjct: 3583 GVPSRDDGGSVVLERRTQRTQPPQMYQVVMLNDDYTPMEFVIVVLQEFFGKDREAATQIM 3642
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQY 129
LK+H G G CGVY+ ++A KV Q + S +
Sbjct: 3643 LKIHLDGKGVCGVYSRDVAATKVEQELEVSLHMAF 3677
>gi|294668967|ref|ZP_06734054.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria elongata
subsp. glycolytica ATCC 29315]
gi|291309140|gb|EFE50383.1| ATP-dependent Clp protease adaptor protein ClpS [Neisseria elongata
subsp. glycolytica ATCC 29315]
Length = 101
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 55/85 (64%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
++R P+ Y V L+ND+YT M+FV+ VL F + A +ML VHH+G G CGVY +I
Sbjct: 15 QLRPPRKYGVFLLNDDYTTMDFVVEVLTEVFRLPEDRAVAVMLLVHHEGKGLCGVYTRDI 74
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A+ K QV + + +PL+CI+E+
Sbjct: 75 AQTKQMQVHHRAEDAGFPLKCILEE 99
>gi|254491965|ref|ZP_05105143.1| ATP-dependent Clp protease adaptor protein ClpS [Methylophaga
thiooxidans DMS010]
gi|224462780|gb|EEF79051.1| ATP-dependent Clp protease adaptor protein ClpS [Methylophaga
thiooxydans DMS010]
Length = 75
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 55/75 (73%)
Query: 64 LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
++ND+YTPM+FV+ VL+N F E A ML+VH +G CG++ YEIAE KV QV +Y
Sbjct: 1 MLNDDYTPMDFVVEVLENLFGMGREKATQTMLQVHTEGSALCGIFTYEIAEAKVEQVNSY 60
Query: 124 SRQHQYPLQCIMEQK 138
S++H +PLQC ME++
Sbjct: 61 SQRHGHPLQCTMEEE 75
>gi|75674828|ref|YP_317249.1| ATP-dependent Clp protease adaptor [Nitrobacter winogradskyi
Nb-255]
gi|74419698|gb|ABA03897.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
winogradskyi Nb-255]
Length = 101
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D + ++ +K+ P+LY+V+L ND++TP EFV+ VL F A +M+
Sbjct: 2 SDIAIKPRIKAETKIERPRLYKVILHNDDFTPREFVVAVLMAEFNMTDGQAHKVMITADR 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G GV+A +IAE K + + R +PL E +
Sbjct: 62 LGSCVVGVFARDIAETKATRATDAGRSMGFPLLFTTEPE 100
>gi|92116383|ref|YP_576112.1| ATP-dependent Clp protease adaptor [Nitrobacter hamburgensis X14]
gi|91799277|gb|ABE61652.1| ATP-dependent Clp protease adaptor protein ClpS [Nitrobacter
hamburgensis X14]
Length = 101
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D + + P+L++V+L ND+YTP EFV+ VL F + A +M+ H
Sbjct: 2 SDTAIKPRTNVEPRTERPRLHKVILHNDDYTPREFVVTVLMAEFGLTEDQAHKVMITAHR 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G V+ ++AE K + + R +PL E +
Sbjct: 62 LGCCVVAVFTRDVAETKATRATDAGRAMGFPLLFTTEPE 100
>gi|13472441|ref|NP_104008.1| ATP-dependent Clp protease adaptor [Mesorhizobium loti MAFF303099]
gi|21542322|sp|Q98HS2|CLPS2_RHILO RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
gi|14023187|dbj|BAB49794.1| mll2736 [Mesorhizobium loti MAFF303099]
Length = 101
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+ + + PKLY+V+L+ND++TP EFV+ VL+ F + A IM+ H
Sbjct: 2 PEITTKPRTKVKPQTERPKLYKVILINDDFTPREFVVTVLKGEFKLSEDQAHRIMITAHR 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G+ V+ ++AE K + + + YPL E +
Sbjct: 62 RGVCVVAVFTKDVAETKATRATDAGKAKGYPLLFTTEPE 100
>gi|57242270|ref|ZP_00370209.1| Uncharacterized ACR, COG2127 [Campylobacter upsaliensis RM3195]
gi|57016950|gb|EAL53732.1| Uncharacterized ACR, COG2127 [Campylobacter upsaliensis RM3195]
Length = 96
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 60/94 (63%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
E ++ PK+Y+V+L+ND+ T M+FVI VL + F+ E A IMLK+H +G G
Sbjct: 3 KLESLQKEHLQEPKMYKVVLLNDDVTTMDFVIEVLMHVFFHSFEKANEIMLKIHCEGSGV 62
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
CG+Y EIA K +V N +++ Q+PLQ +E++
Sbjct: 63 CGIYTQEIALSKQKKVQNMAKEAQFPLQSRVEEE 96
>gi|264678276|ref|YP_003278183.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
testosteroni CNB-2]
gi|299533529|ref|ZP_07046906.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
testosteroni S44]
gi|262208789|gb|ACY32887.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
testosteroni CNB-2]
gi|298718487|gb|EFI59467.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
testosteroni S44]
Length = 95
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 56/79 (70%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+Y+V+++ND++TPMEFVI VLQ F KD E+A IMLK+H G G CGVY+ ++A KV
Sbjct: 15 MYQVVMLNDDFTPMEFVIAVLQELFGKDRESATQIMLKIHLDGRGVCGVYSQDVAATKVE 74
Query: 119 QVMNYSRQHQYPLQCIMEQ 137
QV+ +++ +PLQ E
Sbjct: 75 QVLQAAQKAGHPLQATFEP 93
>gi|125973731|ref|YP_001037641.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
thermocellum ATCC 27405]
gi|256005533|ref|ZP_05430494.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
thermocellum DSM 2360]
gi|281417888|ref|ZP_06248908.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
thermocellum JW20]
gi|229889819|sp|A3DER9|CLPS_CLOTH RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|125713956|gb|ABN52448.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
thermocellum ATCC 27405]
gi|255990513|gb|EEU00634.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
thermocellum DSM 2360]
gi|281409290|gb|EFB39548.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
thermocellum JW20]
gi|316940075|gb|ADU74109.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
thermocellum DSM 1313]
Length = 99
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
+ + + PK+Y+V+L+ND+YT M+FV+ +L F+K A IML VH +G G
Sbjct: 7 VKKETNVDFKKPKMYKVILLNDDYTTMDFVVEILITVFHKTAADATRIMLDVHRKGKGVV 66
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GVY Y+IA K+ V + + ++PL +ME +
Sbjct: 67 GVYTYDIARSKIALVEKMAAEREFPLAAVMEPE 99
>gi|315186429|gb|EFU20189.1| ATP-dependent Clp protease adaptor protein ClpS [Spirochaeta
thermophila DSM 6578]
Length = 115
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+Y V+L+ND++TPMEFV+ +L + F+KD A IML VH G G+ Y Y+IA KV
Sbjct: 36 MYWVVLLNDDFTPMEFVVDILVDIFHKDRVEATKIMLTVHRTGKGKVATYPYDIAVTKVA 95
Query: 119 QVMNYSRQHQYPLQCIMEQ 137
QV +R+ +PL+C +E+
Sbjct: 96 QVHRRAREAGHPLRCTVEK 114
>gi|148253958|ref|YP_001238543.1| ATP-dependent Clp protease adaptor [Bradyrhizobium sp. BTAi1]
gi|146406131|gb|ABQ34637.1| ATP-dependent Clp protease adaptor protein clpS 2 [Bradyrhizobium
sp. BTAi1]
Length = 115
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 53/98 (54%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + + +KV P+LY+V+LVND++TP +FV+ +L++ F + A +M+ H
Sbjct: 17 DAVTKPKTKVRTKVERPRLYKVILVNDDFTPRDFVVMILKSEFRMTEDQAYKVMITAHKL 76
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+ V+ ++AE K + + R YPL E +
Sbjct: 77 GVCVVAVFTKDVAETKATRATDAGRAKGYPLLFTTEPE 114
>gi|303242598|ref|ZP_07329074.1| ATP-dependent Clp protease adaptor protein ClpS [Acetivibrio
cellulolyticus CD2]
gi|302589855|gb|EFL59627.1| ATP-dependent Clp protease adaptor protein ClpS [Acetivibrio
cellulolyticus CD2]
Length = 99
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 54/86 (62%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ + PK+Y+V+L+ND+YT MEFVI VL F+K+ A IML VH +G G G Y Y+I
Sbjct: 14 EFKKPKMYKVILLNDDYTTMEFVIEVLIAVFHKNPTDATQIMLDVHEKGKGIVGAYTYDI 73
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQK 138
A K+ QV + + +PL +ME
Sbjct: 74 ACTKIAQVEEMAIKRDFPLVTVMEPD 99
>gi|90422655|ref|YP_531025.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
BisB18]
gi|90104669|gb|ABD86706.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris BisB18]
Length = 105
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + K PKL++V+LVND+YTP EFV+ VLQ F + A +M+ H +G+
Sbjct: 9 DVAPRTKVKPKTERPKLHKVILVNDDYTPREFVVRVLQAEFRMTEDQAHKVMITAHQRGV 68
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
V+ ++AE K + + R YPL E +
Sbjct: 69 CVVAVFTKDVAETKATRATDAGRAKGYPLLFTTEPE 104
>gi|313143016|ref|ZP_07805209.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
cinaedi CCUG 18818]
gi|313128047|gb|EFR45664.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
cinaedi CCUG 18818]
Length = 87
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 57/84 (67%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ PKLYRVLL+ND++T M FV H+L F K + A+ I LKVH++G G CG+Y Y+IA
Sbjct: 2 LEEPKLYRVLLLNDDWTAMNFVTHILMEVFDKTSQEARAITLKVHNEGKGVCGIYPYDIA 61
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
E+K V +++ YPL+ I E+
Sbjct: 62 ELKTQLVSQKAKEQGYPLRVITEE 85
>gi|84501067|ref|ZP_00999302.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanicola
batsensis HTCC2597]
gi|84391134|gb|EAQ03552.1| ATP-dependent Clp protease adaptor protein ClpS [Oceanicola
batsensis HTCC2597]
Length = 101
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 51/98 (52%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + V +++ PKLY+V+L+ND++TP FV+ VLQ F A+ +M+ H +
Sbjct: 3 DRAPEGTVETATRSERPKLYKVILLNDDFTPRRFVVKVLQGVFRMTEGEAEAVMMTAHRR 62
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G V+ EIAE K + R +PL E++
Sbjct: 63 GACVVAVFTREIAEQKAREATELGRHAGFPLTFTTERE 100
>gi|300726156|ref|ZP_07059613.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella
bryantii B14]
gi|299776626|gb|EFI73179.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella
bryantii B14]
Length = 98
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 56/96 (58%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+S ++ K++ P+ Y+V+ ND+ T M+FVI VL F+K ++ A+ +M+KVH G
Sbjct: 3 QTNSNIKERIKLKEPRRYQVIFFNDDVTTMDFVIEVLTTVFHKAYQEAEELMMKVHLNGS 62
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GVY+Y+IA K + + +PL+ M+ +
Sbjct: 63 AVVGVYSYDIALTKTTNASEMAHKAGFPLRIEMQAE 98
>gi|311694972|gb|ADP97845.1| ATP-dependent Clp protease adaptor protein ClpS [marine bacterium
HP15]
Length = 78
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 50/75 (66%)
Query: 63 LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+L+ND+YTPM+FV+ VL FF + E A +ML VH QG CGVY +IAE K QV
Sbjct: 2 VLLNDDYTPMDFVVDVLMKFFGMNEEKATQVMLLVHTQGKAVCGVYTRDIAETKAAQVNQ 61
Query: 123 YSRQHQYPLQCIMEQ 137
YS + ++PL C +E+
Sbjct: 62 YSSECEHPLLCEIER 76
>gi|222824061|ref|YP_002575635.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter lari
RM2100]
gi|222539283|gb|ACM64384.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter lari
RM2100]
Length = 97
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 61/92 (66%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E+ K+ PK+++VLL+ND+ T MEFVI VL N F+ D E A IML++H+QG G CG
Sbjct: 6 EILEQQKLTEPKMFKVLLLNDDITTMEFVIEVLMNIFHHDFEKASAIMLEIHNQGSGICG 65
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+Y EIA K QV ++ + +PLQ +E++
Sbjct: 66 IYTEEIALSKKQQVDLAAKSNNFPLQTRIEEQ 97
>gi|288929195|ref|ZP_06423040.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
oral taxon 317 str. F0108]
gi|288329297|gb|EFC67883.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
oral taxon 317 str. F0108]
Length = 109
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 54/95 (56%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R + +R P+ Y+VL+ ND++T M+FV+ +L+ F+K A+ +ML VH
Sbjct: 14 QEAIRERIRTNLREPRKYKVLIHNDDFTTMDFVVMILKVVFFKSETEAEALMLAVHRSDK 73
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GVY+Y++A KV++ + +R YPL+ +
Sbjct: 74 AVVGVYSYDVAMSKVSKATDMARHAGYPLRLTCQP 108
>gi|316932749|ref|YP_004107731.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris DX-1]
gi|315600463|gb|ADU42998.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris DX-1]
Length = 101
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+ L + + KV PKL++V+LVND+YTP EFV+ VL+ + A +ML H
Sbjct: 2 SNIDLKPKTKAKIKVERPKLHKVILVNDDYTPREFVVSVLKAELRMTEDQAYKVMLTAHQ 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G+ GV+ ++AE K + + R YPL E +
Sbjct: 62 RGVCVVGVFTKDVAETKATRATDAGRAKGYPLLFTTEPE 100
>gi|49082482|gb|AAT50641.1| PA2621 [synthetic construct]
Length = 79
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 63 LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+L ND+YTPM+FV+ VL+ FF D E A ML VH QG CG++ ++AE K QV
Sbjct: 2 VLFNDDYTPMDFVVEVLEVFFNMDREKATKTMLTVHTQGKAVCGLFTRDVAETKAMQVNQ 61
Query: 123 YSRQHQYPLQCIMEQK 138
Y+R+ Q+PL C +E+
Sbjct: 62 YARESQHPLLCEIEKD 77
>gi|115523083|ref|YP_779994.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
BisA53]
gi|115517030|gb|ABJ05014.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris BisA53]
Length = 101
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+ +KV PKL++V+LVND+YTP EFV+ VL+ F + A +M+ H +G+ V
Sbjct: 10 TKTRTKVERPKLHKVILVNDDYTPREFVVRVLKAEFRMTEDQAHKVMITAHQRGVCVVAV 69
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ +IAE K + + R YPL E +
Sbjct: 70 FTRDIAETKATRATDAGRAKGYPLLFTTEPE 100
>gi|326793263|ref|YP_004311084.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
lentocellum DSM 5427]
gi|326544027|gb|ADZ85886.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
lentocellum DSM 5427]
Length = 99
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 58/96 (60%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D + +KV++PK Y+V++ ND+YT MEFV+ VL F K A+ IM+ VH G
Sbjct: 3 PNHDLNQKIKAKVKLPKQYQVIMFNDDYTTMEFVVEVLTQIFNKSAAEAEKIMMDVHKAG 62
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G G+Y+Y+IA K M+++++ +P + +E+
Sbjct: 63 HGVAGIYSYDIAMTKAGTAMSWAKEEGFPFKLSVEE 98
>gi|239907009|ref|YP_002953750.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
magneticus RS-1]
gi|239796875|dbj|BAH75864.1| ATP-dependent Clp protease adaptor protein ClpS [Desulfovibrio
magneticus RS-1]
Length = 119
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 63/100 (63%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
D + +VR P+ ++V+L ND+YT MEFV+ VL + F K+ A IML V
Sbjct: 19 PMEDEQSGVGLSVEDEVREPRQFKVMLHNDDYTTMEFVVLVLVSVFRKNENEATQIMLNV 78
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H+ G+G CG+Y E+AE+KV+ V ++++ YPL+C ME+
Sbjct: 79 HNTGVGVCGIYTAEVAELKVSLVHRLAKENGYPLRCSMEE 118
>gi|209550349|ref|YP_002282266.1| ATP-dependent Clp protease adaptor [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209536105|gb|ACI56040.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 103
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ D L + + K+ PKLY+V+LVND+YTP EFVI +L+ F ET +M+
Sbjct: 1 MSDNDVALKPKTKVKPKLDKPKLYKVILVNDDYTPREFVIVILKAVFRMSEETGYRVMMT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G V A +IAE K + ++ +++ +PL E +
Sbjct: 61 AHKLGSCVVVVCARDIAETKAKEGIDLAKEMGFPLMFTTEPE 102
>gi|218681500|ref|ZP_03529387.1| ATP-dependent Clp protease adaptor [Rhizobium etli CIAT 894]
Length = 112
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 58/101 (57%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ D L +++ K+ PKLY+V+LVND+YTP EFVI +L++ F ET +M+
Sbjct: 1 MSDNDVALKPKIKVKPKLDKPKLYKVILVNDDYTPREFVIVILKSVFRMSEETGYKVMMT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H G V A +IAE K + ++ +++ +PL E
Sbjct: 61 AHKLGSCVVVVCARDIAETKAKEGIDLAKEMGFPLMFTTEP 101
>gi|91975795|ref|YP_568454.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
BisB5]
gi|91682251|gb|ABE38553.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
palustris BisB5]
Length = 101
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ K+ PKL++V+LVND++TP EFV+ +L+ F E A +ML H +G+
Sbjct: 5 VTKPSTKAKPKLERPKLHKVILVNDDFTPREFVVMILKAEFRMTEEQAYKVMLTAHQRGV 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
V+ ++AE K + + R YPL E +
Sbjct: 65 CVVAVFTKDVAETKATRATDAGRVKGYPLLFTTEPE 100
>gi|118591833|ref|ZP_01549228.1| ATP-dependent Clp protease adaptor protein ClpS [Stappia aggregata
IAM 12614]
gi|118435476|gb|EAV42122.1| ATP-dependent Clp protease adaptor protein ClpS [Stappia aggregata
IAM 12614]
Length = 100
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 59/96 (61%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+++ +KV+ PKLY+V+L+ND+YTP EFV+ +L+ F D A+ +M+ H +G+
Sbjct: 5 DFKPKLKQKTKVQRPKLYKVMLLNDDYTPREFVVLILKAEFRLDESQAEVVMMTAHQKGV 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VY ++AE K + ++ + + YPLQ +E +
Sbjct: 65 CVVSVYPRDVAETKATRAIDAAVRLGYPLQFTVEPE 100
>gi|319781851|ref|YP_004141327.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317167739|gb|ADV11277.1| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 101
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 51/99 (51%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+ + +V PKLY+V+L+ND++TP EFV+ VL+ F + A +M+ H
Sbjct: 2 PEITTKPRTQIKPQVERPKLYKVILINDDFTPREFVVTVLKGEFKLSEDQAHRVMITAHR 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G+ V+ ++AE K + + + YPL E +
Sbjct: 62 RGVCVVAVFTKDVAETKATRATDAGKAKGYPLMFTTEPE 100
>gi|190892773|ref|YP_001979315.1| putative ATP-dependent Clp protease adaptor protein [Rhizobium etli
CIAT 652]
gi|190698052|gb|ACE92137.1| putative ATP-dependent Clp protease adaptor protein [Rhizobium etli
CIAT 652]
Length = 103
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ D L + + K+ PKLY+V+LVND+YTP EFVI +L+ F ET +M+
Sbjct: 1 MSDNDVALKPKTKVEPKLDKPKLYKVILVNDDYTPREFVIAILKIVFRMSEETGYRVMMT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G V A +IAE K + ++ +++ +PL E +
Sbjct: 61 AHKLGSCVVVVCAKDIAETKAKEGIDLAKEMGFPLMFTTEPE 102
>gi|326562900|gb|EGE13187.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis 46P47B1]
gi|326565261|gb|EGE15446.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis 12P80B1]
gi|326570971|gb|EGE20995.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis BC7]
gi|326575834|gb|EGE25757.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis CO72]
gi|326576916|gb|EGE26822.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis O35E]
Length = 121
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
D +V+ PKLY V++ NDNYT M+FV++VL F + + A +M+++H G
Sbjct: 26 DTDVITETKIQVKQPKLYTVIMYNDNYTTMDFVVYVLVEIFQHNIDKAYQLMMQIHELGQ 85
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ Y++AEMKV++V + Q YPL +E
Sbjct: 86 AAVALLPYDLAEMKVDEVTALAEQESYPLLTTIEP 120
>gi|218674100|ref|ZP_03523769.1| ATP-dependent Clp protease adaptor [Rhizobium etli GR56]
gi|327188355|gb|EGE55572.1| ATP-dependent Clp protease adaptor [Rhizobium etli CNPAF512]
Length = 103
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ D L + + K+ PKLY+V+LVND+YTP EFVI +L+ F ET +M+
Sbjct: 1 MSDNDVALKPKTKVKPKLDKPKLYKVILVNDDYTPREFVIVILKVVFRMSEETGYRVMMT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G V A +IAE K + ++ +++ +PL E +
Sbjct: 61 AHKLGSCVVVVCAKDIAETKAKEGIDLAKEMGFPLMFTTEPE 102
>gi|242309928|ref|ZP_04809083.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pullorum MIT 98-5489]
gi|239523225|gb|EEQ63091.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pullorum MIT 98-5489]
Length = 101
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
P Y+V+L+ND+YT +FVI VLQ F+KD E + +ML++HH G G CG+Y Y+IAE K
Sbjct: 20 PIRYKVILLNDDYTTQDFVIEVLQKVFHKDFEASLNLMLQIHHNGRGMCGIYPYDIAETK 79
Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
+V ++ Q+PL+ I+E+
Sbjct: 80 ALEVRKMAKAKQFPLRAILEK 100
>gi|254519310|ref|ZP_05131366.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium sp.
7_2_43FAA]
gi|226913059|gb|EEH98260.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium sp.
7_2_43FAA]
Length = 99
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ + + K++ PK + V++ ND++T MEFV+ +L + F + E A IM++VH
Sbjct: 2 ETNANILEKIDLKIKKPKKFIVIMHNDDFTTMEFVVAILSDIFNRSIEEANKIMMEVHKN 61
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G G G+Y Y+IA K + M +++ +P + +E++
Sbjct: 62 GKGVAGIYPYDIAISKATKAMTLAKEEGFPFKLTVEEE 99
>gi|218460642|ref|ZP_03500733.1| ATP-dependent Clp protease adaptor [Rhizobium etli Kim 5]
gi|218506911|ref|ZP_03504789.1| ATP-dependent Clp protease adaptor [Rhizobium etli Brasil 5]
Length = 107
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ D L + + K+ PKLY+V+LVND+YTP EFVI +L+ F ET +M+
Sbjct: 5 MSDNDVALKPKTKVKPKLDKPKLYKVILVNDDYTPREFVIVILKVVFRMSEETGYRVMMT 64
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G V A +IAE K + ++ +++ +PL E +
Sbjct: 65 AHKLGSCVVVVCAKDIAETKAKEGIDLAKEMGFPLMFTTEPE 106
>gi|183221238|ref|YP_001839234.1| ATP-dependent Clp protease adaptor protein Clp [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189911329|ref|YP_001962884.1| hypothetical protein LBF_1799 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|238687770|sp|B0S9H9|CLPS_LEPBA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|238687849|sp|B0SS68|CLPS_LEPBP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|167776005|gb|ABZ94306.1| conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167779660|gb|ABZ97958.1| ATP-dependent Clp protease adaptor protein clp [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 113
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 65/110 (59%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
S N+K +F+ L + + K++ P Y+V+L+ND+YTP EFV++VL F K +
Sbjct: 1 MSESNRKSYTDFNVELLEKEKQKKKLKKPDRYKVILINDDYTPQEFVVYVLAVVFRKSMD 60
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
++ IM + H +G CGVY+ +IA KV +V + +PLQC + ++
Sbjct: 61 ESRQIMWRAHTEGSAVCGVYSLDIARTKVAEVHKLADDAGHPLQCQLAKE 110
>gi|255321468|ref|ZP_05362626.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
showae RM3277]
gi|255301324|gb|EET80583.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
showae RM3277]
Length = 103
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 61/102 (59%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
A+ + +V K P+ ++V+L+ND+ T M+FV+ VL F+ ++A +MLK
Sbjct: 2 PAKTATERERDVAIKEKPEFPRKFKVILLNDDVTSMDFVVGVLVEIFHHTAQSAVAVMLK 61
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+H++G G G+Y EIA+ K NQ + + YPL+ ++E++
Sbjct: 62 IHNEGSGVAGIYNKEIAQTKQNQTLKAAAAAGYPLKAVVEEE 103
>gi|218661878|ref|ZP_03517808.1| ATP-dependent Clp protease adaptor [Rhizobium etli IE4771]
Length = 107
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 57/102 (55%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ D L + + K+ PKLY+V+LVND+YTP +FVI +L+ F ET +M+
Sbjct: 5 MSDNDVALKPKTKVKPKLDKPKLYKVILVNDDYTPRDFVIVILKVVFRMSEETGYRVMMT 64
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G V A +IAE K + ++ +++ +PL E +
Sbjct: 65 AHKLGSCVVVVCAKDIAETKAKEGIDLAKEMGFPLMFTTEPE 106
>gi|294672831|ref|YP_003573447.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella
ruminicola 23]
gi|294472147|gb|ADE81536.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella
ruminicola 23]
Length = 101
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 58/97 (59%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
++ R + +R P+ Y+V + ND++T MEFV+ +L F+K A+ +ML+VHH
Sbjct: 4 EQSATKERQHTNLREPRRYKVTIYNDDFTTMEFVVKILTQVFFKSETEAEALMLQVHHSD 63
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y+Y++A KV + N +R+ +PL+ +E +
Sbjct: 64 KAVVGIYSYDVATSKVRKATNMAREEGFPLRLTVEPE 100
>gi|86358632|ref|YP_470524.1| ATP-dependent Clp protease adaptor [Rhizobium etli CFN 42]
gi|86282734|gb|ABC91797.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 103
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ D L + + K+ PKLY+V+LVND+YTP EFVI +L+ F ET +M+
Sbjct: 1 MSDNDVALKPKTKVRPKLDKPKLYKVILVNDDYTPREFVIVILKVVFRMSEETGYRVMMT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G V A +IAE K + ++ +++ +PL E +
Sbjct: 61 AHKLGSCVVVVCAKDIAETKAKEGIDLAKEMGFPLMFTTEPE 102
>gi|326794631|ref|YP_004312451.1| ATP-dependent Clp protease adapter protein clpS [Marinomonas
mediterranea MMB-1]
gi|326545395|gb|ADZ90615.1| ATP-dependent Clp protease adapter protein clpS [Marinomonas
mediterranea MMB-1]
Length = 117
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
++ P +Y+V+L ND+YTPM+FV+ VLQ FF D E A+ +ML+VH +G G CGVY + I
Sbjct: 30 ELSPPSMYQVVLFNDDYTPMDFVVFVLQRFFNMDGEKAEQVMLEVHMKGKGVCGVYPFGI 89
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
AE KV QV + +Q+++PL C +++
Sbjct: 90 AETKVAQVQQFVQQNEHPLMCDLQK 114
>gi|294787951|ref|ZP_06753195.1| ATP-dependent Clp protease adaptor protein ClpS [Simonsiella
muelleri ATCC 29453]
gi|294484244|gb|EFG31927.1| ATP-dependent Clp protease adaptor protein ClpS [Simonsiella
muelleri ATCC 29453]
Length = 100
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 56/87 (64%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+++ PK Y V L+ND+YT MEFV+ +L + F + E A +ML++HH G G CGVY
Sbjct: 12 QNQIAPPKQYGVYLLNDDYTTMEFVVQILMDVFRQPEERAISVMLEIHHHGKGLCGVYTR 71
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
++A+ K +QVM + +PL C +E+
Sbjct: 72 DMAQTKQHQVMILAADAGFPLLCTVEE 98
>gi|296113266|ref|YP_003627204.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis RH4]
gi|295920961|gb|ADG61312.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis RH4]
gi|326570234|gb|EGE20279.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis BC8]
Length = 112
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
D +V+ PKLY V++ NDNYT M+FV++VL F + + A +M+++H G
Sbjct: 17 DTDVITETKIQVKQPKLYTVIMYNDNYTTMDFVVYVLVEIFQHNIDKAYQLMMQIHELGQ 76
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ Y++AEMKV++V + Q YPL +E
Sbjct: 77 AAVALLPYDLAEMKVDEVTALAEQESYPLLTTIEP 111
>gi|288870037|ref|ZP_06112699.2| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
hathewayi DSM 13479]
gi|288868668|gb|EFD00967.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
hathewayi DSM 13479]
Length = 111
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 60/110 (54%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M S +++G + +++ PK Y+V++ ND++TPM+ V+ +L + F K+
Sbjct: 1 MKFSDPDQEGRYSMPANTGLSEKTEIRLKQPKQYKVVMYNDDFTPMDVVVEILIDVFRKN 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
+E A IM+ VH GVY+Y+IA K + + +R+ YP + +E
Sbjct: 61 YEEAVAIMMTVHKGQRAVVGVYSYDIAMTKAARAVKIAREQGYPFRVEVE 110
>gi|225023808|ref|ZP_03713000.1| hypothetical protein EIKCOROL_00673 [Eikenella corrodens ATCC
23834]
gi|224943407|gb|EEG24616.1| hypothetical protein EIKCOROL_00673 [Eikenella corrodens ATCC
23834]
Length = 101
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 40 FDNCLDSEVRFSSKVRVPKL-YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
D + P Y V L+ND+YTPM+FV+ +L + F A+ +ML+VH
Sbjct: 2 SDTEQALRPEVVRENAPPPKRYGVFLLNDDYTPMDFVVGLLTDIFRLTENRAEAVMLQVH 61
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H+G G CG+Y +IA+ K QV N +RQ +PL ++E+
Sbjct: 62 HEGKGLCGIYQKDIADTKHQQVQNLARQAGHPLLSMVEE 100
>gi|150018965|ref|YP_001311219.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
beijerinckii NCIMB 8052]
gi|149905430|gb|ABR36263.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
beijerinckii NCIMB 8052]
Length = 99
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 61/97 (62%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ + ++ + V+ PK Y+V++ ND+YT MEFVI++L F K A+ IML VH +
Sbjct: 2 ETNIVTKPKNKVDVKKPKNYKVVMYNDDYTTMEFVINILVVVFNKKLIDAEKIMLDVHER 61
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G G G+Y+Y+IA KV+ M+ +++ +P + +E+
Sbjct: 62 GKGIAGIYSYDIAVTKVSTAMSMAKEKGFPFKLTVEE 98
>gi|326563659|gb|EGE13911.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis 103P14B1]
gi|326573267|gb|EGE23235.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis 101P30B1]
Length = 112
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
D+ +V+ PKLY V++ NDNYT M+FV++VL F + + A +M+++H G
Sbjct: 17 DTDAITETKIQVKQPKLYTVIMYNDNYTTMDFVVYVLVEIFQHNIDKAYQLMMQIHELGQ 76
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ Y++AEMKV++V + Q YPL +E
Sbjct: 77 AAVALLPYDLAEMKVDEVTALAEQESYPLLTTIEP 111
>gi|326560256|gb|EGE10644.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis 7169]
gi|326566426|gb|EGE16576.1| ATP-dependent Clp protease adaptor protein ClpS [Moraxella
catarrhalis BC1]
Length = 121
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
D +V+ PKLY V++ NDNYT M+FV++VL F + + A +M+++H G
Sbjct: 26 DTDVITETKIQVKQPKLYTVIMYNDNYTTMDFVVYVLVEIFQHNIDKAYQLMMQIHELGQ 85
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ Y++AEMKV++V + Q YPL ++E
Sbjct: 86 AAVALLPYDLAEMKVDEVTALAEQESYPLLTMIEP 120
>gi|291277520|ref|YP_003517292.1| putative ATP-dependent Clp protease adapter protein ClpS
[Helicobacter mustelae 12198]
gi|290964714|emb|CBG40569.1| putative ATP-dependent Clp protease adapter protein, ClpS
[Helicobacter mustelae 12198]
Length = 100
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 59/85 (69%)
Query: 52 SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+K+ P + V+++ND+YTPM+FVI++L + F K+ + A IML+VHH+G G CG+Y Y+
Sbjct: 14 TKISEPIMASVIILNDDYTPMDFVINILMSVFEKNQDQATQIMLEVHHKGSGVCGIYPYD 73
Query: 112 IAEMKVNQVMNYSRQHQYPLQCIME 136
IAE+K+ ++ Q PLQ ++
Sbjct: 74 IAELKLQIAREKTKTAQLPLQLELQ 98
>gi|329961966|ref|ZP_08299977.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides fluxus
YIT 12057]
gi|328530614|gb|EGF57472.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides fluxus
YIT 12057]
Length = 102
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 53/96 (55%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ R + +R P+ ++V + ND++T MEFV+ +L F+K A+ +M+KVH
Sbjct: 5 QSSYKERERTDLREPRRFKVTIYNDDFTTMEFVVKILTAVFFKSTAEAEALMMKVHESQS 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y Y+IA+ KV + +R +PL+ + +
Sbjct: 65 AVVGIYPYDIAQSKVQKATRMARNEGFPLRLTVTPE 100
>gi|227822866|ref|YP_002826838.1| ATP-dependent Clp protease adaptor [Sinorhizobium fredii NGR234]
gi|227341867|gb|ACP26085.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
fredii NGR234]
Length = 103
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ + + R K+ P+LY+V+LVND+YTP +FV+ VL+ F E +M+
Sbjct: 1 MSDNEVAPKRKTRVKPKLERPRLYKVILVNDDYTPRDFVVMVLKAIFRMSEEAGYRVMMT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G V A +IAE K + + ++ +PL E +
Sbjct: 61 AHKLGTSVVVVCARDIAETKAKEATDLGKEAGFPLMFTTEPE 102
>gi|198275274|ref|ZP_03207805.1| hypothetical protein BACPLE_01433 [Bacteroides plebeius DSM 17135]
gi|198271857|gb|EDY96127.1| hypothetical protein BACPLE_01433 [Bacteroides plebeius DSM 17135]
Length = 102
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 58/92 (63%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
+ + ++ PK Y+V+L ND++T M+FV+ VL+ F+K E A+ +MLKVH Q G
Sbjct: 9 KEKKRVELHEPKHYKVILHNDDFTTMDFVVKVLKIVFFKSQEEAEALMLKVHQQQSATAG 68
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VY+Y++A+ K + +R+ +PL+ +E +
Sbjct: 69 VYSYDVAQSKAQKATQMAREEGFPLRLTVEPE 100
>gi|83633194|gb|ABC29161.1| uncharacterized conserved protein [Hahella chejuensis KCTC 2396]
Length = 76
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 64 LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
++ND+YTPM+FV+ VL FF A +ML VH QG CGV+ +IAE K QV Y
Sbjct: 1 MLNDDYTPMDFVVEVLIRFFNMSEPKATQVMLAVHTQGRAVCGVFTRDIAESKAAQVNQY 60
Query: 124 SRQHQYPLQCIMEQ 137
S + ++PL C +E+
Sbjct: 61 SSECEHPLLCEIER 74
>gi|294084618|ref|YP_003551376.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292664191|gb|ADE39292.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 75
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 59/75 (78%)
Query: 64 LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
++ND+YTPMEFV+HVLQ+FF + + A IML VH +G+G CG+Y++EIAE K ++ M Y
Sbjct: 1 MMNDDYTPMEFVVHVLQHFFGRTADEATQIMLNVHQRGVGICGIYSFEIAETKASKTMEY 60
Query: 124 SRQHQYPLQCIMEQK 138
+RQ ++PLQ +E++
Sbjct: 61 ARQKEHPLQLQLEKE 75
>gi|302671436|ref|YP_003831396.1| ATP-dependent Clp protease adaptor protein ClpS [Butyrivibrio
proteoclasticus B316]
gi|302395909|gb|ADL34814.1| ATP-dependent Clp protease adaptor protein ClpS [Butyrivibrio
proteoclasticus B316]
Length = 99
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 59/96 (61%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
++ + S+++ P+ Y V+++ND++T M+FV+ +L + F+KD +A+ IML VH G
Sbjct: 3 TGSQTKEKTGSRIKEPRQYNVIMLNDDFTTMDFVVSILVDIFHKDPVSAEAIMLGVHKSG 62
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G Y Y+IA +VN + +++ +P + +E+
Sbjct: 63 QAVVGKYPYDIAVTRVNNALARAKKEGFPFRMTVEE 98
>gi|241205734|ref|YP_002976830.1| ATP-dependent Clp protease adaptor [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859624|gb|ACS57291.1| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 103
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 55/102 (53%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ D L + + K+ PKLY+V+LVND+YTP E VI +L+ F ET +M+
Sbjct: 1 MSDNDIALKPKTKVKPKLDKPKLYKVILVNDDYTPRELVIMILKAVFRMSEETGYRVMMT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G V A +IAE K + ++ ++ YPL E +
Sbjct: 61 AHKLGSCVVVVCAKDIAETKAKEGIDLAKGMGYPLMFTAEPE 102
>gi|224372651|ref|YP_002607023.1| ATP-dependent Clp protease adaptor protein ClpS [Nautilia
profundicola AmH]
gi|254763821|sp|B9L8R5|CLPS_NAUPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|223589176|gb|ACM92912.1| ATP-dependent Clp protease adaptor protein ClpS [Nautilia
profundicola AmH]
Length = 97
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 61/94 (64%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+ V ++ +PKLY+V+L+ND+YT +FVI +L+ F+K+ E A I LKV +G
Sbjct: 3 TKTVVENDVEIIMPKLYKVMLLNDDYTTFDFVIEILKTVFHKNEEEAINITLKVDREGSA 62
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GVY YEIA++K+ + +RQ YPL+ +ME+
Sbjct: 63 AVGVYPYEIAQVKIEKTHTLARQAGYPLRAVMEE 96
>gi|268607890|ref|ZP_06141621.1| ATP-dependent Clp protease adaptor protein ClpS [Ruminococcus
flavefaciens FD-1]
Length = 99
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 57/94 (60%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+ R S V+ P+LY V+++ND++T MEFV+ VL F+KD TA+ IM+ VH G
Sbjct: 5 GAVKERSDSMVKEPRLYSVIMINDDFTTMEFVVGVLVEIFHKDEITAQAIMMHVHKNGQA 64
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G Y Y+IA +V + + +++ +P + +E+
Sbjct: 65 VVGKYPYDIASTRVKKALERAKEEGFPFRMTIEE 98
>gi|221067305|ref|ZP_03543410.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
testosteroni KF-1]
gi|220712328|gb|EED67696.1| ATP-dependent Clp protease adaptor protein ClpS [Comamonas
testosteroni KF-1]
Length = 76
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 37/74 (50%), Positives = 51/74 (68%)
Query: 64 LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
++ND++TPMEFVI VLQ F KD E+A IMLK+H G G CGVY+ ++A KV QV+
Sbjct: 1 MLNDDFTPMEFVIAVLQELFGKDRESATQIMLKIHLDGRGVCGVYSQDVAATKVEQVLQA 60
Query: 124 SRQHQYPLQCIMEQ 137
+++ +PLQ E
Sbjct: 61 AQKAGHPLQATFEP 74
>gi|260909905|ref|ZP_05916593.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
oral taxon 472 str. F0295]
gi|260635950|gb|EEX53952.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
oral taxon 472 str. F0295]
Length = 100
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 53/95 (55%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
R + +R P+ Y+VL+ ND++T M+FV+ +L+ F+K A+ +ML VH
Sbjct: 5 QEAIRERVHTNIREPRKYKVLIHNDDFTTMDFVVMILKVVFFKTDTEAETLMLTVHRSSQ 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GVY+Y++A KV + + +R +PL+ +
Sbjct: 65 AVVGVYSYDVALSKVKKATDMARHAGFPLRLTCQP 99
>gi|307944237|ref|ZP_07659578.1| ATP-dependent Clp protease adaptor protein ClpS [Roseibium sp.
TrichSKD4]
gi|307772583|gb|EFO31803.1| ATP-dependent Clp protease adaptor protein ClpS [Roseibium sp.
TrichSKD4]
Length = 101
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 55/99 (55%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
D+ L + K+ PK Y+V+L+ND++TP EFV+ VL+ F D A+ +M H
Sbjct: 2 SDSDLKTRKSIRQKLERPKRYQVILLNDDFTPAEFVVFVLKGEFRLDVLQAEHVMETAHK 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G Y ++AE KV++ + + YPL+ I+E +
Sbjct: 62 KGANVVSTYPRDVAETKVSRATETAVRMGYPLKFIVEPE 100
>gi|224535859|ref|ZP_03676398.1| hypothetical protein BACCELL_00723 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522582|gb|EEF91687.1| hypothetical protein BACCELL_00723 [Bacteroides cellulosilyticus
DSM 14838]
Length = 102
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 55/96 (57%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + + +R P+ ++V++ ND++T MEFV+ +L F+K A+ +ML+VH
Sbjct: 5 QSSFKEKERTDLREPQHFKVIIYNDDFTTMEFVVKILTTIFFKSAAEAETLMLQVHKSQS 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y Y+IA+ KV + +R+ +PL+ + +
Sbjct: 65 AVVGIYTYDIAQSKVQKATRMAREENFPLRLTIAPE 100
>gi|15966109|ref|NP_386462.1| ATP-dependent Clp protease adaptor [Sinorhizobium meliloti 1021]
gi|21542319|sp|Q92N66|CLPS2_RHIME RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
gi|15075379|emb|CAC46935.1| Putative ATP-dependent Clp protease adapter protein clpS 2
[Sinorhizobium meliloti 1021]
Length = 101
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
DN + ++ K+ PKLY+VLLVND++TP EFV+ VL+ F E +M+ H
Sbjct: 2 SDNDVAAKRLTKPKLERPKLYKVLLVNDDFTPREFVVMVLKAVFRMSEEAGYRVMMTAHK 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
GI V A ++AE K + + ++ +PL E +
Sbjct: 62 MGISVVVVCAKDVAETKAKEATDLGKEAGFPLLFTAEPE 100
>gi|323693039|ref|ZP_08107259.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
symbiosum WAL-14673]
gi|323502920|gb|EGB18762.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
symbiosum WAL-14673]
Length = 100
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ + S+VRVPK Y V++ ND+YTPM+FV+ VL F K E A +M+ VH
Sbjct: 2 STKGEIRQQTKSQVRVPKRYSVIMHNDDYTPMDFVVRVLMEIFNKRKEEAVMLMMMVHKG 61
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G G+Y+Y+IA K+ V + + YP + +E++
Sbjct: 62 GKAVVGMYSYDIALTKIRLVTALAEEEGYPFRLTVEEQ 99
>gi|323485967|ref|ZP_08091299.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
symbiosum WAL-14163]
gi|323400729|gb|EGA93095.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
symbiosum WAL-14163]
Length = 100
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ + S+VRVPK Y V++ ND+YTPM+FV+ VL F K E A +M+ VH
Sbjct: 2 STKGEIRQQTKSQVRVPKRYSVIMHNDDYTPMDFVVQVLMEIFNKRKEEAVMLMMMVHKG 61
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G G+Y+Y+IA K+ V + + YP + +E++
Sbjct: 62 GKAVVGMYSYDIALTKIRLVTALAEEEGYPFRLTVEEQ 99
>gi|160888888|ref|ZP_02069891.1| hypothetical protein BACUNI_01308 [Bacteroides uniformis ATCC 8492]
gi|156861787|gb|EDO55218.1| hypothetical protein BACUNI_01308 [Bacteroides uniformis ATCC 8492]
Length = 103
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 53/96 (55%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + ++R P+ ++V + ND++T MEFV+ VL FYK A+ +ML+VH
Sbjct: 5 QSSFKEKERIELREPRRFKVTIYNDDFTTMEFVVKVLTTVFYKSSAEAETLMLQVHKSNS 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y+Y+IA KV + +R +PL+ + +
Sbjct: 65 AVVGIYSYDIAHSKVQKATRMARNEGFPLRLTVTPE 100
>gi|223040454|ref|ZP_03610728.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
rectus RM3267]
gi|222878304|gb|EEF13411.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
rectus RM3267]
Length = 103
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 60/98 (61%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ +V K P+ ++V+L+ND+ T M+FV+ VL F+ ++A +MLK+H++
Sbjct: 6 STERERDVALKEKPEFPRKFKVVLLNDDVTSMDFVVSVLVEIFHHTTQSAVTVMLKIHNE 65
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G G GVYA EIA+ K + V+ + YPL+ I+E++
Sbjct: 66 GSGIAGVYAKEIAQTKQSDVLKAAAVAGYPLKAIIEEE 103
>gi|307305663|ref|ZP_07585410.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
meliloti BL225C]
gi|307317666|ref|ZP_07597105.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
meliloti AK83]
gi|306896824|gb|EFN27571.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
meliloti AK83]
gi|306902366|gb|EFN32962.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
meliloti BL225C]
Length = 101
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
DN + ++ K+ PKLY+VLLVND++TP EFV+ VL+ F E +M+ H
Sbjct: 2 SDNDVAAKRLTKPKLERPKLYKVLLVNDDFTPREFVVMVLKAVFRMSEEAGYRVMMTAHK 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G V A ++AE K + + ++ +PL E +
Sbjct: 62 MGTSVVVVCAKDVAETKAKEATDLGKEAGFPLLFTAEPE 100
>gi|116253218|ref|YP_769056.1| ATP-dependent Clp protease adaptor [Rhizobium leguminosarum bv.
viciae 3841]
gi|115257866|emb|CAK08964.1| putative ATP-dependent CLP protease adaptor protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 103
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ D L + + K+ PKLY+V+LVND+YTP E VI +L+ F+ ET +M+
Sbjct: 1 MSDNDIALKPKAKVKLKLDKPKLYKVILVNDDYTPRELVIMILKAVFHMSEETGYRVMMT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G V +IAE K + ++ ++ +PL E +
Sbjct: 61 AHKLGSCVVVVCVRDIAETKAKEGIDLAKGMGFPLMFTTEPE 102
>gi|189463818|ref|ZP_03012603.1| hypothetical protein BACINT_00151 [Bacteroides intestinalis DSM
17393]
gi|189438768|gb|EDV07753.1| hypothetical protein BACINT_00151 [Bacteroides intestinalis DSM
17393]
Length = 102
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 55/96 (57%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + + +R P+ ++V++ ND++T MEFV+ +L F+K A+ +ML+VH
Sbjct: 5 QSSFKEKERTDLREPQHFKVIIFNDDFTTMEFVVKILTTIFFKSAAEAETLMLQVHKSQS 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y Y+IA+ KV + +R+ +PL+ + +
Sbjct: 65 AVVGIYTYDIAQSKVQKATRMAREENFPLRLTVAPE 100
>gi|27377747|ref|NP_769276.1| ATP-dependent Clp protease adaptor [Bradyrhizobium japonicum USDA
110]
gi|37077101|sp|Q89RX6|CLPS1_BRAJA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
gi|27350892|dbj|BAC47901.1| bll2636 [Bradyrhizobium japonicum USDA 110]
Length = 101
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 50/98 (51%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D + R +KV PKL++V+L+ND+YTP EFV +L+ F + A +M+ H
Sbjct: 3 DAVTKPKTRTKTKVERPKLHKVILINDDYTPREFVTMILKAEFRMTEDQAYKVMITAHKL 62
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G V+ ++AE K + + R YPL E +
Sbjct: 63 GACVVAVFTRDVAETKATRATDAGRAKGYPLLFTTEPE 100
>gi|270293657|ref|ZP_06199859.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317479379|ref|ZP_07938513.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides sp.
4_1_36]
gi|270275124|gb|EFA20984.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316904453|gb|EFV26273.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides sp.
4_1_36]
Length = 103
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 53/96 (55%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + ++R P+ ++V + ND++T MEFV+ VL FYK A+ +ML+VH
Sbjct: 5 QSSFKEKERIELREPRRFKVTIYNDDFTTMEFVVKVLTTVFYKSSVEAETLMLQVHKSNS 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y+Y+IA KV + +R +PL+ + +
Sbjct: 65 AVVGIYSYDIAHSKVQKATRMARNEGFPLRLTVTPE 100
>gi|182419260|ref|ZP_02950513.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
butyricum 5521]
gi|237667653|ref|ZP_04527637.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182376900|gb|EDT74471.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
butyricum 5521]
gi|237656001|gb|EEP53557.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 99
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
Y+V++ ND+YT MEFVI +L N F K A+ IML VH +G G G+Y+Y+IA KV
Sbjct: 21 YKVIMHNDDYTTMEFVIKILVNIFNKSFIDAEKIMLDVHKKGRGVAGIYSYDIAITKVAT 80
Query: 120 VMNYSRQHQYPLQCIMEQ 137
M+ ++ +P + E+
Sbjct: 81 AMSMAKSEGFPFKLTTEE 98
>gi|281422658|ref|ZP_06253657.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella copri
DSM 18205]
gi|281403328|gb|EFB34008.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella copri
DSM 18205]
Length = 100
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 58/97 (59%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
R ++++ P Y V++ ND++TPM+FV+ +L++ F+K A+ IMLKVHH+
Sbjct: 4 EQTAIRERQKTRLKEPGRYVVMMFNDDFTPMDFVVEILESIFFKSQAEAEAIMLKVHHEE 63
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G Y+Y+IA+ KV + M +R ++PL+ +
Sbjct: 64 KAVVGTYSYDIAKSKVEKAMEKARTQKFPLKLTYMPE 100
>gi|118602881|ref|YP_904096.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567820|gb|ABL02625.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 99
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 58/77 (75%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
+VLL+ND+YT MEFVI VL FF K E A+ MLK+H +G G CG+++Y+IA+ KV QV
Sbjct: 20 QVLLLNDDYTTMEFVIDVLVQFFSKSEEAAQATMLKIHIEGEGICGIFSYDIAQTKVTQV 79
Query: 121 MNYSRQHQYPLQCIMEQ 137
+ ++R+++ PL C++ +
Sbjct: 80 IEFARKNEQPLICVLRE 96
>gi|212691640|ref|ZP_03299768.1| hypothetical protein BACDOR_01135 [Bacteroides dorei DSM 17855]
gi|212665829|gb|EEB26401.1| hypothetical protein BACDOR_01135 [Bacteroides dorei DSM 17855]
Length = 107
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 52/103 (50%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ + + P+ ++V++ ND++T MEFV+ +L F+K A+ +M+
Sbjct: 3 NTNMEQQQSSYKEKERIDLHEPRRFKVIIFNDDFTTMEFVVKILTTVFFKSTMEAEALMI 62
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+VH G+Y Y+IA KV + +R+ +PL+ + +
Sbjct: 63 QVHKSESAVVGIYTYDIARSKVQKATRMAREEGFPLRLTVTPE 105
>gi|15889508|ref|NP_355189.1| ATP-dependent Clp protease adaptor [Agrobacterium tumefaciens str.
C58]
gi|24638422|sp|Q8UD95|CLPS2_AGRT5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS 2
gi|15157382|gb|AAK87974.1| ATP-dependent Clp protease adaptor protein ClpS [Agrobacterium
tumefaciens str. C58]
Length = 103
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ PKLY+V+L+ND+YTP EFV VL+ F +T + +M+ H G V +IA
Sbjct: 18 LERPKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMTAHRFGSAVVVVCERDIA 77
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
E K + + ++ +PL E +
Sbjct: 78 ETKAKEATDLGKEAGFPLMFTTEPE 102
>gi|325293590|ref|YP_004279454.1| ATP-dependent Clp protease adaptor [Agrobacterium sp. H13-3]
gi|325061443|gb|ADY65134.1| ATP-dependent Clp protease adaptor [Agrobacterium sp. H13-3]
Length = 104
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ PKLY+V+L+ND+YTP +FV VL+ F+ +T +M+ H G V +IA
Sbjct: 19 LERPKLYKVILLNDDYTPRDFVTLVLKVVFHMGEDTGHRVMMTAHRFGSAVVVVCERDIA 78
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
E K + + ++ +PL E +
Sbjct: 79 ETKAKEANDLGKEAGFPLMFTTEPE 103
>gi|237711936|ref|ZP_04542417.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237725805|ref|ZP_04556286.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265753171|ref|ZP_06088740.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|229435613|gb|EEO45690.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229454631|gb|EEO60352.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236357|gb|EEZ21852.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 102
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 52/96 (54%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + + P+ ++V++ ND++T MEFV+ +L F+K A+ +M++VH
Sbjct: 5 QSSYKEKERIDLHEPRRFKVIIFNDDFTTMEFVVKILTTVFFKSTMEAEALMMQVHKSES 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y Y+IA KV + +R+ +PL+ + +
Sbjct: 65 AVVGIYTYDIARSKVQKATRMAREEGFPLRLTVTPE 100
>gi|222086600|ref|YP_002545134.1| hypothetical protein Arad_3194 [Agrobacterium radiobacter K84]
gi|221724048|gb|ACM27204.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 103
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 55/102 (53%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+++ D L + + KV PKLY+++LVND+YTP EFVI VLQ F E +M+
Sbjct: 1 MSDNDVVLKPKTKTKPKVERPKLYKIILVNDDYTPREFVIMVLQAVFRMSEEAGYRVMMT 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G V A +IAE K + ++ ++ +PL E +
Sbjct: 61 AHKLGSCVVMVCARDIAETKAQEAIDLAKSADFPLMFTTEPE 102
>gi|87311880|ref|ZP_01093992.1| hypothetical protein DSM3645_04770 [Blastopirellula marina DSM
3645]
gi|87285411|gb|EAQ77333.1| hypothetical protein DSM3645_04770 [Blastopirellula marina DSM
3645]
Length = 123
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 27 MADSRMNKKGIAEFD---NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF 83
M + +M K+ A D D++ ++ + Y V+L ND+ +FVI L+ F
Sbjct: 1 MGEIQMAKQDAAVADAPATQSDTKTDARNQTKRQPPYVVILHNDDINTFDFVIETLRKVF 60
Query: 84 YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQY------PLQCIMEQ 137
+ E + + VH QG A E+AE+KV+Q+ + Q PL+ +E
Sbjct: 61 GYELEKCLQLTINVHKQGRSAIWSGALEVAELKVDQIRSRGADPQMKSKGALPLRVTLEP 120
>gi|262394728|ref|YP_003286582.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. Ex25]
gi|262338322|gb|ACY52117.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. Ex25]
Length = 67
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 72 MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
M+FVI VL+ FF D + A IMLK+H++G CG Y+ EIAE KV QV Y+R++++PL
Sbjct: 1 MDFVIEVLERFFSHDIDKATQIMLKIHYEGKAICGTYSAEIAETKVAQVTMYARENEHPL 60
Query: 132 QCIMEQ 137
C MEQ
Sbjct: 61 LCTMEQ 66
>gi|226330747|ref|ZP_03806265.1| hypothetical protein PROPEN_04667 [Proteus penneri ATCC 35198]
gi|225201542|gb|EEG83896.1| hypothetical protein PROPEN_04667 [Proteus penneri ATCC 35198]
Length = 67
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 72 MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
M+FV+ VL +F+ E A IML VHH+G G CGVY+ +IAE KV QV Y+R+++YPL
Sbjct: 1 MDFVVEVLTMYFFLSEEKATQIMLDVHHKGKGVCGVYSADIAETKVAQVNLYARENEYPL 60
Query: 132 QCIMEQ 137
C +EQ
Sbjct: 61 LCTLEQ 66
>gi|254884992|ref|ZP_05257702.1| ATP-dependent Clp protease adapter protein clpS [Bacteroides sp.
4_3_47FAA]
gi|294776011|ref|ZP_06741507.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides
vulgatus PC510]
gi|254837785|gb|EET18094.1| ATP-dependent Clp protease adapter protein clpS [Bacteroides sp.
4_3_47FAA]
gi|294450149|gb|EFG18653.1| ATP-dependent Clp protease adaptor protein ClpS [Bacteroides
vulgatus PC510]
Length = 107
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 52/103 (50%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ + +R P+ ++V + ND++T MEFV+ +L F+K A+ +M+
Sbjct: 3 NTNMEQQQSSYKEKERIDLREPRRFKVTIFNDDFTTMEFVVKILTTVFFKSTMEAEALMM 62
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+VH G+Y Y+IA KV + +R+ +PL+ + +
Sbjct: 63 QVHKSESAVIGIYTYDIARSKVQKATRMAREEGFPLRLTVTPE 105
>gi|150397465|ref|YP_001327932.1| ATP-dependent Clp protease adaptor [Sinorhizobium medicae WSM419]
gi|150028980|gb|ABR61097.1| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium
medicae WSM419]
Length = 101
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHH 99
+N + ++ K PKLY+VLLVND+YTP EFV+ VL+ F E +M+ H
Sbjct: 2 SENDVAAKRLTRLKPERPKLYKVLLVNDDYTPREFVVMVLKAIFRMSEEAGYRVMMTAHK 61
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G V ++AE K + + ++ +PL E +
Sbjct: 62 LGTSVVVVCEKDVAETKAKEATDLGKEAGFPLLFTAEPE 100
>gi|150003219|ref|YP_001297963.1| hypothetical protein BVU_0633 [Bacteroides vulgatus ATCC 8482]
gi|319640394|ref|ZP_07995118.1| hypothetical protein HMPREF9011_00715 [Bacteroides sp. 3_1_40A]
gi|149931643|gb|ABR38341.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|317387997|gb|EFV68852.1| hypothetical protein HMPREF9011_00715 [Bacteroides sp. 3_1_40A]
Length = 102
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 52/96 (54%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + +R P+ ++V + ND++T MEFV+ +L F+K A+ +M++VH
Sbjct: 5 QSSYKEKERIDLREPRRFKVTIFNDDFTTMEFVVKILTTVFFKSTMEAEALMMQVHKSES 64
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+Y Y+IA KV + +R+ +PL+ + +
Sbjct: 65 AVIGIYTYDIARSKVQKATRMAREEGFPLRLTVTPE 100
>gi|283797982|ref|ZP_06347135.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium sp.
M62/1]
gi|291074282|gb|EFE11646.1| ATP-dependent Clp protease adaptor protein ClpS [Clostridium sp.
M62/1]
gi|295090086|emb|CBK76193.1| Uncharacterized conserved protein [Clostridium cf. saccharolyticum
K10]
Length = 99
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 53/95 (55%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ K++ P LY V++ ND++T M+FV+ +L F+K+HE A +M+ VH+
Sbjct: 4 QTGVKEDTKIKLKKPSLYHVVMHNDDFTTMDFVVEILMTIFHKEHEEAVALMMLVHNIQR 63
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G Y+Y+IA K + +R+ +P + +E+
Sbjct: 64 AVVGTYSYDIARTKAEEAEERAREQGFPFRLSVEE 98
>gi|254462423|ref|ZP_05075839.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacterales
bacterium HTCC2083]
gi|206679012|gb|EDZ43499.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacteraceae
bacterium HTCC2083]
Length = 67
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 50/67 (74%)
Query: 72 MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
MEFV+ +L+ FF +H + IML VH +G+ GV++ EIAE KV QVM+++R+HQ+PL
Sbjct: 1 MEFVVLILERFFGLNHAQSFEIMLTVHQKGVAVVGVFSQEIAETKVGQVMDFARRHQHPL 60
Query: 132 QCIMEQK 138
QC ME++
Sbjct: 61 QCTMEKE 67
>gi|114214762|emb|CAK51544.1| ATP-dependent Clp protease adaptor protein ClpS [Celosia cristata]
Length = 134
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
V + + VL+ ND M +V+ V Q F E A +ML VHH+G
Sbjct: 52 EEVVEPDRPWIVLVWNDPINLMSYVVFVFQKLFGYSREKATSLMLDVHHKGRAVVSSGTR 111
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIME 136
E AE+ V R H++ L ++
Sbjct: 112 EKAELDVF------RLHEHGLWATLQ 131
>gi|39648126|emb|CAE26646.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length = 78
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 63 LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+LVND+YTP EFV+ VL+ F + A +ML H +G+ GV+ ++AE K + +
Sbjct: 2 ILVNDDYTPREFVVSVLKGEFRMTEDQATKVMLTAHQRGVCVVGVFTKDVAETKATRATD 61
Query: 123 YSRQHQYPLQCIMEQK 138
R YPL E +
Sbjct: 62 AGRAKGYPLLFTTEPE 77
>gi|237750929|ref|ZP_04581409.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter bilis
ATCC 43879]
gi|229373374|gb|EEO23765.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter bilis
ATCC 43879]
Length = 107
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M D++ A F+ + E + P++ ++L+ND+YT ++FVI +L F K
Sbjct: 1 MPDNKYEYSDSAHFETLHEVE------IAQPRMQEIILLNDDYTSVDFVITLLMRVFNKS 54
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
A+ I VH+ G G CGVY Y+IAE+K + N+ R PL+ ++
Sbjct: 55 MLDAQTITQFVHNTGEGSCGVYPYDIAELKFSMATNFIRDSGMPLRLVL 103
>gi|262277126|ref|ZP_06054919.1| ATP-dependent Clp protease adaptor protein ClpS [alpha
proteobacterium HIMB114]
gi|262224229|gb|EEY74688.1| ATP-dependent Clp protease adaptor protein ClpS [alpha
proteobacterium HIMB114]
Length = 100
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 63/92 (68%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
S++ F + + PK ++++L+ND++T M+FV+ +L F K + A +MLK+H++G C
Sbjct: 9 SQLEFREQTKKPKFFKLILLNDDFTTMDFVVKILVMFLNKSNHEANFLMLKIHNEGSAIC 68
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
GV+ ++A N++ N+S+ ++ PL+CI+++
Sbjct: 69 GVFPKDVAVTIQNKIHNFSKINKQPLKCIVKE 100
>gi|289706343|ref|ZP_06502701.1| ATP-dependent Clp protease adaptor protein ClpS [Micrococcus luteus
SK58]
gi|289556838|gb|EFD50171.1| ATP-dependent Clp protease adaptor protein ClpS [Micrococcus luteus
SK58]
Length = 120
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 6/118 (5%)
Query: 20 ALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL 79
A + + R + + V++ ND M +V +V
Sbjct: 6 RHDPSAPRAVRPAPGESVPAGATDTALLERPHEDTARDRPWNVVVWNDPVNLMSYVAYVF 65
Query: 80 QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ F A+ +ML+VH +G E AE+ V H Y L +EQ
Sbjct: 66 RTHFGYSAAKAQRLMLEVHERGRSVVATGTKEKAELHV------GAMHGYGLWATLEQ 117
>gi|239917357|ref|YP_002956915.1| hypothetical protein Mlut_08330 [Micrococcus luteus NCTC 2665]
gi|281414160|ref|ZP_06245902.1| hypothetical protein MlutN2_02986 [Micrococcus luteus NCTC 2665]
gi|239838564|gb|ACS30361.1| uncharacterized conserved protein [Micrococcus luteus NCTC 2665]
Length = 120
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 20 ALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL 79
A + R + + V++ ND M +V +V
Sbjct: 6 RHDPSAPRAVRPAPGESAPAGATDTALLERPHEDTARDRPWNVVVWNDPVNLMSYVAYVF 65
Query: 80 QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ F A+ +ML+VH +G E AE+ V H Y L +EQ
Sbjct: 66 RTHFGYSAAKAQRLMLEVHERGRSVVATGTKEKAELHV------GAMHGYGLWATLEQ 117
>gi|288801352|ref|ZP_06406806.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
oral taxon 299 str. F0039]
gi|288331735|gb|EFC70219.1| ATP-dependent Clp protease adaptor protein ClpS [Prevotella sp.
oral taxon 299 str. F0039]
Length = 101
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+ + + K+ P+ Y++L+ ND T M+FV+H+L + F K+ A +M+ +H +G
Sbjct: 7 KVKDKINQKISEPRKYKILMYNDEVTTMDFVVHLLMHVFNKNKAVAYELMMTIHQKGSAL 66
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPL--QCIMEQ 137
GVY+Y++A+ K+ Q +PL +C++++
Sbjct: 67 VGVYSYDVAQTKMEQAKEIIAHSGFPLVIKCLIDK 101
>gi|261210696|ref|ZP_05924988.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. RC341]
gi|260840181|gb|EEX66761.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio sp. RC341]
Length = 67
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 46/66 (69%)
Query: 72 MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
M+FVI +L+ FF D E A +MLKVH++G CG + E+AE KV QV YSR++++PL
Sbjct: 1 MDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAEVAETKVAQVTMYSRENEHPL 60
Query: 132 QCIMEQ 137
C MEQ
Sbjct: 61 LCTMEQ 66
>gi|148925993|ref|ZP_01809679.1| hypothetical protein Cj8486_0964c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|145845472|gb|EDK22564.1| hypothetical protein Cj8486_0964c [Campylobacter jejuni subsp.
jejuni CG8486]
Length = 82
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
++ +K+ PK+Y+V+L+ND+ T M+FVI +L N F+++ E A ML++HH G G
Sbjct: 3 KTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGI 62
Query: 105 CGVYAYEIAEMKVNQVM 121
CG+Y EIA K +V
Sbjct: 63 CGIYTQEIALSKQKKVN 79
>gi|254456189|ref|ZP_05069618.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Pelagibacter sp. HTCC7211]
gi|207083191|gb|EDZ60617.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Pelagibacter sp. HTCC7211]
Length = 95
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+++ RF + P LY V+ +ND T +EF+I VL++ F K+H+ A + K+H +G G
Sbjct: 1 MNNSFRFETNFNNPILYEVIFLNDQVTTIEFIIRVLKHIFNKEHKHALKLTRKIHEEGYG 60
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
G Y YEIA K + +R +PL+ ++
Sbjct: 61 VVGSYIYEIAGQKELETSLMARDENFPLRVVI 92
>gi|109946679|ref|YP_663907.1| hypothetical protein Hac_0045 [Helicobacter acinonychis str.
Sheeba]
gi|109713900|emb|CAJ98908.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 91
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 54/85 (63%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
K+ +P + V+++ND T EFVI L++ F K E A+ +ML +HH G G CGVY YEI
Sbjct: 5 KIPIPTMSGVIMLNDPVTKAEFVISTLRDVFDKSLEEAQDLMLSIHHNGDGVCGVYPYEI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A K V + +R ++PL+ ++++
Sbjct: 65 AIYKAVCVRDKARALKFPLRLMVQE 89
>gi|219848162|ref|YP_002462595.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus
aggregans DSM 9485]
gi|219542421|gb|ACL24159.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus
aggregans DSM 9485]
Length = 107
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
++ P YRV++ ND+ TPM+FV+ VL+ FF D A+ +ML H++G V +
Sbjct: 21 DEELERP--YRVIVQNDDVTPMDFVVIVLRVFFGLDLARAEQVMLTAHYEGRALVTVLPF 78
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A+ +V Q + +R+ YPL +E
Sbjct: 79 QEAQERVYQAHHAAREAGYPLTFYLEPD 106
>gi|317010313|gb|ADU84060.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pylori SouthAfrica7]
Length = 91
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
K+ P + +V+++ND+ T EFVI L++FF K + AK +ML +H G G CGVY Y+I
Sbjct: 5 KIPTPTMSQVIMLNDSITTAEFVISALRDFFDKPLKEAKELMLSIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R +PL+ ++E+
Sbjct: 65 ARYRAACVKDKARALNFPLRLLVEE 89
>gi|315926527|gb|EFV05908.1| ATP-dependent Clp protease adaptor protein ClpS family protein
[Campylobacter jejuni subsp. jejuni DFVF1099]
Length = 106
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
++ +K+ PK+Y+V+L+ND+ T M+FVI +L N F+++ E A ML++HH G G
Sbjct: 3 KTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGI 62
Query: 105 CGVYAYEIAEMKVNQV 120
CG+Y EIA K ++
Sbjct: 63 CGIYTQEIALSKQKKL 78
>gi|163848160|ref|YP_001636204.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus
aurantiacus J-10-fl]
gi|222526063|ref|YP_002570534.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus sp.
Y-400-fl]
gi|163669449|gb|ABY35815.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus
aurantiacus J-10-fl]
gi|222449942|gb|ACM54208.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroflexus sp.
Y-400-fl]
Length = 108
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ V ++ P YRV++ ND+ TPM+FV+ VL+ FF D A+ +ML H++G
Sbjct: 12 PAVSFAVASDEELERP--YRVIVQNDDVTPMDFVVIVLRVFFGLDLARAEQVMLTAHYEG 69
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
V + A+ +V Q + +R+ YPL +E
Sbjct: 70 RALVTVLPLQEAQERVYQAHHAAREAGYPLTFYLEPD 106
>gi|170782479|ref|YP_001710812.1| atp-dependent Clp protease adaptor protein ClpS [Clavibacter
michiganensis subsp. sepedonicus]
gi|169157048|emb|CAQ02221.1| atp-dependent Clp protease adaptor protein ClpS [Clavibacter
michiganensis subsp. sepedonicus]
Length = 124
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
G S+ + P ++ ++ ND M +V +V +++F E A +ML
Sbjct: 26 GDPGSGTSTGSDTSLLERASTPPVWSCVVWNDPVNLMTYVSYVFRSYFGFTRERADELML 85
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+VH G E E V + H + L +E+
Sbjct: 86 RVHEDGRAVVATGIREEIERHVLAM------HGFGLWATLER 121
>gi|332180262|gb|AEE15950.1| ATP-dependent Clp protease adapter protein clpS [Treponema
brennaborense DSM 12168]
Length = 110
Score = 97.6 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 59/109 (54%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHE 88
+ N + E N +++ V +++ P+ V L+ND++T EFV+ VL F+K E
Sbjct: 1 MEKQNGNEVRETGNGVEAVVDSYNEIMEPRDCTVFLLNDDFTTKEFVVEVLTAIFHKGTE 60
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A +M VH QG GVYA +IA + +R++ +PL+C +E+
Sbjct: 61 EATVLMETVHMQGKAAVGVYARDIAVTLAALTVKTARENGFPLRCELEE 109
>gi|257069152|ref|YP_003155407.1| hypothetical protein Bfae_20090 [Brachybacterium faecium DSM 4810]
gi|256559970|gb|ACU85817.1| uncharacterized conserved protein [Brachybacterium faecium DSM
4810]
Length = 107
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
Query: 34 KKGIAEFDNCLDSEVR----FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
+ D S + + ++ ND M +V+ V + +F H
Sbjct: 2 PVDLPRADPGTGSRTDLAGSVQGTLEADGPWCTVVWNDPVNLMSYVVFVFRRYFGYSHLV 61
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A+ +M++VH +G + E AE V + H + LQ +E+
Sbjct: 62 AEQLMMQVHEEGRAIVSRGSRERAETDVQAM------HSFGLQATLER 103
>gi|121489819|emb|CAK19331.1| putative adaptor protein ClpS [Physcomitrella patens]
Length = 155
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Query: 10 YHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNY 69
++RV + S +++ I + +SE K ++ YRV+L NDN+
Sbjct: 30 HNRVNGRYKINAASGPSQGGGVLDRPTIDKPTPGRESEFDLKKKKKISPPYRVMLHNDNF 89
Query: 70 TPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQ 128
E+V+ VL + A +M + H G+ V E AE Q+ R +
Sbjct: 90 NKREYVVQVLMKAIPGMTVDIAVNVMNEAHINGLAVVIVCPQEDAEDYCMQL----RTNG 145
Query: 129 YPLQCIMEQ 137
L +E
Sbjct: 146 --LLSSIEP 152
>gi|168702735|ref|ZP_02735012.1| ATP-dependent Clp protease adaptor protein ClpS [Gemmata
obscuriglobus UQM 2246]
Length = 110
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
MA++ + E + + + Y V+L ND+ M+FV+ VL+ F
Sbjct: 1 MANATPTPDVVPEEETETRTRRQ--------PPYAVVLHNDDTNTMDFVVTVLRKVFGYT 52
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYS-----RQHQYPLQCIMEQ 137
E +ML+ H QG + A E+AE+K +Q+ ++ ++ +PL +E
Sbjct: 53 VEKCVELMLEAHTQGKVAVWIGALEVAELKADQIKSFGPDPHVTKNGHPLGVTVEP 108
>gi|209523998|ref|ZP_03272550.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira maxima
CS-328]
gi|209495670|gb|EDZ95973.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira maxima
CS-328]
Length = 117
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIM 94
+ + + S+ ++ YRVLL ND+Y PME+V+ VL A IM
Sbjct: 19 NGGDGSVSTQTVEKTSTNRKLAPRYRVLLHNDDYNPMEYVVQVLMSTVPGLTQPQAVSIM 78
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
++ H G+ A E AE + N + L +E
Sbjct: 79 MEAHTNGLALVITCALEHAEFYCETLKN------HGLTSTIEPD 116
>gi|295115732|emb|CBL36579.1| Uncharacterized conserved protein [butyrate-producing bacterium
SM4/1]
Length = 99
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 53/95 (55%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ K++ P LY V++ ND++T M+FV+ +L F+K+HE A +M+ VH+
Sbjct: 4 QTGVKEDTKIKLKKPSLYHVVMHNDDFTTMDFVVEILMTIFHKEHEEAVALMMLVHNIQR 63
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G Y+Y+IA + + +R+ +P + +E+
Sbjct: 64 AVVGTYSYDIARTRAEEAEERAREQGFPFRLSVEE 98
>gi|300789536|ref|YP_003769827.1| ATP-dependent Clp protease adaptor protein ClpS [Amycolatopsis
mediterranei U32]
gi|299799050|gb|ADJ49425.1| ATP-dependent Clp protease adaptor protein ClpS [Amycolatopsis
mediterranei U32]
Length = 99
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
E + +R ++ ND M +V +V Q F + A +ML V
Sbjct: 4 PVASEQTQVEPAGAEVAESDTPWRTVVWNDPVNLMSYVTYVFQKLFGYSRDHATKLMLDV 63
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H +G + E E V ++ H L MEQ
Sbjct: 64 HQKGKAIVSSGSKEKVETDV------AKLHAAGLWATMEQ 97
>gi|325963805|ref|YP_004241711.1| hypothetical protein Asphe3_24470 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469892|gb|ADX73577.1| uncharacterized conserved protein [Arthrobacter phenanthrenivorans
Sphe3]
Length = 127
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M S E E S + +++ ND M +V +V Q++F
Sbjct: 1 MTLSVALGPDTQEGTRTGTVE-STDSLTAPDIPWNLVIWNDPVNLMSYVSYVFQSYFGYS 59
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A +M++VH +G + E E + H + L +E+
Sbjct: 60 ESKANKLMMEVHKKGRSIVASGSKEQVERHAVAM------HGFGLWATVEK 104
>gi|307636717|gb|ADN79167.1| ATP-dependent Clp protease adaptor protein [Helicobacter pylori
908]
gi|325995303|gb|ADZ50708.1| ATP-dependent Clp protease adaptor protein [Helicobacter pylori
2018]
gi|325996901|gb|ADZ49109.1| ATP-dependent Clp protease adaptor protein [Helicobacter pylori
2017]
Length = 89
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 55/85 (64%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
++ P + +V+++ND+ T EF++ L++FF K E A+ +ML +H G G CGVY YEI
Sbjct: 3 QIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQELMLSIHRDGDGVCGVYPYEI 62
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A K V + +R ++PL+ ++++
Sbjct: 63 AIYKAVCVRDKARALRFPLRLMVQE 87
>gi|116671131|ref|YP_832064.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrobacter sp.
FB24]
gi|116611240|gb|ABK03964.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrobacter sp.
FB24]
Length = 122
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ + + +++ ND M +V +V Q++F A +M++VH +
Sbjct: 14 STQTGTVTSTDALTAPDIPWNLVIWNDPVNLMSYVSYVFQSYFGYSEPKANKLMMEVHKK 73
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G + E E + H + L +E+
Sbjct: 74 GRSIVAHGSKEQVEQHAVAM------HGFGLWATVEK 104
>gi|255326292|ref|ZP_05367378.1| ATP-dependent Clp protease adaptor protein ClpS [Rothia
mucilaginosa ATCC 25296]
gi|255296746|gb|EET76077.1| ATP-dependent Clp protease adaptor protein ClpS [Rothia
mucilaginosa ATCC 25296]
Length = 106
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D + + + ++V++ ND M +V +V ++ F A+ +ML+VH+ G
Sbjct: 14 EDTDLDTALENILATDTPWKVIVWNDPVNLMTYVSYVFRSHFGYSRARAEELMLQVHNNG 73
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ E AE K Q M H + L E+
Sbjct: 74 KAIVFTGSREDAE-KHTQAM-----HAWGLLATFEK 103
>gi|207092784|ref|ZP_03240571.1| hypothetical protein HpylHP_08043 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 91
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R ++PL+ ++E+
Sbjct: 65 ARHRAAWVKDKARALEFPLKLLVEE 89
>gi|308183832|ref|YP_003927965.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pylori SJM180]
gi|308059752|gb|ADO01648.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pylori SJM180]
gi|317013455|gb|ADU80891.1| ATP-dependent Clp protease adapter protein ClpS [Helicobacter
pylori Gambia94/24]
Length = 91
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 55/85 (64%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
++ P + +V+++ND+ T EF++ L++FF K E A+ +ML +H G G CGVY YEI
Sbjct: 5 QIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQKLMLSIHRDGDGVCGVYPYEI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A K V + +R ++PL+ ++++
Sbjct: 65 AIYKAVCVRDKARALRFPLRLMVQE 89
>gi|269955856|ref|YP_003325645.1| ATP-dependent Clp protease adaptor protein ClpS [Xylanimonas
cellulosilytica DSM 15894]
gi|269304537|gb|ACZ30087.1| ATP-dependent Clp protease adaptor protein ClpS [Xylanimonas
cellulosilytica DSM 15894]
Length = 106
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
A D + E ++ + + ++ ND M +V +V +++F A+ +ML+V
Sbjct: 6 AGPDLRTEHETDTAASTSLADPWVTIVWNDPVNLMTYVTYVFESYFGYPPARARTLMLQV 65
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H +G E E+ V + H + L M++
Sbjct: 66 HREGRAVVSTGPRERMEVDVQAM------HGFGLWATMQR 99
>gi|208434005|ref|YP_002265671.1| hypothetical protein HPG27_29 [Helicobacter pylori G27]
gi|208431934|gb|ACI26805.1| hypothetical protein HPG27_29 [Helicobacter pylori G27]
Length = 91
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R ++PL+ ++E+
Sbjct: 65 ARHRAAWVRDKARALEFPLKLLVEE 89
>gi|326538898|gb|ADZ87113.1| ATP-dependent Clp protease adaptor protein ClpS [Brucella
melitensis M5-90]
Length = 63
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/63 (60%), Positives = 53/63 (84%)
Query: 76 IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
+HVLQ FF K+ + A IML VH+ G+GECGV+ YE+AE KV+QVM+++RQ+Q+PLQC+M
Sbjct: 1 MHVLQRFFQKNLDDATRIMLHVHNHGVGECGVFTYEVAETKVSQVMDFARQNQHPLQCVM 60
Query: 136 EQK 138
E+K
Sbjct: 61 EKK 63
>gi|254503767|ref|ZP_05115918.1| ATP-dependent Clp protease adaptor protein ClpS [Labrenzia
alexandrii DFL-11]
gi|222439838|gb|EEE46517.1| ATP-dependent Clp protease adaptor protein ClpS [Labrenzia
alexandrii DFL-11]
Length = 77
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 63 LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+L+ND+YTP EFV+ +L+ F D A +ML H +G VY ++AE K + ++
Sbjct: 2 VLLNDDYTPREFVVLILKGEFRLDSAQADVVMLTAHQKGACVVSVYPKDVAETKATRAID 61
Query: 123 YSRQHQYPLQCIMEQK 138
+ + YPLQ +E +
Sbjct: 62 AAGRLGYPLQFSVEPE 77
>gi|302529732|ref|ZP_07282074.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
AA4]
gi|302438627|gb|EFL10443.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
AA4]
Length = 102
Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
+ + + +R ++ ND M +V +V Q F + A +ML V
Sbjct: 7 PVASEQTQVDPLGAELAESDQPWRTIVWNDPVNLMSYVTYVFQKLFGYSRDHATKLMLDV 66
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H++G + E E V ++ H L MEQ
Sbjct: 67 HNKGRAIVSSGSKEKVETDV------AKLHAAGLWATMEQ 100
>gi|283458302|ref|YP_003362921.1| hypothetical protein RMDY18_12690 [Rothia mucilaginosa DY-18]
gi|283134336|dbj|BAI65101.1| uncharacterized conserved protein [Rothia mucilaginosa DY-18]
Length = 106
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D + + + ++V++ ND M +V ++ ++ F A+ +ML+VH+ G
Sbjct: 14 EDTDLDTTLENILATDTPWKVIVWNDPVNLMTYVSYIFRSHFGYSRARAEELMLQVHNNG 73
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ E AE K Q M H + L E+
Sbjct: 74 KAIVFTGSREDAE-KHTQAM-----HAWGLLATFEK 103
>gi|271963261|ref|YP_003337457.1| hypothetical protein Sros_1723 [Streptosporangium roseum DSM 43021]
gi|270506436|gb|ACZ84714.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 95
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
R S VR + ++ ND M +V +V Q+ F E A+ +ML VH +G
Sbjct: 10 ERPSIDVRPDLPWLTIVWNDPVNLMSYVTYVFQSVFGYSKEKAEKLMLDVHQKGRAVVSS 69
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L +++
Sbjct: 70 GTREEMERDVQIM------HSYGLWATVQRD 94
>gi|295836847|ref|ZP_06823780.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
SPB74]
gi|197699546|gb|EDY46479.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
SPB74]
Length = 102
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
D+E S L+ L+ ND M +V +V Q++F + A +ML VH++G
Sbjct: 13 DAEAESSVVTEPDLLWITLVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMLDVHNKGRAV 72
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q
Sbjct: 73 VSSGSREEMERDVQAM------HGYGLWATLQQD 100
>gi|296268919|ref|YP_003651551.1| ATP-dependent Clp protease adaptor protein ClpS [Thermobispora
bispora DSM 43833]
gi|296091706|gb|ADG87658.1| ATP-dependent Clp protease adaptor protein ClpS [Thermobispora
bispora DSM 43833]
Length = 95
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+R SS VR + + ++ ND M +V +V Q F A+ +M+ VH G
Sbjct: 10 IRESSDVRSDRPWLTIVWNDPVNLMSYVTYVFQKVFGYPRPKAEKLMMDVHCNGKAVVAS 69
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L ++Q
Sbjct: 70 GTREEMERNVQIL------HSYGLWATVQQD 94
>gi|291571937|dbj|BAI94209.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira
platensis NIES-39]
Length = 117
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIM 94
+ + + S+ ++ YRVLL ND++ PME+V+ VL A IM
Sbjct: 19 NGGDGSVSTQTVEKTSTNRKLAPRYRVLLHNDDHNPMEYVVQVLMSTVPGLTQPQAVSIM 78
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
++ H G+ A E AE + N + L +E
Sbjct: 79 MEAHTNGLALVITCALEHAEFYCETLKN------HGLTSTIEPD 116
>gi|117928898|ref|YP_873449.1| ATP-dependent Clp protease adaptor protein ClpS [Acidothermus
cellulolyticus 11B]
gi|117649361|gb|ABK53463.1| ATP-dependent Clp protease adaptor protein ClpS [Acidothermus
cellulolyticus 11B]
Length = 96
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+A+ R S VR + ++ ND M +V +V Q F E A+ +ML+
Sbjct: 1 MADMSTAPVEVERPESDVRPDTPWVTIVWNDPVNLMSYVTYVFQKLFGYPKEKAEKLMLQ 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH++G E E + +R H + L + +
Sbjct: 61 VHYEGKAVVSTGRREQME------NDAARLHAHGLWATVRR 95
>gi|33633458|emb|CAE08663.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 154
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 9/133 (6%)
Query: 9 MYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKV--RVPKLYRVLLVN 66
R + + + ++ + + + + + Y+VLL N
Sbjct: 27 PESRPSEQVVQRFPLDLNLPNTMAMAVDTPTRSPGGAAVMEKAPERVRKQSPRYKVLLHN 86
Query: 67 DNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSR 125
D ME+V+ L Q + A +M++ H+ G+G V E AE ++
Sbjct: 87 DPVNTMEYVVTTLRQVVPQLSEQDAMAVMIEAHNTGVGLVIVCDLEPAEFYCE--TLKAK 144
Query: 126 QHQYPLQCIMEQK 138
L +E +
Sbjct: 145 ----GLTSTIEPE 153
>gi|220913062|ref|YP_002488371.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrobacter
chlorophenolicus A6]
gi|219859940|gb|ACL40282.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrobacter
chlorophenolicus A6]
Length = 120
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVR----VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
M D + + + +++ ND M +V +V Q++F
Sbjct: 1 MTISVAPGPDTQEGTRTGTAESTDTLAAPDIPWNLVIWNDPVNLMSYVSYVFQSYFGYSE 60
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A +M++VH +G + E E + H + L +E+
Sbjct: 61 AKANKLMMEVHKKGRSIVTHGSKEQVERHAVAM------HGFGLWATVEK 104
>gi|119960571|ref|YP_948295.1| ATP-dependent Clp protease adaptor protein clpS [Arthrobacter
aurescens TC1]
gi|119947430|gb|ABM06341.1| ATP-dependent Clp protease adaptor protein clpS [Arthrobacter
aurescens TC1]
Length = 120
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 39 EFDNCLDSEVRFSSKVRVPK--LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ D + + S+ V + +++ ND M +V +V Q++F A +M++
Sbjct: 10 DIDERTKAAEQSSTDVLTAPDIPWNLVIWNDPVNLMSYVSYVFQSYFGYSESKAHKLMME 69
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VH +G + E E + H + L +E+
Sbjct: 70 VHKKGRSIVAHGSKEQVEQHAVAM------HGFGLWATVEK 104
>gi|254778767|ref|YP_003056872.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
pylori B38]
gi|254000678|emb|CAX28587.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
pylori B38]
Length = 91
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKDLTSSIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R ++PL+ ++E+
Sbjct: 65 ARHRAAWVKDKARALEFPLKLLVEE 89
>gi|171910264|ref|ZP_02925734.1| ATP-dependent Clp protease adaptor protein ClpS [Verrucomicrobium
spinosum DSM 4136]
Length = 98
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
IA D E S + P + V++ ND M +V HV++ F + A+ +M
Sbjct: 2 PSIATPDKQTLVETDPSVALDSP--WHVIIHNDPVNLMSYVAHVIRKIFGYPDKEAQRLM 59
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L+VH +G + E AE V ++ H + L +E+
Sbjct: 60 LQVHQEGRSQVWTGRREKAEHYVREL------HGHQLLATLEK 96
>gi|306819047|ref|ZP_07452764.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
mulieris ATCC 35239]
gi|304648240|gb|EFM45548.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
mulieris ATCC 35239]
Length = 99
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
I + S + P + ++ ND M +V V + +F H+ A+ +M
Sbjct: 2 NSIPGTEYTPSSVAELDRVL--PGQWNTVVWNDAVNLMSYVTWVFKTYFGYSHDRAQTLM 59
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+VH+QG + E E V + Y L +EQ+
Sbjct: 60 KEVHYQGRAVVSAGSREQMEADVLAM------SGYGLWATLEQE 97
>gi|329936567|ref|ZP_08286303.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
griseoaurantiacus M045]
gi|329304082|gb|EGG47964.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
griseoaurantiacus M045]
Length = 105
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+S + + ++ ND M +V +V Q++F + A +ML VHH+G
Sbjct: 13 EKTESAEETFAVPEPDLPWVTIVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMLDVHHKG 72
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q
Sbjct: 73 RAVVSSGSREEMERDVQAM------HGYGLWATLQQD 103
>gi|302761288|ref|XP_002964066.1| hypothetical protein SELMODRAFT_142341 [Selaginella moellendorffii]
gi|302787370|ref|XP_002975455.1| hypothetical protein SELMODRAFT_150531 [Selaginella moellendorffii]
gi|300157029|gb|EFJ23656.1| hypothetical protein SELMODRAFT_150531 [Selaginella moellendorffii]
gi|300167795|gb|EFJ34399.1| hypothetical protein SELMODRAFT_142341 [Selaginella moellendorffii]
Length = 164
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 10 YHRVKRDGILALMSFIFMADSRMNKKGIAE-FDNCLDSEVRFSSKVRVPKLYRVLLVNDN 68
+ R+ + + ++K I +SE K ++ YRV+L NDN
Sbjct: 35 FTRIIASHAVRAALPGGLGGGVLDKPAIETAPTPGRESEFDLRKKKKMAPPYRVILHNDN 94
Query: 69 YTPMEFVIHVLQNF-FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
+ E+V+ VL + A IM + HH G+ V + E AE Q+ R +
Sbjct: 95 FNRREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGLSVVIVCSQEDAEEHCTQL----RAN 150
Query: 128 QYPLQCIMEQ 137
L +E
Sbjct: 151 G--LLSSIEP 158
>gi|156743978|ref|YP_001434107.1| ATP-dependent Clp protease adaptor protein ClpS [Roseiflexus
castenholzii DSM 13941]
gi|156235306|gb|ABU60089.1| ATP-dependent Clp protease adaptor protein ClpS [Roseiflexus
castenholzii DSM 13941]
Length = 109
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ V ++ P YRV++ ND+ TPM+FV+ VL F E + IML+ HH G
Sbjct: 14 PTTEYVVVTEEELERP--YRVIIENDDVTPMDFVVLVLLTIFELGFEQSVAIMLEAHHNG 71
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
YE A+ +V + + +R+ YPL +E
Sbjct: 72 RAHVVTLPYEEAQRRVYEAHHAAREAGYPLSFYLEPD 108
>gi|15644665|ref|NP_206834.1| hypothetical protein HP0032 [Helicobacter pylori 26695]
gi|2495581|sp|P56066|CLPS_HELPY RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|2313107|gb|AAD07101.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 91
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 51/85 (60%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + ++ ++PL+ ++E+
Sbjct: 65 ARHRAAWVRDKAKALEFPLKLLVEE 89
>gi|227875774|ref|ZP_03993902.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
mulieris ATCC 35243]
gi|269977419|ref|ZP_06184391.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
mulieris 28-1]
gi|307700310|ref|ZP_07637350.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
mulieris FB024-16]
gi|227843716|gb|EEJ53897.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
mulieris ATCC 35243]
gi|269934335|gb|EEZ90897.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
mulieris 28-1]
gi|307614521|gb|EFN93750.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
mulieris FB024-16]
Length = 99
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
P + ++ ND M +V V + +F H+ A+ +M +VH+QG + E E
Sbjct: 22 PGQWNTVVWNDAVNLMSYVTWVFKTYFGYSHDRAQTLMKEVHYQGRAVVSAGSREQMEAD 81
Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
V + Y L +EQ+
Sbjct: 82 VLAM------SGYGLWATLEQE 97
>gi|86739577|ref|YP_479977.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp. CcI3]
gi|86566439|gb|ABD10248.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp. CcI3]
Length = 119
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+ + + ++ ND M +V +V Q F A +ML VHH+G V
Sbjct: 35 EEVDETLDDDRPWVTIVWNDPINLMSYVTYVFQKLFGYSKPKATKLMLDVHHKGRASVAV 94
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E R H Y L + Q
Sbjct: 95 GTREEMEADAE------RLHAYGLWATIAQD 119
>gi|302551734|ref|ZP_07304076.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
viridochromogenes DSM 40736]
gi|302469352|gb|EFL32445.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
viridochromogenes DSM 40736]
Length = 105
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+S + + ++ ND M +V +V Q +F + A +ML VHH+G
Sbjct: 15 TESAEEVFAVPEPDVPWVTIVHNDPVNLMSYVTYVFQTYFGYSKDKATKLMLDVHHKGRA 74
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q
Sbjct: 75 VVSSGSREEMERDVQAM------HGYGLWATLQQD 103
>gi|297841589|ref|XP_002888676.1| hypothetical protein ARALYDRAFT_894639 [Arabidopsis lyrata subsp.
lyrata]
gi|297334517|gb|EFH64935.1| hypothetical protein ARALYDRAFT_894639 [Arabidopsis lyrata subsp.
lyrata]
Length = 159
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAK 91
+K I + +SE ++ YRV+L NDN+ E+V+ VL + A
Sbjct: 55 DKPIIEKTTPGRESEFDLRKSKKMAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAV 114
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IM + H G+ V A AE Q+ L +E
Sbjct: 115 NIMQEAHINGLAVVIVCAQADAEQHCMQLR------GNGLLSSVEPD 155
>gi|168014848|ref|XP_001759963.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688713|gb|EDQ75088.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 112
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV-LQNFFYKDHETA 90
M++ I + +SE K ++ YRV+L NDN+ E+V+ V L+ + A
Sbjct: 11 MDRPTIDKPTPGRESEFDLKKKKKMSPPYRVMLHNDNFNKREYVVQVLLKAIPGMTVDIA 70
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+M + H GI V E AE Q+ R + L +E
Sbjct: 71 VNVMNEAHINGIAVVIVCPQEDAEDYCMQL----RTNG--LLSSIEPD 112
>gi|294629594|ref|ZP_06708154.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
e14]
gi|292832927|gb|EFF91276.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
e14]
Length = 105
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+S + + ++ ND M +V +V Q +F + A +ML VHH+G
Sbjct: 13 EKTESAEEVFAVPEPDVPWVTIVHNDPVNLMSYVTYVFQTYFGYSKDKATKLMLDVHHKG 72
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q
Sbjct: 73 RAVVSSGSREEMERDVQAM------HGYGLWATLQQD 103
>gi|29831702|ref|NP_826336.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
avermitilis MA-4680]
gi|37076982|sp|Q82D28|CLPS_STRAW RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|29608818|dbj|BAC72871.1| putative ATP-dependent Clp protease adaptor protein [Streptomyces
avermitilis MA-4680]
Length = 105
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+S + + ++ ND M +V +V Q +F + A +ML VHH+G
Sbjct: 13 EKTESAEEVFAVPEPDVPWVTIVHNDPVNLMSYVTYVFQTYFGYSKDKATKLMLDVHHKG 72
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L ++Q
Sbjct: 73 RAVVSSGTREEMERDVQAM------HGYGLWATLQQD 103
>gi|309791687|ref|ZP_07686179.1| ATP-dependent Clp protease adaptor protein ClpS [Oscillochloris
trichoides DG6]
gi|308226309|gb|EFO80045.1| ATP-dependent Clp protease adaptor protein ClpS [Oscillochloris
trichoides DG6]
Length = 107
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
L V + P YRV++ ND+ TPM+FV+ VL+ FF A +ML HHQG
Sbjct: 12 PDLTFIVANREDLEKP--YRVIVENDDVTPMDFVVMVLRLFFGLALNDAMQVMLTAHHQG 69
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+E A+ +V +R+ YPL +E
Sbjct: 70 RALVTTMPFEEAKERVYSAHTVAREEGYPLTFYLEPD 106
>gi|18409086|ref|NP_564937.1| unknown protein [Arabidopsis thaliana]
gi|5734712|gb|AAD49977.1|AC008075_10 ESTs gb|T41781 and gb|AA586096 come from this gene [Arabidopsis
thaliana]
gi|12484207|gb|AAG54002.1|AF336921_1 unknown protein [Arabidopsis thaliana]
gi|15010628|gb|AAK73973.1| At1g68660/F24J5_4 [Arabidopsis thaliana]
gi|21464569|gb|AAM52239.1| At1g68660/F24J5_4 [Arabidopsis thaliana]
gi|21553930|gb|AAM63011.1| unknown [Arabidopsis thaliana]
gi|332196703|gb|AEE34824.1| ATP-dependent Clp protease adaptor protein ClpS [Arabidopsis
thaliana]
Length = 159
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 7/121 (5%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
L+ + + ++K I + +SE ++ YRV+L NDN+ E+V+ V
Sbjct: 41 LSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQV 100
Query: 79 LQNF-FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L + A IM + H G+ V A AE Q+ L +E
Sbjct: 101 LMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCMQLR------GNGLLSSVEP 154
Query: 138 K 138
Sbjct: 155 D 155
>gi|317011887|gb|ADU82495.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pylori Lithuania75]
Length = 91
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A +V V + +R+ PL+ ++E+
Sbjct: 65 ARHRVAWVRDKARELDLPLKLLVEE 89
>gi|291439367|ref|ZP_06578757.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
ghanaensis ATCC 14672]
gi|291342262|gb|EFE69218.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
ghanaensis ATCC 14672]
Length = 105
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+S + + ++ ND M +V +V Q +F + A +ML VHH+G
Sbjct: 15 TESAEEVFAVPEPDVPWVTIVHNDPVNLMSYVTYVFQTYFGYSKDKATKLMLDVHHKGRA 74
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L ++Q
Sbjct: 75 IVSSGTREEMERDVQAM------HGYGLWATLQQD 103
>gi|317008709|gb|ADU79289.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pylori India7]
Length = 91
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMVQVIMVDDPITTAEFVISALRDFFDKSLEEAKDLTSSIHRDGCGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A +V V + +R+ PL+ ++E+
Sbjct: 65 ARHRVAWVRDKARELDLPLKLLVEE 89
>gi|297379256|gb|ADI34143.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pylori v225d]
Length = 91
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E A+ + +H G G CGVY Y+I
Sbjct: 5 DIPTPTMVQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A +V V + +R+ PL+ ++E+
Sbjct: 65 ARHRVAWVRDKARELDLPLKLLVEE 89
>gi|317124454|ref|YP_004098566.1| ATP-dependent Clp protease adaptor protein ClpS [Intrasporangium
calvum DSM 43043]
gi|315588542|gb|ADU47839.1| ATP-dependent Clp protease adaptor protein ClpS [Intrasporangium
calvum DSM 43043]
Length = 107
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 6/112 (5%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M+ S + V + ++ ND M +V V + +F
Sbjct: 1 MSTSLSLAPPAPVRSPETEEVTGTDDLVAPDVPWVTIVWNDPVNLMSYVTWVFETYFGYP 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A+ +M+ VH +G E E + Y L E+
Sbjct: 61 RPKAEKLMMDVHTKGRAVVSHGPRESMERDAESLQ------GYGLWATFEKD 106
>gi|225423913|ref|XP_002281884.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|147853628|emb|CAN80233.1| hypothetical protein VITISV_037190 [Vitis vinifera]
Length = 157
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 15 RDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEF 74
R ++A+ + + + I + +SE ++ YRV+L NDNY E+
Sbjct: 35 RSFLMAISASGPGKGGLLERPVIEKVTPGRESEFDLRKSRKIAPPYRVILHNDNYNKREY 94
Query: 75 VIHVLQNF-FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQC 133
V+ VL + A IM + H+ G+ + A AE Q+ L
Sbjct: 95 VVQVLMKVIPGMTLDNAVNIMQEAHYNGLSVVIICAQADAEDHCMQLR------GNGLLS 148
Query: 134 IMEQ 137
+E
Sbjct: 149 SIEP 152
>gi|188526842|ref|YP_001909529.1| hypothetical protein HPSH_00160 [Helicobacter pylori Shi470]
gi|188143082|gb|ACD47499.1| hypothetical protein HPSH_00160 [Helicobacter pylori Shi470]
gi|308062902|gb|ADO04789.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pylori Sat464]
Length = 91
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E A+ + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSNIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R+ PL+ ++E+
Sbjct: 65 ARHRAAWVRDKARELDLPLKLLVEE 89
>gi|261838675|gb|ACX98441.1| hypothetical protein KHP_1249 [Helicobacter pylori 51]
gi|317179574|dbj|BAJ57362.1| hypothetical protein HPF30_1265 [Helicobacter pylori F30]
Length = 91
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E A+ + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R+ PL+ ++E+
Sbjct: 65 ARHRAAWVRDKARELDLPLKLLVEE 89
>gi|238063125|ref|ZP_04607834.1| ATP-dependent Clp protease adaptor protein clpS [Micromonospora sp.
ATCC 39149]
gi|237884936|gb|EEP73764.1| ATP-dependent Clp protease adaptor protein clpS [Micromonospora sp.
ATCC 39149]
Length = 96
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
+ + P + ++ +D M +V V Q F E A+ +ML V
Sbjct: 4 PQVAPVETPDTEEVPVSDRP--WVTIVWDDPVNLMSYVTWVFQKLFGYSRERAEKLMLDV 61
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
HH+G A E E + ++ H Y L +E+
Sbjct: 62 HHKGRAVVSTGARERME------HDAAQLHAYGLWATVER 95
>gi|207110450|ref|ZP_03244612.1| hypothetical protein HpylH_15368 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 82
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+I
Sbjct: 3 NIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDI 62
Query: 113 AEMKVNQVMNYSRQHQYPLQ 132
A + V + +R ++PL+
Sbjct: 63 ARHRAAWVKDKARALEFPLK 82
>gi|72162771|ref|YP_290428.1| ATP-dependent Clp protease adaptor protein ClpS [Thermobifida fusca
YX]
gi|71916503|gb|AAZ56405.1| conserved hypothetical protein [Thermobifida fusca YX]
Length = 96
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E R +R + ++ ND M +V +V Q F A+ +M VH++G
Sbjct: 10 EPRIGEDIRPDLPWVTIVWNDPVNLMSYVTYVFQKVFGYPKAKAQKLMEDVHYKGKAVVS 69
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + HQY L ++Q
Sbjct: 70 SGTREEMERYVTIL------HQYGLWATLQQD 95
>gi|159899721|ref|YP_001545968.1| ATP-dependent Clp protease adaptor protein ClpS [Herpetosiphon
aurantiacus ATCC 23779]
gi|159892760|gb|ABX05840.1| ATP-dependent Clp protease adaptor protein ClpS [Herpetosiphon
aurantiacus ATCC 23779]
Length = 113
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
D LD ++ P YRV+L ND+ TPME V+ VL+ F + E AK IM++ H
Sbjct: 15 TTDVELDFITLSDEELEKP--YRVILQNDDITPMEVVVWVLEKVFEQSFEQAKRIMIEAH 72
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+G + ++ A +V + +R +PL +E
Sbjct: 73 VKGHALVTILPFKEASARVYSAQSRARDMGFPLVLFLEPD 112
>gi|108562455|ref|YP_626771.1| hypothetical protein HPAG1_0030 [Helicobacter pylori HPAG1]
gi|107836228|gb|ABF84097.1| hypothetical protein HPAG1_0030 [Helicobacter pylori HPAG1]
Length = 91
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTAEFVISALKDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R+ PL+ ++E+
Sbjct: 65 ARHRAAWVRDKARELDLPLKLLVEE 89
>gi|148272450|ref|YP_001222011.1| putative ATP-dependent Clp protease adaptor protein [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147830380|emb|CAN01315.1| putative ATP-dependent Clp protease adaptor protein [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 124
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
G S+ + P ++ ++ ND M +V +V +++F E A +ML
Sbjct: 26 GDPGSGTRTGSDTSLLERASTPPVWSCVVWNDPVNLMTYVSYVFRSYFGFPRERADELML 85
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+VH G E E V + H Y L +E+
Sbjct: 86 RVHEDGRAVVATGIREEIERHVLAM------HVYGLWATLER 121
>gi|298345219|ref|YP_003717906.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
curtisii ATCC 43063]
gi|304390779|ref|ZP_07372731.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|315655641|ref|ZP_07908539.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
curtisii ATCC 51333]
gi|315656444|ref|ZP_07909333.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|298235280|gb|ADI66412.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
curtisii ATCC 43063]
gi|304325662|gb|EFL92908.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|315489705|gb|EFU79332.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
curtisii ATCC 51333]
gi|315493003|gb|EFU82605.1| ATP-dependent Clp protease adaptor protein ClpS [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 100
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
P + ++ ND M +V V + +F HE A+ +M +VH +G E E
Sbjct: 23 PGQWNTVVWNDAVNLMSYVTWVFKTYFGYSHERAEHLMKEVHFKGRAVVSAGTREQMEAD 82
Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
V + +Y L +EQ+
Sbjct: 83 VLAM------SEYGLWATLEQE 98
>gi|297200007|ref|ZP_06917404.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sviceus ATCC 29083]
gi|197710480|gb|EDY54514.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
sviceus ATCC 29083]
Length = 105
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+S + + ++ ND M +V +V Q +F + A +ML VHH+G
Sbjct: 15 TESAEEVFAVPEPDVPWVTIVHNDPVNLMSYVTYVFQTYFGYSKDKATKLMLDVHHKGRA 74
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q
Sbjct: 75 VVSSGSREEMERDVQAM------HGYGLWATLQQD 103
>gi|21221363|ref|NP_627142.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
coelicolor A3(2)]
gi|289771355|ref|ZP_06530733.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
lividans TK24]
gi|5531365|emb|CAB50997.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|289701554|gb|EFD68983.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
lividans TK24]
Length = 105
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+S + + ++ ND M +V +V Q++F + A +M+ VHH+G
Sbjct: 13 EKTESAEEVFAVPEPDVPWVTIVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMMDVHHKG 72
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q
Sbjct: 73 RAVVSSGSREEMERDVQAM------HGYGLWATLQQD 103
>gi|210134229|ref|YP_002300668.1| ATP-dependent clp protease adapter protein ClpS [Helicobacter
pylori P12]
gi|210132197|gb|ACJ07188.1| ATP-dependent clp protease adapter protein ClpS [Helicobacter
pylori P12]
Length = 91
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+IA +
Sbjct: 9 PTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDIARHR 68
Query: 117 VNQVMNYSRQHQYPLQCIMEQ 137
V + +R+ PL+ ++E+
Sbjct: 69 AAWVRDKARELDLPLKLLVEE 89
>gi|317182602|dbj|BAJ60386.1| hypothetical protein HPF57_1312 [Helicobacter pylori F57]
Length = 91
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E A+ + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMVQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R+ PL+ ++E+
Sbjct: 65 ARHRAAWVRDKARELDLPLKLLVEE 89
>gi|15611099|ref|NP_222750.1| hypothetical protein jhp0028 [Helicobacter pylori J99]
gi|12230796|sp|Q9ZN32|CLPS_HELPJ RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|4154533|gb|AAD05612.1| putative [Helicobacter pylori J99]
Length = 90
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
++ P + +V+++ND+ T EF++ L++FF K E A+ +ML +H G G CGVY YEI
Sbjct: 5 QIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQKLMLSIHRDGDGVCGVYPYEI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A K V + +R +PL+ ++++
Sbjct: 65 AIYKAVCVRDKARAR-FPLRLMVQE 88
>gi|308182216|ref|YP_003926343.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pylori PeCan4]
gi|308064401|gb|ADO06293.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pylori PeCan4]
Length = 91
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+I
Sbjct: 5 DIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGCGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R+ PL+ ++E+
Sbjct: 65 ARHRAAWVRDKARELDLPLKLLVEE 89
>gi|254774371|ref|ZP_05215887.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
avium subsp. avium ATCC 25291]
Length = 102
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ + + + + + ++ +D M +V +V Q F A
Sbjct: 1 MSAPTEPKSRPGTTGQRESAPEEVTASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHAT 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML+VH++G + E E+ V S+ H L M+Q
Sbjct: 61 KLMLQVHNEGKAVVSAGSREAMEVDV------SKLHAAGLWATMQQD 101
>gi|308061334|gb|ADO03222.1| ATP-dependent Clp protease adapter protein clpS [Helicobacter
pylori Cuz20]
Length = 91
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E A+ + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGICGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R+ PL+ ++E+
Sbjct: 65 ARHRAAWVRDKARELDLPLKLLVEE 89
>gi|317178096|dbj|BAJ55885.1| hypothetical protein HPF16_1288 [Helicobacter pylori F16]
Length = 93
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E A+ + +H G G CGVY Y+I
Sbjct: 7 NIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDI 66
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R+ PL+ ++E+
Sbjct: 67 ARHRAAWVRDKARELDLPLKLLVEE 91
>gi|224111728|ref|XP_002315955.1| predicted protein [Populus trichocarpa]
gi|222864995|gb|EEF02126.1| predicted protein [Populus trichocarpa]
Length = 162
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAK 91
K I +SE ++ YRV+L NDNY E+V+ VL + A
Sbjct: 58 EKPVIERTTPGRESEFDLRKSKKMAPPYRVILHNDNYNKREYVVQVLMKVIPGMTLDNAV 117
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IM + H+ G+ + AE Q+ L +E
Sbjct: 118 NIMQEAHYNGLSVVIICTQADAEEHCMQLR------GNGLLSSIEP 157
>gi|239930995|ref|ZP_04687948.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
ghanaensis ATCC 14672]
Length = 102
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+S + + ++ ND M +V +V Q +F + A +ML VHH+G
Sbjct: 12 TESAEEVFAVPEPDVPWVTIVHNDPVNLMSYVTYVFQTYFGYSKDKATKLMLDVHHKGRA 71
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L ++Q
Sbjct: 72 IVSSGTREEMERDVQAM------HGYGLWATLQQD 100
>gi|257056896|ref|YP_003134728.1| hypothetical protein Svir_29230 [Saccharomonospora viridis DSM
43017]
gi|256586768|gb|ACU97901.1| uncharacterized conserved protein [Saccharomonospora viridis DSM
43017]
Length = 94
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
+ ++ ++ ND M +V +V Q F E A +ML VHH+G E E
Sbjct: 18 EDRPWQTIVWNDPVNLMSYVTYVFQKIFGYSKEHATKLMLDVHHKGRAVVSSGTKEKVEG 77
Query: 116 KVNQVMNYSRQHQYPLQCIMEQ 137
V ++ H L MEQ
Sbjct: 78 DV------AKLHAAGLWATMEQ 93
>gi|261840072|gb|ACX99837.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
pylori 52]
Length = 91
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E A+ + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R+ PL+ +E+
Sbjct: 65 ARHRAAWVRDKARELDLPLKLWVEE 89
>gi|317181079|dbj|BAJ58865.1| hypothetical protein HPF32_1283 [Helicobacter pylori F32]
Length = 91
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E AK + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R+ PL+ ++E+
Sbjct: 65 ARHRAAWVRDKARELDLPLKLLVEE 89
>gi|148656369|ref|YP_001276574.1| ATP-dependent Clp protease adaptor protein ClpS [Roseiflexus sp.
RS-1]
gi|148568479|gb|ABQ90624.1| ATP-dependent Clp protease adaptor protein ClpS [Roseiflexus sp.
RS-1]
Length = 113
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
MA + + +E ++ + + YRV++ ND+ TPM+FV+ +L F
Sbjct: 1 MATHMPAEVSVPLTTTIPTTEYVVVTEDELERPYRVIIENDDVTPMDFVVLILLTIFELG 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E + IML+ HH G YE A+ +V + + +R+ YPL +E
Sbjct: 61 FEQSVAIMLEAHHNGRAHVVTLPYEEAQRRVYEAHHAAREAGYPLSFYLEPD 112
>gi|290960033|ref|YP_003491215.1| ATP-dependent Clp protease adaptor protein [Streptomyces scabiei
87.22]
gi|260649559|emb|CBG72674.1| putative ATP-dependent Clp protease adaptor protein [Streptomyces
scabiei 87.22]
Length = 105
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+S + + ++ ND M +V +V Q +F E A +ML VHH+G
Sbjct: 13 EKTESAEETFAVPEPDVPWLTIVHNDPVNLMSYVTYVFQAYFGYSKEKANKLMLDVHHKG 72
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q
Sbjct: 73 RAVVSSGSREEMERDVQAM------HGYGLWATLQQD 103
>gi|294460817|gb|ADE75982.1| unknown [Picea sitchensis]
Length = 158
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAK 91
+ I + +SE + YRVLL NDNY E+V+ VL +TA
Sbjct: 54 ERPTIEKTTPGRESEFDLRKSRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDTAV 113
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IM + H+ G+ + A AE Q+ L +E
Sbjct: 114 NIMQEAHYNGLAVVIICAQVDAEEHCTQLR------GNGLLSSIEP 153
>gi|328882719|emb|CCA55958.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
venezuelae ATCC 10712]
Length = 101
Score = 91.0 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+S S+ V + L+ ND M +V +V Q++F + A +ML VH++G
Sbjct: 11 TESAEEVSAVVEPDVPWVTLVHNDPVNLMSYVTYVFQSYFGYSKDKAHKLMLDVHNKGRA 70
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L + Q
Sbjct: 71 VVSSGTREEMERDVQAM------HGYGLWATLSQD 99
>gi|315587247|gb|ADU41628.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
pylori 35A]
Length = 91
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E A+ + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +++ PL+ ++E+
Sbjct: 65 ARHRAAWVRDKAKELDLPLRLLVEE 89
>gi|260906183|ref|ZP_05914505.1| ATP-dependent Clp protease adaptor protein ClpS [Brevibacterium
linens BL2]
Length = 101
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
L+ EV K ++ ++ ND M +V +V Q +F E A +ML+VH
Sbjct: 6 TPVLEPEVDIRPVTEQAKPWKTVVFNDPVNLMSYVSYVFQAYFGYSTEKAHSLMLEVHEN 65
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G E E + H+Y L + +
Sbjct: 66 GRSVVATGGREAMERDTQAM------HEYGLWAACQPE 97
>gi|302521553|ref|ZP_07273895.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
SPB78]
gi|302430448|gb|EFL02264.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
SPB78]
Length = 102
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
D+E + + L+ ND M +V +V Q++F + A +ML VH++G
Sbjct: 13 DAEAESFAVAEPDLPWITLVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMLDVHNKGRAV 72
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q
Sbjct: 73 VSSGSREEMERDVQAM------HGYGLWATLQQD 100
>gi|41408527|ref|NP_961363.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
avium subsp. paratuberculosis K-10]
gi|118463948|ref|YP_880786.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
avium 104]
gi|67460344|sp|Q73X80|CLPS_MYCPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|158512435|sp|A0QCZ8|CLPS_MYCA1 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|41396883|gb|AAS04746.1| hypothetical protein MAP_2429c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118165235|gb|ABK66132.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
avium 104]
Length = 105
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ + + + + + ++ +D M +V +V Q F A
Sbjct: 4 MSAPTEPKSRPGTTGQRESAPEDVTASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHAT 63
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML+VH++G + E E+ V S+ H L M+Q
Sbjct: 64 KLMLQVHNEGKAVVSAGSREAMEVDV------SKLHAAGLWATMQQD 104
>gi|256390690|ref|YP_003112254.1| ATP-dependent Clp protease adaptor protein ClpS [Catenulispora
acidiphila DSM 44928]
gi|256356916|gb|ACU70413.1| ATP-dependent Clp protease adaptor protein ClpS [Catenulispora
acidiphila DSM 44928]
Length = 100
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
E D E R + ++ ++ ND M +V +V +F A+ +M +VH
Sbjct: 7 EVDPEATEETRAAPV--QDPMWVTVVWNDPVNLMSYVTYVFMTYFGYSKGKAERMMHEVH 64
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ G E E + + H Y L ++++
Sbjct: 65 NLGKAIVSSGGREQME------KDVAAMHGYGLWATLQRQ 98
>gi|318057187|ref|ZP_07975910.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
SA3_actG]
gi|318079806|ref|ZP_07987138.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
SA3_actF]
Length = 96
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
D+E + + L+ ND M +V +V Q++F + A +ML VH++G
Sbjct: 7 DAEAESFAVAEPDLPWITLVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMLDVHNKGRAV 66
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q
Sbjct: 67 VSSGSREEMERDVQAM------HGYGLWATLQQD 94
>gi|86607127|ref|YP_475890.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
JA-3-3Ab]
gi|86555669|gb|ABD00627.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
JA-3-3Ab]
Length = 93
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGI 102
++ V+ S + +YRVLL ND+ ME+V+ VL + A IML+ H+ G+
Sbjct: 3 TETLVKPSVTPKHMPMYRVLLHNDDVNTMEYVVQVLVKVIPSMLPPQATEIMLEAHNNGV 62
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
V E AE Q+ Q+ L +E +
Sbjct: 63 AVVIVVPREHAEFYCEQLR------QHGLTSSIEPE 92
>gi|255576515|ref|XP_002529149.1| ATP-dependent Clp protease adaptor protein clpS, putative [Ricinus
communis]
gi|223531428|gb|EEF33262.1| ATP-dependent Clp protease adaptor protein clpS, putative [Ricinus
communis]
Length = 120
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAK 91
K I + +SE + YRV+L NDNY E+V+ VL + A
Sbjct: 16 EKPVIEKTTPGRESEFDLRKSRKTAPPYRVILHNDNYNKREYVVQVLMKVIPGMTLDNAV 75
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IM + H+ G+ + A AE Q+ L +E
Sbjct: 76 NIMQEAHYNGLSVVIICAQADAEDHCMQLR------GNGLLSSIEP 115
>gi|256787457|ref|ZP_05525888.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
lividans TK24]
gi|12230769|sp|Q9S2G5|CLPS_STRCO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
Length = 96
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+S + + ++ ND M +V +V Q++F + A +M+ VHH+G
Sbjct: 4 EKTESAEEVFAVPEPDVPWVTIVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMMDVHHKG 63
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q
Sbjct: 64 RAVVSSGSREEMERDVQAM------HGYGLWATLQQD 94
>gi|295396718|ref|ZP_06806864.1| ATP-dependent Clp protease adaptor protein ClpS [Brevibacterium
mcbrellneri ATCC 49030]
gi|294970464|gb|EFG46393.1| ATP-dependent Clp protease adaptor protein ClpS [Brevibacterium
mcbrellneri ATCC 49030]
Length = 97
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E V + ++ ND M +V +V +++F A +M++VH+ G
Sbjct: 10 EPEVDEVVATDSPWVTIVFNDPVNLMSYVTYVFRSYFGYSPAKANKLMMEVHNNGKSVVA 69
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E E + + H + L ++
Sbjct: 70 TGTREEME------RDTAAMHGFGLWATCKK 94
>gi|255630508|gb|ACU15612.1| unknown [Glycine max]
Length = 155
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAK 91
K I + +SE + YRV+L NDN+ E+V+ VL + A
Sbjct: 51 EKPVIEKVTPGRESEFDLKKSRKSAPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAV 110
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IM + H+ G+ + AE Q+ L +E
Sbjct: 111 NIMQEAHYNGLSVVIICDQADAEDHCMQLR------GNGLLSSIEP 150
>gi|294812860|ref|ZP_06771503.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces
clavuligerus ATCC 27064]
gi|294325459|gb|EFG07102.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces
clavuligerus ATCC 27064]
Length = 113
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 10/119 (8%)
Query: 20 ALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL 79
S M + I ++ V + L+ ND M +V +V
Sbjct: 3 RARSGGSMDQVSVAPTEIERPAPAEETFAVPEPDV----PWVTLVHNDPVNLMSYVTYVF 58
Query: 80 QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
Q +F + A+ +ML VH++G + E E V + H Y L + Q
Sbjct: 59 QAYFGYSKDKARKLMLDVHNKGRAVVSSGSREEMERDVQAM------HGYGLWATLSQD 111
>gi|217034530|ref|ZP_03439940.1| hypothetical protein HP9810_897g15 [Helicobacter pylori 98-10]
gi|216943011|gb|EEC22492.1| hypothetical protein HP9810_897g15 [Helicobacter pylori 98-10]
Length = 97
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ P + +V++V+D T EFVI L++FF K E A+ + +H G G CGVY Y+IA
Sbjct: 12 IPTPTMAQVIMVDDPITTAEFVISALRDFFDKSLEEAQALTSSIHRDGEGVCGVYPYDIA 71
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
+ V + +R+ PL+ ++E+
Sbjct: 72 RHRAAWVRDKARELDLPLKLLVEE 95
>gi|239981994|ref|ZP_04704518.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces albus
J1074]
gi|291453845|ref|ZP_06593235.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces albus
J1074]
gi|291356794|gb|EFE83696.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces albus
J1074]
Length = 99
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
+ + + L+ ND M +V +V Q +F E A +ML V
Sbjct: 3 PAETEQPAAAEETFAVPEPDLPWVTLVHNDPVNLMSYVAYVFQAYFGYSKEKANKLMLDV 62
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
HH+G + E E V + H Y L ++Q
Sbjct: 63 HHKGRAVVSSGSREEMERDVQAM------HGYGLWATLQQD 97
>gi|311743607|ref|ZP_07717413.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromicrobium
marinum DSM 15272]
gi|311312737|gb|EFQ82648.1| ATP-dependent Clp protease adaptor protein ClpS [Aeromicrobium
marinum DSM 15272]
Length = 101
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
G+ E V + + ++ ND M +V +V +N+F E A +M
Sbjct: 2 DGVTRTAPVEHREPEVDEAVELEAPWVTIVWNDPVNLMSYVSYVFRNYFGYTDEKATELM 61
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
L VHH+G + E E V + H+Y L +++
Sbjct: 62 LAVHHEGKAVVSTGSREQMERHVQAM------HEYGLWATLQR 98
>gi|255632171|gb|ACU16445.1| unknown [Glycine max]
Length = 155
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAK 91
K I + +SE + YRV+L NDN+ E+V+ VL + A
Sbjct: 51 EKPVIEKVTPGRESEFDLKKSRKSAPPYRVILHNDNFNKREYVVQVLMKVIPGMTLDNAV 110
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IM + H+ G+ + AE Q+ L +E
Sbjct: 111 NIMQEAHYNGLSVVIICDQADAEDHCTQLR------GNGLLSSIEP 150
>gi|302560427|ref|ZP_07312769.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
griseoflavus Tu4000]
gi|302478045|gb|EFL41138.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
griseoflavus Tu4000]
Length = 105
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+S + + ++ ND M +V +V Q++F + A +ML VHH+G
Sbjct: 15 TESAEEVFAVPEPDVPWVTIVHNDPVNLMSYVTYVFQSYFGYSKDKATKLMLDVHHKGRA 74
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L ++
Sbjct: 75 VVSSGTREEMERDVQAM------HGYGLWATLQHD 103
>gi|309813284|ref|ZP_07707000.1| ATP-dependent Clp protease adaptor protein ClpS [Dermacoccus sp.
Ellin185]
gi|308432780|gb|EFP56696.1| ATP-dependent Clp protease adaptor protein ClpS [Dermacoccus sp.
Ellin185]
Length = 106
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
M D + I F+ + + + L+ ND M +V V Q++F
Sbjct: 1 MVDVSIAPPDID-FEQLAKQLADPDPQDVGERAWVTLVWNDPVNLMSYVSFVFQDYFGYS 59
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A+ +M++VH +G + E AE + H Y L EQ+
Sbjct: 60 REEAERLMMQVHTEGRAVVSKGSREKAEADTIAM------HGYSLWATYEQE 105
>gi|86608169|ref|YP_476931.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556711|gb|ABD01668.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 93
Score = 89.9 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGI 102
++ V+ S + +YRVLL ND+ ME+V+ VL + A IML+ HH G+
Sbjct: 3 TETLVKPSVTPKHMPMYRVLLHNDDVNTMEYVVQVLVKVIPAMMPPQATEIMLEAHHNGV 62
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
V E AE Q+ Q+ L +E +
Sbjct: 63 AVVIVVPREHAEFYCEQLR------QHGLTSSIEPE 92
>gi|224099343|ref|XP_002311446.1| predicted protein [Populus trichocarpa]
gi|118481362|gb|ABK92624.1| unknown [Populus trichocarpa]
gi|222851266|gb|EEE88813.1| predicted protein [Populus trichocarpa]
Length = 158
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAK 91
K I +SE ++ YRV+L NDNY E+V+ VL + A
Sbjct: 54 EKPVIERTTPGRESEFDLRKSKKMAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTLDNAV 113
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IM + H+ G+ + A AE Q+ L +E
Sbjct: 114 NIMQEAHYNGLSVVIICAQADAEEHCMQLR------GNGLLSSIEP 153
>gi|217031776|ref|ZP_03437280.1| hypothetical protein HPB128_155g89 [Helicobacter pylori B128]
gi|298737083|ref|YP_003729613.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
pylori B8]
gi|216946623|gb|EEC25223.1| hypothetical protein HPB128_155g89 [Helicobacter pylori B128]
gi|298356277|emb|CBI67149.1| ATP-dependent Clp protease adaptor protein ClpS [Helicobacter
pylori B8]
Length = 91
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ P + +V++V+D T EFVI L++FF K E K + +H G G CGVY Y+I
Sbjct: 5 NIPTPTMAQVIMVDDPITTAEFVISALKDFFDKSLEEVKALTSSIHRDGCGVCGVYPYDI 64
Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
A + V + +R+ +PL+ ++E+
Sbjct: 65 ARHRAAWVRDKARELDFPLKLLVEE 89
>gi|330466047|ref|YP_004403790.1| ATP-dependent clp protease adaptor protein clps [Verrucosispora
maris AB-18-032]
gi|328809018|gb|AEB43190.1| ATP-dependent clp protease adaptor protein clps [Verrucosispora
maris AB-18-032]
Length = 96
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
+ S P + ++ +D M +V V Q F E A+ +ML V
Sbjct: 4 PQVAPVETPATDEVSASDRP--WVTIVWDDPVNLMSYVTWVFQKLFGYSREKAEQLMLDV 61
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
HH+G A E E + ++ H Y L +++
Sbjct: 62 HHKGKAVVSSGARERME------HDAAQLHAYGLWATVDR 95
>gi|269926486|ref|YP_003323109.1| ATP-dependent Clp protease adaptor protein ClpS [Thermobaculum
terrenum ATCC BAA-798]
gi|269790146|gb|ACZ42287.1| ATP-dependent Clp protease adaptor protein ClpS [Thermobaculum
terrenum ATCC BAA-798]
Length = 101
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
++V+L ND+ M++V+ VL E A +ML+ HH G A E AE+ ++
Sbjct: 30 WKVILWNDDVHSMDYVVLVLMRCLGMSLEKATQVMLEAHHNGQSVAWAGAKETAELYQDR 89
Query: 120 VMNYSRQHQYPLQCIMEQ 137
+++ + L +E+
Sbjct: 90 LLS------FGLTATIEK 101
>gi|229494029|ref|ZP_04387798.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
erythropolis SK121]
gi|229319098|gb|EEN84950.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
erythropolis SK121]
Length = 162
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
Query: 20 ALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL 79
A +S + A+ M + + S+ + + ++ +D M +V +V
Sbjct: 48 ATVSGTYSANVTMRGATASSPQATPEQSEAVSTIEAADRPWVTIVWDDPVNLMHYVTYVF 107
Query: 80 QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
Q F A +M++VH +G + + E V R H L M++
Sbjct: 108 QKLFGYSKAKATDLMMQVHSEGKAVVSSGSRDKMEADVR------RLHAAGLWATMQRD 160
>gi|298490087|ref|YP_003720264.1| ATP-dependent Clp protease adaptor protein ClpS ['Nostoc azollae'
0708]
gi|298232005|gb|ADI63141.1| ATP-dependent Clp protease adaptor protein ClpS ['Nostoc azollae'
0708]
Length = 92
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIG 103
++ + S+ ++ YRVLL ND+Y ME+V+ VL A IM++ H+ G+
Sbjct: 4 ETIEKRSTTRKLAPQYRVLLHNDDYNSMEYVVQVLMTSVPSITQPQAVNIMMEAHNSGLA 63
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + + L +E
Sbjct: 64 LVITCAQEHAEFYCETLK------GHGLSSTIEPD 92
>gi|282865136|ref|ZP_06274189.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
ACTE]
gi|282560059|gb|EFB65608.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces sp.
ACTE]
Length = 105
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+S + + L+ ND M +V +V Q +F + A +ML VH +G
Sbjct: 16 ESAEETYTVPEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYSKDKAHKLMLDVHQKGRAV 75
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L + Q
Sbjct: 76 VSSGSREEMERDVQAM------HGYGLWATLTQD 103
>gi|307150896|ref|YP_003886280.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7822]
gi|306981124|gb|ADN13005.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7822]
Length = 99
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHH 99
+ + S+ + YRVLL ND++ ME+V+ L A IM++ H
Sbjct: 6 STQVIEKSSTSTVRKPAPRYRVLLHNDDFNSMEYVVQTLMKTVAGMTQPQAVNIMMEAHT 65
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G+ E AE + + L +E
Sbjct: 66 NGMALVITCTLEHAEFYCETLKA------HGLTSTIEPD 98
>gi|168011584|ref|XP_001758483.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690518|gb|EDQ76885.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 106
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAK 91
++ I + +SE K ++ YRV+L NDN+ E+V+ VL + A
Sbjct: 7 DRPTIDKPTPGRESEFDLKKKKKMSPPYRVMLHNDNFNKREYVVQVLMKAIPGMTVDIAV 66
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+M + H G+ V E AE Q+ R + L +E
Sbjct: 67 NVMNEAHINGLAVVIVCPQEDAEDYCMQL----RTNG--LLSSIEP 106
>gi|311896234|dbj|BAJ28642.1| putative ATP-dependent Clp protease adaptor protein ClpS
[Kitasatospora setae KM-6054]
Length = 92
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
EV + ++ ND M +V HV Q++F E A+ +M+ VH +G
Sbjct: 7 EVEGVPVTEPDTPWVTIVHNDPVNLMSYVQHVFQSYFGYPKEKARRLMMDVHQKGRAVVS 66
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L ++
Sbjct: 67 SGTREEMERDVQAM------HGYGLWATLQHD 92
>gi|311113408|ref|YP_003984630.1| ATP-dependent Clp protease adaptor protein ClpS [Rothia
dentocariosa ATCC 17931]
gi|310944902|gb|ADP41196.1| ATP-dependent Clp protease adaptor protein ClpS [Rothia
dentocariosa ATCC 17931]
Length = 115
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ + + + ++V++ ND M +V +V + F A+ +ML+VH+ G
Sbjct: 23 DATELDATIDENLETQTPWQVIVWNDPVNLMTYVSYVFRAHFGFSRRRAEKLMLQVHNNG 82
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ E AE K Q M H + L E+
Sbjct: 83 KAVVFTGSREDAE-KHTQAM-----HAWGLMASFEK 112
>gi|196234336|ref|ZP_03133165.1| ATP-dependent Clp protease adaptor protein ClpS [Chthoniobacter
flavus Ellin428]
gi|196221603|gb|EDY16144.1| ATP-dependent Clp protease adaptor protein ClpS [Chthoniobacter
flavus Ellin428]
Length = 93
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ ++ E + SS V VP + V++ ND +V V Q F A+ ML+VH+
Sbjct: 3 ETVVEEETKTSSAVDVP--WNVVVHNDPVNLTAYVTRVFQKVFGYSKTRAEKHMLEVHNL 60
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G A E AE V Q+ H Y L +E+
Sbjct: 61 GRSIVWTGARERAEAYVEQL------HGYLLLSTLEK 91
>gi|184200644|ref|YP_001854851.1| ATP-dependent Clp protease adaptor protein ClpS [Kocuria rhizophila
DC2201]
gi|183580874|dbj|BAG29345.1| putative ATP-dependent Clp protease adaptor protein ClpS [Kocuria
rhizophila DC2201]
Length = 116
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+ V++ +D M +V++V + F A+ +ML+VHH G + E AE V+
Sbjct: 40 PWNVVVWDDPVNLMSYVVYVFRAHFGYSDAKARTLMLEVHHSGRSIVFTGSLEEAEAHVS 99
Query: 119 QVMNYSRQHQYPLQCIMEQ 137
+ H Y L E+
Sbjct: 100 SL------HGYGLWATYEK 112
>gi|218438615|ref|YP_002376944.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7424]
gi|218171343|gb|ACK70076.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7424]
Length = 97
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHH 99
+ + S+ + YRVLL ND++ ME+V+ L A IM++ H
Sbjct: 4 STQVIEKSTTSTVRKPAPRYRVLLHNDDFNSMEYVVQTLMKTVAGMTQPQAVNIMMEAHT 63
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G E AE + N + L +E
Sbjct: 64 NGTALVITCTLEHAEFYCETLKN------HGLTSTIEPD 96
>gi|289644636|ref|ZP_06476702.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia symbiont
of Datisca glomerata]
gi|289505564|gb|EFD26597.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia symbiont
of Datisca glomerata]
Length = 99
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ + + + + + ++ ND M +V +V Q F E AK +M
Sbjct: 2 ESVPLATAAPEEVLESDEVAERDRPWVTIVWNDPVNLMSYVTYVFQKLFGFSREKAKALM 61
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L VH +G E E + +R H Y L + Q
Sbjct: 62 LDVHRKGRATVSSGTREEME------RDATRLHAYGLWATIAQD 99
>gi|296139013|ref|YP_003646256.1| ATP-dependent Clp protease adaptor protein ClpS [Tsukamurella
paurometabola DSM 20162]
gi|296027147|gb|ADG77917.1| ATP-dependent Clp protease adaptor protein ClpS [Tsukamurella
paurometabola DSM 20162]
Length = 109
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 8/114 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSE--VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
M DS G S + + + K + ++ +D M +V V + F
Sbjct: 1 MTDSSAAAPGSPGVSGQPGSAATLERETDRAIDKPWVTVVWDDPVNLMSYVTFVFRKVFG 60
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
AK +M++VH +G + E V ++ L M++
Sbjct: 61 YSTSKAKELMMQVHTEGKAVVSTGDRDKVEGDVRKLHAA------GLWATMQRD 108
>gi|300741328|ref|ZP_07071349.1| ATP-dependent Clp protease adaptor protein ClpS [Rothia
dentocariosa M567]
gi|300380513|gb|EFJ77075.1| ATP-dependent Clp protease adaptor protein ClpS [Rothia
dentocariosa M567]
Length = 115
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ + + + ++V++ ND M +V +V + F A+ +ML+VH+ G
Sbjct: 23 DATELDATVDENLETQTPWQVIVWNDPVNLMTYVSYVFRAHFGFSRRRAEKLMLQVHNNG 82
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ E AE K Q M H + L E+
Sbjct: 83 KAVVFTGSREDAE-KHTQAM-----HAWGLMASFEK 112
>gi|302865655|ref|YP_003834292.1| ATP-dependent Clp protease adaptor protein ClpS [Micromonospora
aurantiaca ATCC 27029]
gi|315502219|ref|YP_004081106.1| ATP-dependent clp protease adaptor protein clps [Micromonospora sp.
L5]
gi|302568514|gb|ADL44716.1| ATP-dependent Clp protease adaptor protein ClpS [Micromonospora
aurantiaca ATCC 27029]
gi|315408838|gb|ADU06955.1| ATP-dependent Clp protease adaptor protein ClpS [Micromonospora sp.
L5]
Length = 99
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
+ + P + ++ +D M +V V Q F E A+ +ML V
Sbjct: 7 PQVAPVETPDTEEVPVSDRP--WVTIVWDDPVNLMTYVTWVFQKLFGYSREKAERLMLDV 64
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
HH+G A E E + ++ H Y L +++
Sbjct: 65 HHKGKAVVSSGARERME------HDAAQLHAYGLWATVDR 98
>gi|189218668|ref|YP_001939309.1| ATP-dependent Clp protease adaptor protein clpS [Methylacidiphilum
infernorum V4]
gi|189185526|gb|ACD82711.1| ATP-dependent Clp protease adaptor protein clpS [Methylacidiphilum
infernorum V4]
Length = 108
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRV--PKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
M + R + E KV+ +L+ V++ ND M +V++V Q
Sbjct: 1 MTEGRWLMAVAQLTSPEVVKEESVEDKVKEAFDQLWGVIVWNDPINLMSYVVYVFQRVLK 60
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ A ML+VH++G E AE+ V+Q+ + LQ ME+
Sbjct: 61 MSKQDATRHMLEVHNKGKSMVAKETKEKAELLVHQLQ------GFGLQATMEK 107
>gi|75907498|ref|YP_321794.1| ATP-dependent Clp protease adaptor protein ClpS [Anabaena
variabilis ATCC 29413]
gi|75701223|gb|ABA20899.1| ATP-dependent Clp protease adaptor protein ClpS [Anabaena
variabilis ATCC 29413]
Length = 93
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIG 103
++ + S+ ++ YRVLL ND+Y ME+V+ VL A IM++ H G+
Sbjct: 4 ETIEKRSTSRKLAPRYRVLLHNDDYNSMEYVVQVLITTVPSLTQPQAVSIMMEAHTNGLA 63
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + + + L +E
Sbjct: 64 LVITCAQEHAEFYCETLKD------HGLSSTIEPD 92
>gi|320103498|ref|YP_004179089.1| ATP-dependent Clp protease adaptor protein ClpS [Isosphaera pallida
ATCC 43644]
gi|319750780|gb|ADV62540.1| ATP-dependent Clp protease adaptor protein ClpS [Isosphaera pallida
ATCC 43644]
Length = 124
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 27 MADSRMNKKGI----AEFDNCLDSEVRFS--SKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
M+DS + + +K R Y V+++ND E+VI +L
Sbjct: 1 MSDSNDYEPDDLGAGTTVTTQSAPKTSTRGLTKTRQLPRYHVIILNDEEHTFEYVIDLLT 60
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYS 124
F TA+ + ++H +G+ E+AE+K +QV+++
Sbjct: 61 KVFRHSRPTAEALTWQIHTRGMAIVYTTHKELAELKRDQVLSWG 104
>gi|297160086|gb|ADI09798.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
bingchenggensis BCW-1]
Length = 95
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ ++ ND M +V +V Q +F + A +ML VHH+G + E
Sbjct: 16 PEPDVPWVTVVHNDPVNLMSYVTYVFQAYFGYSKDKAHRLMLDVHHKGRAVVSSGSREEM 75
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
E V + H Y L ++Q
Sbjct: 76 ERDVQAM------HGYGLWATLQQD 94
>gi|111220948|ref|YP_711742.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia alni
ACN14a]
gi|111148480|emb|CAJ60151.1| ATP-dependent Clp protease adaptor protein clpS [Frankia alni
ACN14a]
Length = 91
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+ + + ++ ND M +V +V Q F A +ML VHH+G
Sbjct: 7 EEADETLDDDRPWVTIVWNDPINLMSYVTYVFQKLFGYTKSKATELMLDVHHKGRASVAT 66
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E R H Y L + Q
Sbjct: 67 GTREEMEADAE------RLHAYGLWATIAQD 91
>gi|284052626|ref|ZP_06382836.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira
platensis str. Paraca]
Length = 93
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGI 102
+ + S+ ++ YRVLL ND++ PME+V+ VL A IM++ H G+
Sbjct: 3 TQTVEKTSTNRKLAPRYRVLLHNDDHNPMEYVVQVLMSTVPGLTQPQAVSIMMEAHTNGL 62
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + N + L +E
Sbjct: 63 ALVITCALEHAEFYCETLKN------HGLTSTIEPD 92
>gi|145222937|ref|YP_001133615.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
gilvum PYR-GCK]
gi|315443400|ref|YP_004076279.1| hypothetical protein Mspyr1_17820 [Mycobacterium sp. Spyr1]
gi|145215423|gb|ABP44827.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
gilvum PYR-GCK]
gi|315261703|gb|ADT98444.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length = 100
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
D ++ + ++ +D M +V +VLQ F A +ML+V
Sbjct: 9 PGTREDRDVGEDAAADT----PWVTIVWDDPVNLMTYVTYVLQKLFGYTEPHATKLMLQV 64
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H++G + E E V SR H L ++Q
Sbjct: 65 HNEGKAVVSAGSRESMETDV------SRLHAAGLWATLQQD 99
>gi|320010544|gb|ADW05394.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
flavogriseus ATCC 33331]
Length = 105
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+S + L+ ND M +V +V Q +F + A +ML VH +G
Sbjct: 16 ESAEETFVVPEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYSKDKAHKLMLDVHQKGRAV 75
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L + Q
Sbjct: 76 VSSGSREEMERDVQAM------HGYGLWATLTQD 103
>gi|254385759|ref|ZP_05001080.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces sp.
Mg1]
gi|194344625|gb|EDX25591.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces sp.
Mg1]
Length = 104
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+S + + L+ ND M +V +V Q +F + A +ML VHH+G
Sbjct: 14 TESAEETYAVPEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYSKDKAHKLMLDVHHKGRA 73
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L + Q
Sbjct: 74 VVSSGTREEMERDVQAM------HGYGLWATLSQD 102
>gi|282897015|ref|ZP_06305017.1| ATP-dependent Clp protease adaptor protein ClpS [Raphidiopsis
brookii D9]
gi|281197667|gb|EFA72561.1| ATP-dependent Clp protease adaptor protein ClpS [Raphidiopsis
brookii D9]
Length = 93
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIG 103
++ + S+ ++ YRVLL ND+Y ME+V+ VL A IM++ H G+
Sbjct: 4 ETIEKPSTTRKLAPRYRVLLHNDDYNSMEYVVQVLLSTIPSLTQPQAVTIMMEAHSNGLA 63
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + + + L +E
Sbjct: 64 LVISCALEHAEFYCESL------NNHGLTSTIEPD 92
>gi|302534695|ref|ZP_07287037.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces sp.
C]
gi|302443590|gb|EFL15406.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces sp.
C]
Length = 104
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+S + + L+ ND M +V +V Q +F + A +M+ VH++G
Sbjct: 14 TESAEETFAVPEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYPKDKATRLMMDVHNKGKA 73
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L + Q
Sbjct: 74 VVSSGTREEMERDVQAM------HGYGLWATLSQD 102
>gi|158317405|ref|YP_001509913.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp.
EAN1pec]
gi|158112810|gb|ABW15007.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp.
EAN1pec]
Length = 122
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+L+ ++ ND M +V +V + F A +ML VHH+G
Sbjct: 38 EDVEDSPEDDRLWVTIVWNDPINLMSYVTYVFRKLFGYSERKATKLMLDVHHKGRATVAS 97
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E R H Y L + Q
Sbjct: 98 GTREEMEAAAE------RLHTYGLWATIAQD 122
>gi|159036636|ref|YP_001535889.1| ATP-dependent Clp protease adaptor protein ClpS [Salinispora
arenicola CNS-205]
gi|157915471|gb|ABV96898.1| ATP-dependent Clp protease adaptor protein ClpS [Salinispora
arenicola CNS-205]
Length = 96
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ + ++ +D M +V V Q F E A+ +ML VHH+G
Sbjct: 13 DTDEVPAPDRPWVTIVWDDPVNLMTYVTWVFQKLFGYSRERAEQLMLDVHHKGRAVVTSG 72
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ E E +Q+ H Y L +++
Sbjct: 73 SRERMEHDASQL------HAYGLWATVDR 95
>gi|134097791|ref|YP_001103452.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharopolyspora
erythraea NRRL 2338]
gi|291005573|ref|ZP_06563546.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharopolyspora
erythraea NRRL 2338]
gi|133910414|emb|CAM00527.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharopolyspora
erythraea NRRL 2338]
Length = 97
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
K + ++ ND M +V +VLQ F + A +ML VHH+G + E E
Sbjct: 20 EDKPWVTVVWNDPVNLMSYVTYVLQKIFGYSKDHATKLMLDVHHKGRAAVSSGSKEKVEG 79
Query: 116 KVNQVMNYSRQHQYPLQCIMEQK 138
V ++ H L M++
Sbjct: 80 DV------AKLHAAGLWATMQKD 96
>gi|326441362|ref|ZP_08216096.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
clavuligerus ATCC 27064]
Length = 82
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ L+ ND M +V +V Q +F + A+ +ML VH++G + E
Sbjct: 2 PEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYSKDKARKLMLDVHNKGRAVVSSGSREEM 61
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
E V + H Y L + Q
Sbjct: 62 ERDVQAM------HGYGLWATLSQD 80
>gi|291299382|ref|YP_003510660.1| ATP-dependent Clp protease adaptor protein ClpS [Stackebrandtia
nassauensis DSM 44728]
gi|290568602|gb|ADD41567.1| ATP-dependent Clp protease adaptor protein ClpS [Stackebrandtia
nassauensis DSM 44728]
Length = 119
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
++ + + ++ ND M +V +V Q++F A+ +ML VH++G+
Sbjct: 31 ETVTDAAETPEADAPWVTIVRNDPVNLMSYVSYVFQSYFGYTRPKAEELMLDVHNKGLAV 90
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L M Q
Sbjct: 91 VSSGNREEMERDVQAM------HGYGLWASMRQD 118
>gi|296393925|ref|YP_003658809.1| ATP-dependent Clp protease adaptor protein ClpS [Segniliparus
rotundus DSM 44985]
gi|296181072|gb|ADG97978.1| ATP-dependent Clp protease adaptor protein ClpS [Segniliparus
rotundus DSM 44985]
Length = 104
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ ++ +D M +V +V Q F A +ML+VH+ G + E E
Sbjct: 26 EPDLPWVTIVWDDPVNLMRYVTYVFQTVFGYSEAKATELMLQVHNDGKAVVSSGSREKVE 85
Query: 115 MKVNQVMNYSRQHQYPLQCIMEQ 137
V + HQ L M+Q
Sbjct: 86 TDVV------KLHQAGLWATMQQ 102
>gi|172041152|ref|YP_001800866.1| hypothetical protein cur_1472 [Corynebacterium urealyticum DSM
7109]
gi|171852456|emb|CAQ05432.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
7109]
Length = 138
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 13/137 (9%)
Query: 8 SMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDS-------EVRFSSKVRVPKLY 60
Y A M GI + E R + +
Sbjct: 5 GEYSHSSERCGQAKKYSTAMPSPPRRGDGILGGMTSPAAPSATPVAEKRPETLTDADLPW 64
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
+ + +D M +V +V + + A +M++VH +G + E V ++
Sbjct: 65 QCICWDDPVNLMSYVTYVFETVLGYSRKKATELMMRVHTEGKAVVSSGERDKVEGDVKKL 124
Query: 121 MNYSRQHQYPLQCIMEQ 137
L MEQ
Sbjct: 125 HTA------GLWATMEQ 135
>gi|145593650|ref|YP_001157947.1| ATP-dependent Clp protease adaptor protein ClpS [Salinispora
tropica CNB-440]
gi|145302987|gb|ABP53569.1| ATP-dependent Clp protease adaptor protein ClpS [Salinispora
tropica CNB-440]
Length = 96
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
+ + P + ++ +D M +V V Q F A+ +ML V
Sbjct: 4 PQVAPAETPDTDEVPAPDRP--WVTIVWDDPVNLMAYVTWVFQKLFGYSRGRAEQLMLDV 61
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
HH+G E E +Q+ H Y L +++
Sbjct: 62 HHKGKAVVSSGTRERMEHDASQL------HAYGLWATVDR 95
>gi|312199648|ref|YP_004019709.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp. EuI1c]
gi|311230984|gb|ADP83839.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp. EuI1c]
Length = 96
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+ + + ++ ND M +V +V Q F D TA+ +ML VH +G
Sbjct: 12 EEIEEALSDDRPWVTIVWNDPINLMSYVTYVFQKLFGYDRPTARKLMLDVHEKGRASVSN 71
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E + +R H Y L + Q
Sbjct: 72 GTRDEME------RDAARLHTYGLWATVRQD 96
>gi|163840214|ref|YP_001624619.1| ATP-dependent Clp protease adaptor protein [Renibacterium
salmoninarum ATCC 33209]
gi|162953690|gb|ABY23205.1| ATP-dependent Clp protease adaptor protein [Renibacterium
salmoninarum ATCC 33209]
Length = 104
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ +AE E + + V++ +D M++V +V Q++F E A+
Sbjct: 1 MSISTLAEPVEQSAVENSPAQDASGEHPWSVVVWDDPINTMDYVSYVFQSYFGYGKERAE 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ML+VH+ G A E AE + H + LQ + +
Sbjct: 61 ALMLQVHNGGKAVVSRGAREKAET------DMMAMHSFGLQATVRK 100
>gi|113477268|ref|YP_723329.1| ATP-dependent Clp protease adaptor [Trichodesmium erythraeum
IMS101]
gi|110168316|gb|ABG52856.1| ATP-dependent Clp protease adaptor protein ClpS [Trichodesmium
erythraeum IMS101]
Length = 116
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y+V+++ND+ + V LQ + A + +VH++G V E A
Sbjct: 37 KPYPNYKVIVLNDDVNTFKHVAECLQKYIPGMTSDRAWELTYQVHNEGQAIVWVGPLEQA 96
Query: 114 EMKVNQV 120
E+ Q+
Sbjct: 97 ELYHQQL 103
>gi|307329937|ref|ZP_07609090.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
violaceusniger Tu 4113]
gi|306884428|gb|EFN15461.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
violaceusniger Tu 4113]
Length = 103
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 51 SSKVRVPKL--------YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ R + + ++ ND M +V +V Q++F + A +ML VHH+G
Sbjct: 13 RPETREAPMSVPEPDVPWVTVVHNDPVNLMSYVTYVFQSYFGYPKDKAHRLMLDVHHKGR 72
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L ++Q+
Sbjct: 73 AIVSSGSREEMERDVQAM------HGYGLWATLQQE 102
>gi|183984038|ref|YP_001852329.1| hypothetical protein MMAR_4067 [Mycobacterium marinum M]
gi|238690951|sp|B2HQI2|CLPS_MYCMM RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|183177364|gb|ACC42474.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 101
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
+ +S+ + ++ +D M +V +V Q F A +ML+VH++G
Sbjct: 15 QQESASRDATASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHATKLMLQVHNEGRAVVS 74
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E+ V S+ H L M+Q
Sbjct: 75 AGSREAMEVDV------SKLHAAGLWATMQQD 100
>gi|300868553|ref|ZP_07113170.1| ATP-dependent Clp protease adaptor protein ClpS [Oscillatoria sp.
PCC 6506]
gi|300333431|emb|CBN58362.1| ATP-dependent Clp protease adaptor protein ClpS [Oscillatoria sp.
PCC 6506]
Length = 93
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIG 103
++ + S+ ++ YRVLL ND++ ME+V+ L + A IM++ H G+
Sbjct: 4 ETIEKRSTVRKIAPRYRVLLHNDDFNSMEYVVQTLMHTVPSLTQPQAVNIMMEAHTNGLA 63
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A E AE + + + L +E
Sbjct: 64 VVIICAQEHAEFYSETL------NNHGLISTIEPD 92
>gi|284989906|ref|YP_003408460.1| ATP-dependent Clp protease adaptor protein ClpS [Geodermatophilus
obscurus DSM 43160]
gi|284063151|gb|ADB74089.1| ATP-dependent Clp protease adaptor protein ClpS [Geodermatophilus
obscurus DSM 43160]
Length = 98
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
+ + ++ ND M +V +VLQ F D TA +ML+VH +G E E
Sbjct: 22 DRPWVTIVWNDPVNLMTYVTYVLQELFGYDEPTATTLMLQVHEEGKAIVSSGPRERME-- 79
Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
+ SR H Y L ++
Sbjct: 80 ----HDTSRLHAYGLWASYQRD 97
>gi|317508765|ref|ZP_07966415.1| ATP-dependent Clp protease adaptor protein ClpS [Segniliparus
rugosus ATCC BAA-974]
gi|316252928|gb|EFV12348.1| ATP-dependent Clp protease adaptor protein ClpS [Segniliparus
rugosus ATCC BAA-974]
Length = 112
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E S + ++ +D M +V +V Q F A +ML+VH+ G
Sbjct: 26 EQAADSSAEPDLPWMTIVWDDPVNLMRYVTYVFQTVFGYSEAKATELMLRVHNDGKAVVS 85
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ E E V ++ L M+Q
Sbjct: 86 SGSREKVETDVVKLQQA------GLWATMQQ 110
>gi|255627599|gb|ACU14144.1| unknown [Glycine max]
Length = 160
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAK 91
+ I +SE + YRVLL NDN+ E+V+ VL + A
Sbjct: 55 ERPTIETTSPGRESEFDLRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTIDNAV 114
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IM + H+ G+ V A AE Q+ L +E
Sbjct: 115 NIMQEAHYNGLAVVIVCAQVDAEDHCMQLR------GNGLLSSIEP 154
>gi|84494380|ref|ZP_00993499.1| hypothetical protein JNB_06279 [Janibacter sp. HTCC2649]
gi|84383873|gb|EAP99753.1| hypothetical protein JNB_06279 [Janibacter sp. HTCC2649]
Length = 96
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ S+ V + L+ ND M +V +V Q++F D A+ +M+ VH +G
Sbjct: 5 PVQEEITSSSTDVAPDLPWITLVWNDPVNLMSYVTYVFQSYFGYDRAKAEKLMMDVHVKG 64
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E+ + Y L ++
Sbjct: 65 RAVVSHGPREKMEIDTEALQ------GYGLWATFQKD 95
>gi|239941589|ref|ZP_04693526.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
roseosporus NRRL 15998]
gi|239988054|ref|ZP_04708718.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
roseosporus NRRL 11379]
gi|291445032|ref|ZP_06584422.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
roseosporus NRRL 15998]
gi|291347979|gb|EFE74883.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
roseosporus NRRL 15998]
Length = 105
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
DS + + L+ ND M +V +V Q +F + A +ML VH +G
Sbjct: 16 DSAEEAFAVPEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYPKDKAHKLMLDVHQKGRAV 75
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L + Q
Sbjct: 76 VSSGSREEMERDVQAM------HGYGLWATLTQD 103
>gi|284029798|ref|YP_003379729.1| ATP-dependent Clp protease adaptor protein ClpS [Kribbella flavida
DSM 17836]
gi|283809091|gb|ADB30930.1| ATP-dependent Clp protease adaptor protein ClpS [Kribbella flavida
DSM 17836]
Length = 95
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ + + ++ ND M++V V Q +F + A+ +M++VH +G
Sbjct: 12 EVDEAIELSPPWVTIVWNDPVNLMDYVTFVFQTYFGYSKQKAEKLMMQVHEEGKSAVSSG 71
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E E V + H Y L E+
Sbjct: 72 NREAMERDVEAM------HSYGLWATCEK 94
>gi|282899028|ref|ZP_06307010.1| ATP-dependent Clp protease adaptor protein ClpS [Cylindrospermopsis
raciborskii CS-505]
gi|281196168|gb|EFA71083.1| ATP-dependent Clp protease adaptor protein ClpS [Cylindrospermopsis
raciborskii CS-505]
Length = 93
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIG 103
++ + S+ ++ YRVLL ND+Y ME+V+ VL A IM++ H G+
Sbjct: 4 ETIEKPSTTRKLAPRYRVLLHNDDYNSMEYVVQVLLSTIPSLTQPQAVSIMMEAHSHGLA 63
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + + Y L +E
Sbjct: 64 LVISCALEHAEFYCESL------NNYGLTSTIEPD 92
>gi|81299501|ref|YP_399709.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus
elongatus PCC 7942]
gi|123728228|sp|Q31QE7|CLPS_SYNE7 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|81168382|gb|ABB56722.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 95
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGEC 105
+ ++K ++ YRVLL ND++ PME+V+ VL A IM++ H G G
Sbjct: 8 KPETTTKRKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLV 67
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E AE Q+ + + L +E
Sbjct: 68 ITCDIEPAEFYCEQLKS------HGLSSSIEPD 94
>gi|296170273|ref|ZP_06851864.1| ATP-dependent Clp protease adapter protein ClpS [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894996|gb|EFG74715.1| ATP-dependent Clp protease adapter protein ClpS [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 101
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ + + ++ +D M +V +V Q F A +ML+VH++G
Sbjct: 10 PGTTGQRESAPVDATASPWVTIVWDDPVNLMTYVTYVFQKLFGYSEPHATKLMLQVHNEG 69
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E+ V S+ H L M+Q
Sbjct: 70 RAVVSAGSRESMEVDV------SKLHAAGLWATMQQD 100
>gi|169628566|ref|YP_001702215.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
abscessus ATCC 19977]
gi|169240533|emb|CAM61561.1| Probable ATP-dependent Clp protease adaptor protein ClpS
[Mycobacterium abscessus]
Length = 100
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+E + ++ +D M +V +V Q F A +ML+VHH+G
Sbjct: 9 PGTTAERSVEHVDETQSPWVTIVWDDPVNLMNYVAYVFQQLFGYSETEATNLMLQVHHEG 68
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E E ++ S+ H L ++Q
Sbjct: 69 KAVVSCGARESME------IDVSKLHAAGLWATLQQD 99
>gi|240169486|ref|ZP_04748145.1| hypothetical protein MkanA1_09246 [Mycobacterium kansasii ATCC
12478]
Length = 101
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
+ ++ +D M +V +V Q F A +ML+VH++G + E E+ V
Sbjct: 26 SPWVTVVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSREAMEVDV 85
Query: 118 NQVMNYSRQHQYPLQCIMEQK 138
S+ H L M+Q
Sbjct: 86 ------SKLHAAGLWATMQQD 100
>gi|254389805|ref|ZP_05005029.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces
clavuligerus ATCC 27064]
gi|197703516|gb|EDY49328.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces
clavuligerus ATCC 27064]
Length = 104
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ L+ ND M +V +V Q +F + A+ +ML VH++G + E
Sbjct: 24 PEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYSKDKARKLMLDVHNKGRAVVSSGSREEM 83
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
E V + H Y L + Q
Sbjct: 84 ERDVQAM------HGYGLWATLSQD 102
>gi|326779067|ref|ZP_08238332.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces cf.
griseus XylebKG-1]
gi|326659400|gb|EGE44246.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces cf.
griseus XylebKG-1]
Length = 105
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
DS + + L+ ND M +V +V Q +F + A +M+ VH +G
Sbjct: 16 DSAEEAFAVPEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYPKDKAHRLMMDVHQKGRAV 75
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L + Q
Sbjct: 76 VSSGSREEMERDVQAM------HGYGLWATLTQD 103
>gi|223936983|ref|ZP_03628891.1| ATP-dependent Clp protease adaptor protein ClpS [bacterium
Ellin514]
gi|223894264|gb|EEF60717.1| ATP-dependent Clp protease adaptor protein ClpS [bacterium
Ellin514]
Length = 101
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M + E ++ E + +SK + Y V+ ND M++V HV Q F + + A+
Sbjct: 1 MAETATPEIMPDVEQEEQAASKSELEPGYLVVCWNDPVNLMDYVSHVFQKVFGWNRQKAE 60
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
ML+VH+QG + E AE V+Q+ YS L ME+
Sbjct: 61 QHMLEVHNQGKSVLVRESMEKAEHFVHQLQKYS------LHATMERD 101
>gi|87310728|ref|ZP_01092855.1| hypothetical protein DSM3645_06866 [Blastopirellula marina DSM
3645]
gi|87286485|gb|EAQ78392.1| hypothetical protein DSM3645_06866 [Blastopirellula marina DSM
3645]
Length = 117
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 40/98 (40%)
Query: 30 SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
+ + + S+ + +K + Y V+L ND+ ++VI ++++ F E
Sbjct: 3 NNESAVAEPWEATTVKSKPKNDTKRKKQPRYNVILWNDDDHTYDYVILMMRDLFGHPVEA 62
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
I V G C E AE+K +Q+ Y +
Sbjct: 63 GFKIAETVDAAGRAICLTTTREHAELKRDQIHAYGKDE 100
>gi|269128072|ref|YP_003301442.1| ATP-dependent Clp protease adaptor protein ClpS [Thermomonospora
curvata DSM 43183]
gi|268313030|gb|ACY99404.1| ATP-dependent Clp protease adaptor protein ClpS [Thermomonospora
curvata DSM 43183]
Length = 97
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ R R + ++ ND M +V +V Q F A+ +ML
Sbjct: 1 MTAPAPVELDRPRSDEDHRPDLPWLTIVWNDPINLMSYVTYVFQTVFGYPKPKAEKLMLD 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VHH+G E E V + H Y L +++
Sbjct: 61 VHHKGRAVVASGGREEMERYVEIL------HSYGLWATVKRD 96
>gi|297194131|ref|ZP_06911529.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces
pristinaespiralis ATCC 25486]
gi|197721956|gb|EDY65864.1| ATP-dependent Clp protease adapter protein clpS [Streptomyces
pristinaespiralis ATCC 25486]
Length = 100
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+S + + L+ ND M +V +V Q +F + A +ML VHH+G
Sbjct: 11 ESAEEAHAVPEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYSKDKAHKLMLDVHHKGRAV 70
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L + Q
Sbjct: 71 VSSGTREEMERDVQAM------HGYGLWATLTQD 98
>gi|158338702|ref|YP_001519879.1| ATP-dependent Clp protease adaptor protein ClpS [Acaryochloris
marina MBIC11017]
gi|158308943|gb|ABW30560.1| ATP-dependent Clp protease adaptor protein ClpS [Acaryochloris
marina MBIC11017]
Length = 93
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIG 103
++ + S+ ++ YRVLL ND++ ME V+ VL Q A +M++ H GI
Sbjct: 4 ETLEKRSTSRKLAPKYRVLLHNDDFNSMEHVVQVLIQTVPNLTQPQAVSVMMEAHTNGIA 63
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A+E AE + + L +E
Sbjct: 64 LVITCAFEHAEFYCETLKM------HGLTSTIEPD 92
>gi|15608471|ref|NP_215847.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis H37Rv]
gi|15840786|ref|NP_335823.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis CDC1551]
gi|31792527|ref|NP_855020.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
bovis AF2122/97]
gi|121637262|ref|YP_977485.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|148661120|ref|YP_001282643.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis H37Ra]
gi|148822554|ref|YP_001287308.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis F11]
gi|167969078|ref|ZP_02551355.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis H37Ra]
gi|215403178|ref|ZP_03415359.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis 02_1987]
gi|215410976|ref|ZP_03419784.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis 94_M4241A]
gi|215426660|ref|ZP_03424579.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis T92]
gi|215430217|ref|ZP_03428136.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis EAS054]
gi|215445513|ref|ZP_03432265.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis T85]
gi|218753042|ref|ZP_03531838.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis GM 1503]
gi|224989736|ref|YP_002644423.1| ATP-dependent Clp protease adaptor protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253799621|ref|YP_003032622.1| hypothetical protein TBMG_02647 [Mycobacterium tuberculosis KZN
1435]
gi|254231583|ref|ZP_04924910.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254364228|ref|ZP_04980274.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254550343|ref|ZP_05140790.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260186272|ref|ZP_05763746.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis CPHL_A]
gi|260200388|ref|ZP_05767879.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis T46]
gi|260204592|ref|ZP_05772083.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis K85]
gi|289442773|ref|ZP_06432517.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289446929|ref|ZP_06436673.1| ATP-dependent Clp protease adaptor protein clpS [Mycobacterium
tuberculosis CPHL_A]
gi|289554877|ref|ZP_06444087.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289573997|ref|ZP_06454224.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis K85]
gi|289745083|ref|ZP_06504461.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis 02_1987]
gi|289749887|ref|ZP_06509265.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289753413|ref|ZP_06512791.1| ATP-dependent Clp protease adapter protein clpS [Mycobacterium
tuberculosis EAS054]
gi|289757436|ref|ZP_06516814.1| ATP-dependent Clp protease adapter protein clpS [Mycobacterium
tuberculosis T85]
gi|289761492|ref|ZP_06520870.1| ATP-dependent Clp protease adaptor protein clpS [Mycobacterium
tuberculosis GM 1503]
gi|294994889|ref|ZP_06800580.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis 210]
gi|297633884|ref|ZP_06951664.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis KZN 4207]
gi|297730872|ref|ZP_06959990.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis KZN R506]
gi|298524838|ref|ZP_07012247.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis 94_M4241A]
gi|306775510|ref|ZP_07413847.1| hypothetical protein TMAG_03478 [Mycobacterium tuberculosis
SUMu001]
gi|306780660|ref|ZP_07418997.1| hypothetical protein TMBG_01162 [Mycobacterium tuberculosis
SUMu002]
gi|306784061|ref|ZP_07422383.1| hypothetical protein TMCG_00966 [Mycobacterium tuberculosis
SUMu003]
gi|306788422|ref|ZP_07426744.1| hypothetical protein TMDG_01214 [Mycobacterium tuberculosis
SUMu004]
gi|306792751|ref|ZP_07431053.1| hypothetical protein TMEG_01233 [Mycobacterium tuberculosis
SUMu005]
gi|306797155|ref|ZP_07435457.1| hypothetical protein TMFG_02526 [Mycobacterium tuberculosis
SUMu006]
gi|306803034|ref|ZP_07439702.1| hypothetical protein TMHG_00518 [Mycobacterium tuberculosis
SUMu008]
gi|306807228|ref|ZP_07443896.1| hypothetical protein TMGG_01898 [Mycobacterium tuberculosis
SUMu007]
gi|306967425|ref|ZP_07480086.1| hypothetical protein TMIG_03011 [Mycobacterium tuberculosis
SUMu009]
gi|306971618|ref|ZP_07484279.1| hypothetical protein TMJG_03719 [Mycobacterium tuberculosis
SUMu010]
gi|307079330|ref|ZP_07488500.1| hypothetical protein TMKG_01834 [Mycobacterium tuberculosis
SUMu011]
gi|307083895|ref|ZP_07493008.1| hypothetical protein TMLG_03423 [Mycobacterium tuberculosis
SUMu012]
gi|313658205|ref|ZP_07815085.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis KZN V2475]
gi|54036860|sp|P67648|CLPS_MYCBO RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|54041057|sp|P67647|CLPS_MYCTU RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|158512947|sp|A1KIC1|CLPS_MYCBP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|158513366|sp|A5U231|CLPS_MYCTA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|254763820|sp|C1AMX6|CLPS_MYCBT RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|1340097|emb|CAA98095.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|13880981|gb|AAK45637.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|31618116|emb|CAD94227.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121492909|emb|CAL71380.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124600642|gb|EAY59652.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134149742|gb|EBA41787.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148505272|gb|ABQ73081.1| ATP-dependent Clp protease adaptor protein [Mycobacterium
tuberculosis H37Ra]
gi|148721081|gb|ABR05706.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224772849|dbj|BAH25655.1| ATP-dependent Clp protease adaptor protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253321124|gb|ACT25727.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289415692|gb|EFD12932.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289419887|gb|EFD17088.1| ATP-dependent Clp protease adaptor protein clpS [Mycobacterium
tuberculosis CPHL_A]
gi|289439509|gb|EFD22002.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289538428|gb|EFD43006.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis K85]
gi|289685611|gb|EFD53099.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis 02_1987]
gi|289690474|gb|EFD57903.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289694000|gb|EFD61429.1| ATP-dependent Clp protease adapter protein clpS [Mycobacterium
tuberculosis EAS054]
gi|289708998|gb|EFD73014.1| ATP-dependent Clp protease adaptor protein clpS [Mycobacterium
tuberculosis GM 1503]
gi|289713000|gb|EFD77012.1| ATP-dependent Clp protease adapter protein clpS [Mycobacterium
tuberculosis T85]
gi|298494632|gb|EFI29926.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
tuberculosis 94_M4241A]
gi|308215982|gb|EFO75381.1| hypothetical protein TMAG_03478 [Mycobacterium tuberculosis
SUMu001]
gi|308326489|gb|EFP15340.1| hypothetical protein TMBG_01162 [Mycobacterium tuberculosis
SUMu002]
gi|308331130|gb|EFP19981.1| hypothetical protein TMCG_00966 [Mycobacterium tuberculosis
SUMu003]
gi|308334971|gb|EFP23822.1| hypothetical protein TMDG_01214 [Mycobacterium tuberculosis
SUMu004]
gi|308338777|gb|EFP27628.1| hypothetical protein TMEG_01233 [Mycobacterium tuberculosis
SUMu005]
gi|308342418|gb|EFP31269.1| hypothetical protein TMFG_02526 [Mycobacterium tuberculosis
SUMu006]
gi|308346329|gb|EFP35180.1| hypothetical protein TMGG_01898 [Mycobacterium tuberculosis
SUMu007]
gi|308350252|gb|EFP39103.1| hypothetical protein TMHG_00518 [Mycobacterium tuberculosis
SUMu008]
gi|308354901|gb|EFP43752.1| hypothetical protein TMIG_03011 [Mycobacterium tuberculosis
SUMu009]
gi|308358845|gb|EFP47696.1| hypothetical protein TMJG_03719 [Mycobacterium tuberculosis
SUMu010]
gi|308362782|gb|EFP51633.1| hypothetical protein TMKG_01834 [Mycobacterium tuberculosis
SUMu011]
gi|308366429|gb|EFP55280.1| hypothetical protein TMLG_03423 [Mycobacterium tuberculosis
SUMu012]
gi|323720148|gb|EGB29251.1| hypothetical protein TMMG_02032 [Mycobacterium tuberculosis
CDC1551A]
gi|326902954|gb|EGE49887.1| hypothetical protein TBPG_00811 [Mycobacterium tuberculosis W-148]
gi|328459367|gb|AEB04790.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 101
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
+ + ++ +D M +V +V Q F A +ML+VH++G + E E+
Sbjct: 24 TDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEV 83
Query: 116 KVNQVMNYSRQHQYPLQCIMEQK 138
V S+ H L M+Q
Sbjct: 84 DV------SKLHAAGLWATMQQD 100
>gi|282901708|ref|ZP_06309624.1| ATP-dependent Clp protease adaptor protein ClpS [Cylindrospermopsis
raciborskii CS-505]
gi|281193471|gb|EFA68452.1| ATP-dependent Clp protease adaptor protein ClpS [Cylindrospermopsis
raciborskii CS-505]
Length = 107
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y+V+++ND++ E V L E A + +VH++G V E A
Sbjct: 28 KPYPNYKVIVLNDDFNTFEHVAKSLMKYIPGMTTEQAWELTNQVHYEGQAIVWVGPQEQA 87
Query: 114 EMKVNQVMNYS 124
E+ Q+
Sbjct: 88 ELYHQQLRRAG 98
>gi|17231817|ref|NP_488365.1| ATP-dependent Clp protease adaptor protein ClpS [Nostoc sp. PCC
7120]
gi|17133461|dbj|BAB76024.1| asl4325 [Nostoc sp. PCC 7120]
Length = 93
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIG 103
++ + S+ ++ YRVLL ND++ ME+V+ VL A IM++ H G+
Sbjct: 4 ETIEKRSTSRKLAPRYRVLLHNDDHNSMEYVVQVLITTVPSLTQPQAVSIMMEAHTNGLA 63
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + + + L +E
Sbjct: 64 LVITCAQEHAEFYCETLKD------HGLSSTIEPD 92
>gi|182438416|ref|YP_001826135.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178466932|dbj|BAG21452.1| putative ATP-dependent Clp protease adaptor protein ClpS
[Streptomyces griseus subsp. griseus NBRC 13350]
Length = 105
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
D+ + + L+ ND M +V +V Q +F + A +M+ VH +G
Sbjct: 16 DAAEEAFAVPEPDVPWVTLVHNDPVNLMSYVTYVFQAYFGYPKDKAHRLMMDVHQKGRAV 75
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L + Q
Sbjct: 76 VSSGSREEMERDVQAM------HGYGLWATLTQD 103
>gi|323359749|ref|YP_004226145.1| hypothetical protein MTES_3301 [Microbacterium testaceum StLB037]
gi|323276120|dbj|BAJ76265.1| uncharacterized conserved protein [Microbacterium testaceum
StLB037]
Length = 102
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
P ++ ++ ND M +V HV + +F D TA+ +ML VHH G E+ E
Sbjct: 24 PPSSWQTVVWNDPVNLMSYVSHVFRTYFGFDSATAERLMLAVHHDGHAVVARGPREVMEA 83
Query: 116 KVNQVMNYSRQHQYPLQCIMEQK 138
+ + + Y L + ++
Sbjct: 84 HTHAMHD------YGLWATVRKE 100
>gi|326773727|ref|ZP_08233010.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces
viscosus C505]
gi|326636957|gb|EGE37860.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces
viscosus C505]
Length = 105
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ E+ S+VR +L+ ++ +D M +V V ++F A+ M++VH G
Sbjct: 2 PVAEPEILEESRVRAQRLWCTVVHDDPVNTMSYVTWVFHSYFGFSLPVAEARMMQVHTTG 61
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A E E+ V + H Y L+ +E
Sbjct: 62 RAVVSQGARERMEVDVTAM------HGYGLRATIEP 91
>gi|283780183|ref|YP_003370938.1| ATP-dependent Clp protease adaptor protein ClpS [Pirellula staleyi
DSM 6068]
gi|283438636|gb|ADB17078.1| ATP-dependent Clp protease adaptor protein ClpS [Pirellula staleyi
DSM 6068]
Length = 118
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
++++ K + Y V+L ND+ ++VI +++ F K I +V+ +G
Sbjct: 14 EVVEAKPVQKKKPKRQPRYHVILWNDDDHTFDYVIRMMKELFGHPEVKGKQIADEVNEKG 73
Query: 102 IGECGVYAYEIAEMKVNQVMNYS 124
C E AE+K +Q+ +
Sbjct: 74 KAICLTTTLEHAELKRDQIHAFG 96
>gi|147805878|emb|CAN78258.1| hypothetical protein VITISV_026645 [Vitis vinifera]
Length = 135
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAK 91
+ I +SE ++ YRVLL NDNY E+V+ VL + A
Sbjct: 31 ERPTIERIMPGRESEFDLRKSRKMSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAV 90
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
IM + HH G+ + A AE Q+ L +E
Sbjct: 91 NIMQEAHHNGMSVVIICAQVDAEXHCMQLR------GNGLLSSIEP 130
>gi|126657545|ref|ZP_01728701.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp.
CCY0110]
gi|172037153|ref|YP_001803654.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp.
ATCC 51142]
gi|126621249|gb|EAZ91962.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp.
CCY0110]
gi|171698607|gb|ACB51588.1| putative ATP-dependent Clp protease, adaptor protein [Cyanothece
sp. ATCC 51142]
Length = 97
Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 50 FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGECGVY 108
S+ + YRVLL ND++ ME+V+ L A IM++ H G
Sbjct: 13 TSTVRKPAPRYRVLLHNDDFNSMEYVVQTLMQTVSGMTQPQAVDIMMEAHTNGTALVITC 72
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + N + L +E
Sbjct: 73 ALEPAEFYCETLKN------HGLTSTIEPD 96
>gi|118472588|ref|YP_889165.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
smegmatis str. MC2 155]
gi|118173875|gb|ABK74771.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
smegmatis str. MC2 155]
Length = 100
Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M A + +V P + ++ +D M +V +V Q F A
Sbjct: 1 MVTPAKARPGTREEVDVASVESTEAP--WVTIVWDDPVNLMSYVTYVFQKLFGYSEPHAT 58
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML+VH++G + E E+ V S+ H L M+Q
Sbjct: 59 KLMLQVHNEGKAVVSAGSRESMEVDV------SKLHAAGLWATMQQD 99
>gi|54023053|ref|YP_117295.1| ATP-dependent Clp protease adaptor protein ClpS [Nocardia farcinica
IFM 10152]
gi|67460226|sp|Q5Z0W0|CLPS_NOCFA RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|54014561|dbj|BAD55931.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 106
Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
+ + ++ +D M +V ++ Q F A +ML+VH++G + + E
Sbjct: 29 EDRPWVTVVWDDPVNLMHYVTYIFQKLFGYSKAKATELMLQVHNEGKAVVSSGSRDKMEH 88
Query: 116 KVNQVMNYSRQHQYPLQCIMEQK 138
V R H L M++
Sbjct: 89 DVR------RLHAAGLWATMQRD 105
>gi|260434316|ref|ZP_05788286.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 8109]
gi|260412190|gb|EEX05486.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 8109]
Length = 123
Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 9/121 (7%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
L L F M + + LD K Y+VLL ND ME+V+
Sbjct: 10 LNLKVFGSMVMAVDSPSQKPGGAAVLDKAPERVRK--RSPRYKVLLHNDPVNSMEYVVAT 67
Query: 79 LQNFF-YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
LQ + +ML+ H+ G+G V E AE + + L +E
Sbjct: 68 LQQVVPQLSEQDCMAVMLEAHNTGVGLVIVCDIEPAEFYCEMLKSK------GLTSSIEP 121
Query: 138 K 138
+
Sbjct: 122 E 122
>gi|302545011|ref|ZP_07297353.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
hygroscopicus ATCC 53653]
gi|302462629|gb|EFL25722.1| ATP-dependent Clp protease adaptor protein ClpS [Streptomyces
himastatinicus ATCC 53653]
Length = 100
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ ++ ND M +V +V Q++F + A +ML VHH+G + E
Sbjct: 21 PEPDVPWVTVVHNDPVNLMSYVTYVFQSYFGYSKDKAHKLMLDVHHKGRAIVSSGSREEM 80
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
E V + H Y L + Q+
Sbjct: 81 ERDVQAM------HGYGLWATLTQE 99
>gi|225455872|ref|XP_002274839.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297734178|emb|CBI15425.3| unnamed protein product [Vitis vinifera]
Length = 157
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 9/128 (7%)
Query: 11 HRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYT 70
HR + A + + I +SE ++ YRVLL NDNY
Sbjct: 33 HRTMLMTVSAAAPGK--GSGVLERPTIERIMPGRESEFDLRKSRKMSPPYRVLLHNDNYN 90
Query: 71 PMEFVIHVLQNF-FYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQY 129
E+V+ VL + A IM + HH G+ + A AE Q+
Sbjct: 91 KREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGMSVVIICAQVDAEDHCMQLR------GN 144
Query: 130 PLQCIMEQ 137
L +E
Sbjct: 145 GLLSSIEP 152
>gi|229821222|ref|YP_002882748.1| ATP-dependent Clp protease adaptor protein ClpS [Beutenbergia
cavernae DSM 12333]
gi|229567135|gb|ACQ80986.1| ATP-dependent Clp protease adaptor protein ClpS [Beutenbergia
cavernae DSM 12333]
Length = 113
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+ VR + + ++ ND M +V +V Q +F A+ +M +VH +G +
Sbjct: 30 ETAVRHDRPWHTIVWNDPVNLMSYVTYVFQTYFGYSRAKAEKLMRQVHTEGKSIVSHGSR 89
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E+ V + H Y L + Q
Sbjct: 90 ERMEVDVQAM------HSYGLWATLGQD 111
>gi|170078679|ref|YP_001735317.1| putative ATP-dependent Clp protease adaptor protein [Synechococcus
sp. PCC 7002]
gi|169886348|gb|ACB00062.1| putative ATP-dependent Clp protease adaptor protein [Synechococcus
sp. PCC 7002]
Length = 97
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVH 98
+ E + + ++V+++ND++ E V H L + A + +VH
Sbjct: 3 PAPGILKESDRQTVRKPYPNFKVIVLNDDFNTFEHVAHCLMTYIPNMTADQAWNLTNQVH 62
Query: 99 HQGIGECGVYAYEIAEMKVNQVMN 122
G V E AE+ Q+
Sbjct: 63 FDGQAIVWVGPQEPAELYHQQLRR 86
>gi|329947434|ref|ZP_08294638.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces sp.
oral taxon 170 str. F0386]
gi|328525184|gb|EGF52235.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces sp.
oral taxon 170 str. F0386]
Length = 111
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ E+ S+ R +L+ ++ +D M +V V ++F A+ M++VH G
Sbjct: 6 PVAEPEILEESRARAQRLWCTVVHDDPINTMSYVTWVFHSYFGFSLPVAEARMMRVHTTG 65
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A E E+ V + H Y L+ +E
Sbjct: 66 RAVVSRGARERMEVDVTAM------HGYGLRATIEP 95
>gi|152967709|ref|YP_001363493.1| ATP-dependent Clp protease adaptor protein ClpS [Kineococcus
radiotolerans SRS30216]
gi|151362226|gb|ABS05229.1| ATP-dependent Clp protease adaptor protein ClpS [Kineococcus
radiotolerans SRS30216]
Length = 99
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
+ L+ ND M +V +V + F A +ML VH +G
Sbjct: 15 ETDLTTVPDTPWVTLVWNDPVNLMSYVAYVFRTHFGYSQAKADALMLDVHQKGRAAVSAG 74
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H Y L +++
Sbjct: 75 SREAMERDVEAM------HGYGLWATLQKD 98
>gi|282895992|ref|ZP_06304023.1| ATP-dependent Clp protease adaptor protein ClpS [Raphidiopsis
brookii D9]
gi|281199102|gb|EFA73972.1| ATP-dependent Clp protease adaptor protein ClpS [Raphidiopsis
brookii D9]
Length = 107
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y+++++ND++ E V L E A + +VH++G V E A
Sbjct: 28 KPYPNYKIIVLNDDFNTFEHVAKSLMKYIPGMTTEQAWELTNQVHYEGQAIVWVGPQEQA 87
Query: 114 EMKVNQVMNYS 124
E+ Q+
Sbjct: 88 ELYHQQLRRAG 98
>gi|296129169|ref|YP_003636419.1| ATP-dependent Clp protease adaptor protein ClpS [Cellulomonas
flavigena DSM 20109]
gi|296020984|gb|ADG74220.1| ATP-dependent Clp protease adaptor protein ClpS [Cellulomonas
flavigena DSM 20109]
Length = 100
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
D+ + ++ ND M +V +V Q F E A+ +M +VH +
Sbjct: 7 TTAPDTRPDVDEASSTADAWVTIVWNDPVNLMTYVTYVFQTHFGYAREKAERLMRQVHEE 66
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G E E+ V + H Y L +++
Sbjct: 67 GRAVVSTGNREAMEVDVQAM------HSYGLWATLQR 97
>gi|170078877|ref|YP_001735515.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
PCC 7002]
gi|169886546|gb|ACB00260.1| ATP-dependent Clp protease adaptor protein [Synechococcus sp. PCC
7002]
Length = 95
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 46 SEVRFSSKVRVP-KLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIG 103
E R +S +R P YRVLL ND++ ME V+ L A IM++ H GI
Sbjct: 6 IEQRSTSTIRKPAPRYRVLLHNDDFNSMEHVVQTLMQTVAGLTQPQAVSIMMEAHTNGIA 65
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E AE + + L +E
Sbjct: 66 LVITCVQEHAEFYCETLKM------HGLTSTIEPD 94
>gi|254446082|ref|ZP_05059558.1| ATP-dependent Clp protease adaptor protein ClpS [Verrucomicrobiae
bacterium DG1235]
gi|198260390|gb|EDY84698.1| ATP-dependent Clp protease adaptor protein ClpS [Verrucomicrobiae
bacterium DG1235]
Length = 98
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E + + ++ V+++ND M +V VL+ A+ M++VH +G
Sbjct: 10 ETETKDETALSDVWGVIVLNDPVNLMSYVTMVLERVLRMSRSKAEEHMMEVHQKGRSLVW 69
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E AE V Q+ + + L I+E+
Sbjct: 70 KGNREKAEGYVYQLQEW-----H-LSAILERD 95
>gi|148972604|ref|ZP_01811408.1| ATP-dependent Clp protease adaptor protein ClpS [Leptolyngbya
valderiana BDU 20041]
gi|148872733|gb|EDL71122.1| ATP-dependent Clp protease adaptor protein ClpS [Leptolyngbya
valderiana BDU 20041]
Length = 93
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIG 103
++ + S+ + YRVLL ND++ ME+V+ L + A IM++ H G+
Sbjct: 4 ETIEKRSTVRKHAPRYRVLLHNDDFNTMEYVVQTLVKTVPGLTQPQAVSIMMEAHTNGMA 63
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + + L +E
Sbjct: 64 LVITCAQEHAEFYCETLRR------HGLSSSIEPD 92
>gi|218246012|ref|YP_002371383.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
8801]
gi|257059062|ref|YP_003136950.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
8802]
gi|218166490|gb|ACK65227.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
8801]
gi|256589228|gb|ACV00115.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
8802]
Length = 97
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGECG 106
++ + YRVLL ND++ ME+V+ L A IM++ H G
Sbjct: 11 TSSATVRKPAPRYRVLLHNDDFNSMEYVVQTLMQTVAGMTQPQAVDIMMEAHTNGTALVI 70
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + N + L +E
Sbjct: 71 TCALEHAEFYCETLKN------HGLTSSIEPD 96
>gi|262201899|ref|YP_003273107.1| ATP-dependent Clp protease adaptor protein ClpS [Gordonia
bronchialis DSM 43247]
gi|262085246|gb|ACY21214.1| ATP-dependent Clp protease adaptor protein ClpS [Gordonia
bronchialis DSM 43247]
Length = 112
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 7/118 (5%)
Query: 21 LMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ 80
+ + A + D EV + + + ++ +D M +V V Q
Sbjct: 1 MSPDVTRAHEATPGGPGSGGAAVADPEV-ADGATDLDRPWMTIVWDDPVNLMRYVTFVFQ 59
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F A +M++VH +G + E V ++ L M++
Sbjct: 60 KIFGYSESKANQLMMQVHTEGKAVVSSGDRDKVETDVRKLHAA------GLWATMQRD 111
>gi|320534619|ref|ZP_08035064.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces sp.
oral taxon 171 str. F0337]
gi|320133139|gb|EFW25642.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces sp.
oral taxon 171 str. F0337]
Length = 111
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ E S+VR +L+ ++ +D M +V V ++F A+ M++VH G
Sbjct: 6 PVVKPETLEESRVRAQRLWCTVVHDDPINTMSYVTWVFHSYFGFSLPVAEARMMQVHTAG 65
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A E E+ V + H Y L+ +E
Sbjct: 66 RAVVSRGARERMEVDVTAM------HGYGLRATIEP 95
>gi|288921262|ref|ZP_06415546.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp. EUN1f]
gi|288347352|gb|EFC81645.1| ATP-dependent Clp protease adaptor protein ClpS [Frankia sp. EUN1f]
Length = 96
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV 107
+L+ ++ ND M +V +V + F + A +ML VHH+G
Sbjct: 12 EDVEDLPEDERLWVTIVWNDPINLMSYVTYVFRKLFGYSEQKATKLMLDVHHKGRATVTS 71
Query: 108 YAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E R H Y L + Q
Sbjct: 72 GTREEMEAAAE------RLHTYGLWATIAQD 96
>gi|325068392|ref|ZP_08127065.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces oris
K20]
Length = 105
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ E+ S+ R +L+ ++ +D M +V V ++F A+ M++VH G
Sbjct: 2 PVAEPEILEESRARTQRLWCTVVHDDPVNTMSYVTWVFHSYFGFSLPVAEARMMQVHTTG 61
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A E E+ V + H Y L+ +E
Sbjct: 62 RAVVSQGARERMEVDVTAM------HGYGLRATIEP 91
>gi|319948542|ref|ZP_08022673.1| ATP-dependent Clp protease adaptor protein ClpS [Dietzia cinnamea
P4]
gi|319437789|gb|EFV92778.1| ATP-dependent Clp protease adaptor protein ClpS [Dietzia cinnamea
P4]
Length = 97
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 26 FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK 85
M + + A+ D +D+ + ++ +D M +V V Q F
Sbjct: 2 AMPSAAPVETTDADLDGGVDN------------PWLTVVWDDPVNLMSYVTFVFQRVFGY 49
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A +MLKVH+ G + + E V ++ L M+++
Sbjct: 50 SREKAHELMLKVHNDGRAVVSSGSRDKVENDVRKLQEA------GLWATMQRE 96
>gi|256375147|ref|YP_003098807.1| ATP-dependent Clp protease adaptor protein ClpS [Actinosynnema
mirum DSM 43827]
gi|255919450|gb|ACU34961.1| ATP-dependent Clp protease adaptor protein ClpS [Actinosynnema
mirum DSM 43827]
Length = 99
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 41 DNCLDSEVRFSSKVRV----PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ + L+ ND M +V +V Q F + A +M+
Sbjct: 3 TPVEQERTQAEPVAEEGASADSPWMTLVWNDPVNLMSYVTYVFQKVFGYSKDHATKLMMD 62
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
VHH+G A + E V ++ H L M++
Sbjct: 63 VHHKGRAVVSSGAKDKMEADV------AKLHAAGLWATMQR 97
>gi|32477341|ref|NP_870335.1| hypothetical protein RB12137 [Rhodopirellula baltica SH 1]
gi|32447892|emb|CAD77410.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
gi|327537948|gb|EGF24645.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopirellula
baltica WH47]
Length = 116
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 39/90 (43%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
AE D + E R K + Y V+L +D ++VI +++ F E + +V
Sbjct: 9 AEPDVVTEEEQRSDRKPKRQPPYHVILWDDTDHSYDYVISMMKRLFRMPIEKGYQVAKEV 68
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
G C E+AE+K +Q+ + +
Sbjct: 69 DKSGRAICMTTTLELAELKRDQIHAFGKDE 98
>gi|300864591|ref|ZP_07109450.1| ATP-dependent Clp protease adaptor [Oscillatoria sp. PCC 6506]
gi|300337415|emb|CBN54598.1| ATP-dependent Clp protease adaptor [Oscillatoria sp. PCC 6506]
Length = 97
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 49 RFSSKVRVP-KLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECG 106
R S R P Y+V+++ND++ + V L + + A + +VH++G
Sbjct: 11 RSSQVTRKPYPNYKVIVLNDDFNTFQHVSECLVKYIPGMTSDRAWKLTNQVHYEGQATVW 70
Query: 107 VYAYEIAEMKVNQV 120
V E AE+ Q+
Sbjct: 71 VGPQEQAELYHMQL 84
>gi|56750848|ref|YP_171549.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus
elongatus PCC 6301]
gi|81596329|sp|Q5N3U1|CLPS_SYNP6 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|56685807|dbj|BAD79029.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 91
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGEC 105
+ ++K ++ YRVLL ND++ PME+V+ VL A IM++ H G G
Sbjct: 8 KPETTTKRKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLV 67
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQY 129
E AE Q+ ++ + Q+
Sbjct: 68 ITCDIEPAEFYCEQLKSHGLEQQH 91
>gi|466913|gb|AAA50888.1| B1549_C2_207 [Mycobacterium leprae]
Length = 94
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+ ++ +D M +V +V Q F A +ML+VH++G + + E E+ V
Sbjct: 20 RWVTIVWDDPVNLMAYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSMGSRESMEVDV- 78
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
S+ H L M+Q
Sbjct: 79 -----SKLHAAGLWATMQQD 93
>gi|226307371|ref|YP_002767331.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus
erythropolis PR4]
gi|226186488|dbj|BAH34592.1| putative ATP-dependent Clp protease adaptor protein ClpS
[Rhodococcus erythropolis PR4]
Length = 103
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
+ + ++ +D M +V +V Q F A +M++VH +G + + E
Sbjct: 26 DRPWVTIVWDDPVNLMHYVTYVFQKLFGYSKAKATDLMMQVHSEGKAVVSSGSRDKMEAD 85
Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
V R H L M++
Sbjct: 86 VR------RLHAAGLWATMQRD 101
>gi|119510612|ref|ZP_01629742.1| ATP-dependent Clp protease adaptor protein ClpS [Nodularia
spumigena CCY9414]
gi|119464773|gb|EAW45680.1| ATP-dependent Clp protease adaptor protein ClpS [Nodularia
spumigena CCY9414]
Length = 108
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y+V+++ND++ + V L + A + ++H++G V E+A
Sbjct: 29 KTYPNYKVIVLNDDFNTFQHVSECLMKYIPGMTGDRAWDLTNQIHYEGQAIVWVGPQEMA 88
Query: 114 EMKVNQVMNYS 124
E+ Q+
Sbjct: 89 ELYHQQLRRAG 99
>gi|186684027|ref|YP_001867223.1| ATP-dependent Clp protease adaptor protein ClpS [Nostoc punctiforme
PCC 73102]
gi|186466479|gb|ACC82280.1| ATP-dependent Clp protease adaptor protein ClpS [Nostoc punctiforme
PCC 73102]
Length = 93
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIG 103
++ + S+ ++ YRVLL ND+Y ME V+ L A IM++ H G+
Sbjct: 4 ETIQKPSTTRKLAPRYRVLLHNDDYNSMEHVVQSLIATVPSLTQPQAVSIMMEAHTNGLA 63
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE +++ + L +E
Sbjct: 64 LVITCALEHAEFYCETLIS------HGLSSTIEPD 92
>gi|116075699|ref|ZP_01472958.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
RS9916]
gi|116067014|gb|EAU72769.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
RS9916]
Length = 104
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLK 96
+ + + Y+VLL ND ME+V+ LQ + A +ML+
Sbjct: 8 PGPGGAAVLDKQTERVRKRSPRYKVLLHNDPVNSMEYVVSTLQQVVPQLSEQDAMAVMLE 67
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H+ G+G V E AE ++ L +E +
Sbjct: 68 AHNSGVGLVIVCDLEPAEFYCE--TLKAK----GLTSTLEPE 103
>gi|15827587|ref|NP_301850.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
leprae TN]
gi|221230064|ref|YP_002503480.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
leprae Br4923]
gi|13638637|sp|P53423|CLPS_MYCLE RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|13093138|emb|CAC31546.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933171|emb|CAR71260.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 108
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+ ++ +D M +V +V Q F A +ML+VH++G + + E E+ V
Sbjct: 34 RWVTIVWDDPVNLMAYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSMGSRESMEVDV- 92
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
S+ H L M+Q
Sbjct: 93 -----SKLHAAGLWATMQQD 107
>gi|124024066|ref|YP_001018373.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. MIT 9303]
gi|123964352|gb|ABM79108.1| Uncharacterized conserved protein [Prochlorococcus marinus str. MIT
9303]
Length = 120
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 13/131 (9%)
Query: 9 MYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDN 68
M R G L ++ + MA + + L+ + K Y+VLL ND
Sbjct: 1 MGERPTYIGALPIV--LAMAVNAPSPS--PGGAAVLEKQTERIRK--QSPHYKVLLHNDP 54
Query: 69 YTPMEFVIHVLQNFF-YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQH 127
ME+V+ LQ + A +ML+ H+ G+G V E AE ++
Sbjct: 55 VNSMEYVVVTLQQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDLEPAEFYCE--TLKAK-- 110
Query: 128 QYPLQCIMEQK 138
L +EQ+
Sbjct: 111 --GLTSTLEQE 119
>gi|108800817|ref|YP_641014.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium sp.
MCS]
gi|119869957|ref|YP_939909.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium sp.
KMS]
gi|126436415|ref|YP_001072106.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium sp.
JLS]
gi|108771236|gb|ABG09958.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium sp.
MCS]
gi|119696046|gb|ABL93119.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium sp.
KMS]
gi|126236215|gb|ABN99615.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium sp.
JLS]
Length = 88
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+ ++ +D M +V +VLQ F A +ML+VH++G + E E+ V
Sbjct: 14 PWVTIVWDDPVNLMTYVTYVLQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEVDV- 72
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
S+ H L M+Q
Sbjct: 73 -----SKLHAAGLWATMQQD 87
>gi|226506038|ref|NP_001150373.1| ATP-dependent Clp protease adaptor protein ClpS containing protein
[Zea mays]
gi|194701596|gb|ACF84882.1| unknown [Zea mays]
gi|195610704|gb|ACG27182.1| ATP-dependent Clp protease adaptor protein ClpS containing protein
[Zea mays]
gi|195638746|gb|ACG38841.1| ATP-dependent Clp protease adaptor protein ClpS containing protein
[Zea mays]
Length = 160
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLK 96
+ SE ++ YRV+L NDNY E+V+ VL + A IM +
Sbjct: 61 EKTTPGRQSEFDVKKSRKMSPPYRVILHNDNYNRREYVVKVLMKVIPGMTVDNAVNIMQE 120
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H G+ V + AE + L+ +E
Sbjct: 121 AHVNGLSVVIVCSQSEAEEHCTSLR------GNGLRSSIEP 155
>gi|120405250|ref|YP_955079.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
vanbaalenii PYR-1]
gi|119958068|gb|ABM15073.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
vanbaalenii PYR-1]
Length = 100
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M A D +VR + P + ++ +D M +V +V Q F A
Sbjct: 1 MVTPAKARPGTREDRDVREDATTDAP--WVTIVWDDPVNLMTYVTYVFQKLFGYSEPHAT 58
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+M++VH++G + E E+ V R H L ++Q
Sbjct: 59 KLMMQVHNEGKAVVSAGSRESMEVDVT------RLHAAGLWATLQQD 99
>gi|50954981|ref|YP_062269.1| ATP-dependent Clp protease adaptor protein ClpS [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|50951463|gb|AAT89164.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 97
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D+ + ++ P + ++ ND M +V +V +++F A+ +ML VH +G
Sbjct: 7 PERDTGLEARLRLGEP--WVTIVWNDPVNLMSYVTYVFESYFVYPAREAERLMLLVHTEG 64
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E E V + H + L + +
Sbjct: 65 KAGVATGTREEMERHVEAM------HGFGLWATLTK 94
>gi|33241103|ref|NP_876045.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|33238633|gb|AAQ00698.1| Uncharacterized conserved protein [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 103
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAK 91
N +D + K Y+VLL ND M++V+ L Q + A
Sbjct: 4 NPGRGPGGAAVVDKQTERVRKT--SPRYKVLLHNDPVNTMDYVVTTLRQVVPQLSEQDAM 61
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML+ H+ GIG E AE + L +E +
Sbjct: 62 AVMLETHNTGIGLVITCDLEPAEFYSESLK------GKGLTSTIEPE 102
>gi|209526864|ref|ZP_03275384.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira maxima
CS-328]
gi|209492735|gb|EDZ93070.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira maxima
CS-328]
Length = 97
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 49 RFSSKVRVP-KLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLKVHHQGIGECG 106
R S VR P Y+V+++ND++ + V + L + + A + +VH++G
Sbjct: 11 RSSQTVRKPYPNYKVIVLNDDFNTFQHVANCLMKYLPGMTSDQAWELTNRVHYEGQATVW 70
Query: 107 VYAYEIAEMKVNQV 120
V E AE+ Q+
Sbjct: 71 VGPLEQAELYHTQL 84
>gi|242081547|ref|XP_002445542.1| hypothetical protein SORBIDRAFT_07g021160 [Sorghum bicolor]
gi|241941892|gb|EES15037.1| hypothetical protein SORBIDRAFT_07g021160 [Sorghum bicolor]
Length = 159
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLK 96
+ SE ++ YRV+L NDNY E+V+ VL + A IM +
Sbjct: 60 EKTTPGRQSEFDVKKSRKMSPPYRVILHNDNYNRREYVVQVLMKVIPGMTVDNAVNIMQE 119
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H G+ V + AE + L+ +E
Sbjct: 120 AHVNGLSVVIVCSQSEAEEHCTSLR------GNGLRSSIEP 154
>gi|227495764|ref|ZP_03926075.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces
urogenitalis DSM 15434]
gi|226834693|gb|EEH67076.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces
urogenitalis DSM 15434]
Length = 109
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
++ + R S + + +R ++ +D M++V+ V +++F A M++
Sbjct: 1 MSASAPVASPDTREDSATQRLERWRTVVHDDPVNTMDYVVWVFRSYFRFPLSLAHQRMMQ 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
VH G E E+ V + H Y L+ +E
Sbjct: 61 VHTTGRAIVSRGPRERMEVDVTAM------HSYGLRATIEPD 96
>gi|186684201|ref|YP_001867397.1| ATP-dependent Clp protease adaptor [Nostoc punctiforme PCC 73102]
gi|186466653|gb|ACC82454.1| ATP-dependent Clp protease adaptor protein ClpS [Nostoc punctiforme
PCC 73102]
Length = 108
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 36 GIAEFDNCLDSEVRFSSKV--RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKC 92
+ SS+V + Y+V+++ND++ + V L + A
Sbjct: 8 DVYGMTTAPTITPERSSQVTRKTYPNYKVIVLNDDFNTFQHVAECLMKYIPGMSGDRAWD 67
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMNYS 124
+ +VH++G V E AE+ Q+
Sbjct: 68 LTNQVHYEGQAIVWVGPQEPAELYHQQLRRAG 99
>gi|331695359|ref|YP_004331598.1| ATP-dependent Clp protease adapter protein clpS [Pseudonocardia
dioxanivorans CB1190]
gi|326950048|gb|AEA23745.1| ATP-dependent Clp protease adapter protein clpS [Pseudonocardia
dioxanivorans CB1190]
Length = 98
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
++ + P ++ ++ ND M +V +VLQ F A +ML V
Sbjct: 6 PVPTRQVEEVTDEAGTADTP--WQAIVWNDPVNLMSYVTYVLQKLFGYPEPKATALMLDV 63
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
HH+G + E ++ ++ H L M++
Sbjct: 64 HHKGKAAVSSGDKDKIE------IDVAKLHAAGLWATMQR 97
>gi|284929541|ref|YP_003422063.1| hypothetical protein UCYN_10070 [cyanobacterium UCYN-A]
gi|284809985|gb|ADB95682.1| uncharacterized conserved protein [cyanobacterium UCYN-A]
Length = 97
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHH 99
D + S+ + Y+VLL ND++ PM++V+ +L A IM++ H
Sbjct: 4 DVIEKISLNTSTTKKPVPRYKVLLHNDDFNPMDYVVQILMQTISGMTRPQAAEIMMEAHI 63
Query: 100 QGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G A+E AE + N + L +E
Sbjct: 64 SGTALVITCAFEPAEFYRETLKN------HGLSSSIEPD 96
>gi|307150152|ref|YP_003885536.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7822]
gi|306980380|gb|ADN12261.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7822]
Length = 108
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y+V+++ND++ E V L + A + +VH +G V E A
Sbjct: 29 KTYPNYKVIVLNDDFNTFEHVAKCLMKYIPGMTSDRAWELTNQVHFEGQAIVWVGPQEQA 88
Query: 114 EMKVNQVMN 122
E+ Q+
Sbjct: 89 ELYHQQLRR 97
>gi|291567197|dbj|BAI89469.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira
platensis NIES-39]
Length = 97
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 49 RFSSKVRVP-KLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLKVHHQGIGECG 106
R S VR P Y+V+++ND++ + V + L + + A + +VH++G
Sbjct: 11 RSSQTVRKPYPNYKVIVLNDDFNTFQHVANCLMKYLPGMTSDQAWELTNRVHYEGQATVW 70
Query: 107 VYAYEIAEMKVNQV 120
V E AE+ Q+
Sbjct: 71 VGPLEQAELYHTQL 84
>gi|320095957|ref|ZP_08027575.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces sp.
oral taxon 178 str. F0338]
gi|319977114|gb|EFW08839.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces sp.
oral taxon 178 str. F0338]
Length = 107
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
+++ ++ +D M +V VLQ F A +M++VH G E E V
Sbjct: 26 PVWQAVVWDDPVNLMGYVTAVLQRHFGYSRARAHELMMRVHTTGRAVVNSGPRERIEADV 85
Query: 118 NQVMNYSRQHQYPLQCIMEQ 137
+ H Y L+ ME
Sbjct: 86 VAL------HTYGLRATMEP 99
>gi|256832121|ref|YP_003160848.1| ATP-dependent Clp protease adaptor protein ClpS [Jonesia
denitrificans DSM 20603]
gi|256685652|gb|ACV08545.1| ATP-dependent Clp protease adaptor protein ClpS [Jonesia
denitrificans DSM 20603]
Length = 99
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+ +++ ND M +V V +F A +M+ VH +G + E E V
Sbjct: 24 PWVLIVWNDPVNLMNYVEWVFHTYFNYPRGQAHQLMMTVHTEGRAVVATGSREKIEFDVQ 83
Query: 119 QVMNYSRQHQYPLQCIM 135
+ H Y L M
Sbjct: 84 AM------HNYGLWATM 94
>gi|172038476|ref|YP_001804977.1| putative ATP-dependent Clp protease adaptor protein [Cyanothece sp.
ATCC 51142]
gi|171699930|gb|ACB52911.1| putative ATP-dependent Clp protease, adaptor protein [Cyanothece
sp. ATCC 51142]
Length = 108
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKV--RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYK 85
S+ GI + + S+ + + Y+V+++ND++ V + L
Sbjct: 1 MSKRLSTGIQGMATSTSTAPKGSTVIDRKPYPNYKVIVLNDDFNTFNHVANCLMKYIPGM 60
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+ A + +VH +G+ E AE+ Q+
Sbjct: 61 SSDRAWELTEQVHFEGLAIVWTGPQEQAELYHQQLRR 97
>gi|161353432|ref|NP_898239.2| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 8102]
Length = 106
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYK 85
MA + ++ K Y+VLL ND ME+V+ L Q
Sbjct: 1 MAMAVDTPTRSPGGAAVMEKAPERVRK--QSPRYKVLLHNDPVNTMEYVVTTLRQVVPQL 58
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +M++ H+ G+G V E AE + L +E +
Sbjct: 59 SEQDAMAVMIEAHNTGVGLVIVCDLEPAEFYCETLKAK------GLTSTIEPE 105
>gi|113954242|ref|YP_729603.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
CC9311]
gi|113881593|gb|ABI46551.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
CC9311]
Length = 103
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETA 90
LD + K Y+VLL ND ME+V+ LQ + A
Sbjct: 3 DTPSRSPGGAAVLDKQTERVRKT--SPRYKVLLHNDPVNSMEYVVVTLQQVVPQLSEQDA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML+ H+ GIG V E AE + N L +E +
Sbjct: 61 MAVMLETHNTGIGLVIVCDIEPAEFYCETLKNK------GLTSTIEPE 102
>gi|148238705|ref|YP_001224092.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 7803]
gi|147847244|emb|CAK22795.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 7803]
Length = 106
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYK 85
M + L+ K Y+VLL ND ME+V+ L Q
Sbjct: 1 MVMAVETPSRTPGGAAVLEKAPERVRK--QSPRYKVLLHNDPVNSMEYVVSTLRQVVPQL 58
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML+ H+ G+G V E AE + L +E +
Sbjct: 59 SEQDAMAVMLEAHNTGVGLVIVCDLEPAEFYCETLK------GKGLTSTIEPE 105
>gi|299115355|emb|CBN74180.1| ATP-dependent Clp protease adaptor protein ClpS [Ectocarpus
siliculosus]
Length = 152
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 17 GILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVI 76
L + + + M + + I D EV F + +R Y+VLL NDN E+V
Sbjct: 39 SALNMAAGVAMPEIKTAGPSIGVLD---KKEVSFETSIRPEDKYKVLLFNDNGNTREYVS 95
Query: 77 HVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQ-YP 130
L TA IM + + G+ + G++ E+A+ + + +P
Sbjct: 96 RSLVQVVGLSEATAFHIMQQANDNGMAQVGIWHQEMADAYSTSLKERGLIAETHP 150
>gi|297625964|ref|YP_003687727.1| ATP-dependent Clp protease adaptor protein clpS [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921729|emb|CBL56287.1| ATP-dependent Clp protease adaptor protein clpS [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 103
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ + R + + ++ +D M +V HV ++F+ + A+ +M++
Sbjct: 7 MTAPEGGTALAERPAEDALSANPWVTVVWDDPVNLMSYVTHVFCSYFHYSRDRAERLMMQ 66
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
VH +G E E VN + H + L +
Sbjct: 67 VHMEGKAVVSSGGREEMERDVNAM------HGFGLWATV 99
>gi|325002222|ref|ZP_08123334.1| ATP-dependent Clp protease adaptor protein ClpS [Pseudonocardia sp.
P1]
Length = 107
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
++ ++ ND M +V +VLQ F +TA +ML V
Sbjct: 13 PSPSPTEQVSPDTDDATSPDTPWQAIVWNDPVNLMSYVTYVLQKVFDYPEQTANALMLDV 72
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
HH+G + E+ V ++ H L M++
Sbjct: 73 HHKGKAAVSSGDKDTVEVHV------AKLHAAGLWATMQR 106
>gi|220909224|ref|YP_002484535.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7425]
gi|219865835|gb|ACL46174.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7425]
Length = 112
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGV 107
+ + Y+V+++ND++ E V L + A + +V +G V
Sbjct: 27 DRQTIRQPYPHYKVIVLNDDFNTFEHVAKCLMKYIPNMTSDRAWELTYQVDREGQAIVWV 86
Query: 108 YAYEIAEMKVNQV 120
E AE+ Q+
Sbjct: 87 GPQEQAELYHLQL 99
>gi|33864059|ref|NP_895619.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. MIT 9313]
gi|33635643|emb|CAE21967.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 130
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Query: 25 IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF- 83
I +A + L+ + K Y+VLL ND ME+V+ LQ
Sbjct: 23 IVLAMAVNAPSPTPGGAAVLEKQTERIRK--QSPHYKVLLHNDPVNSMEYVVVTLQQVVP 80
Query: 84 YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML+ H+ G+G V E AE ++ L +EQ+
Sbjct: 81 QLSEQDAMAVMLEAHNTGVGLVIVCDLEPAEFYCE--TLKAK----GLTSTLEQE 129
>gi|225021570|ref|ZP_03710762.1| hypothetical protein CORMATOL_01591 [Corynebacterium matruchotii
ATCC 33806]
gi|305681385|ref|ZP_07404192.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
matruchotii ATCC 14266]
gi|224945561|gb|EEG26770.1| hypothetical protein CORMATOL_01591 [Corynebacterium matruchotii
ATCC 33806]
gi|305659590|gb|EFM49090.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
matruchotii ATCC 14266]
Length = 133
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 7/127 (5%)
Query: 11 HRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYT 70
R D + S + + ++ E+ + ++ +D
Sbjct: 12 QRGDGDPRARINSEFDPPPTAITLS-SPMATPGVEQELEVDMATSENLPWVCIVWDDPVN 70
Query: 71 PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
M +V +V Q D + A +M++VH +G + E V + H +
Sbjct: 71 LMSYVTYVFQTVLGYDKKRAMELMMQVHTEGKAAVSSGEKDKVEADVK------KLHTHG 124
Query: 131 LQCIMEQ 137
L M+Q
Sbjct: 125 LWATMQQ 131
>gi|168704346|ref|ZP_02736623.1| ATP-dependent Clp protease adaptor protein ClpS [Gemmata
obscuriglobus UQM 2246]
Length = 108
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 39/88 (44%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
++ +++V + R Y V+L+ND+ E+VI +L+ F E +
Sbjct: 1 MSGPTTLPETDVETEQRTRRQPPYHVVLLNDDDHSYEYVIEMLKALFGHPVEKGFLLARL 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYS 124
V +G + E AE+K +Q+ Y
Sbjct: 61 VDTEGRAIVCTTSLERAELKRDQIHAYG 88
>gi|113474895|ref|YP_720956.1| ATP-dependent Clp protease adaptor protein ClpS [Trichodesmium
erythraeum IMS101]
gi|110165943|gb|ABG50483.1| ATP-dependent Clp protease adaptor protein ClpS [Trichodesmium
erythraeum IMS101]
Length = 95
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 50 FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGECGVY 108
S+ + YRVLL ND++ ME+V+ L A IM++ H GI +
Sbjct: 11 TSTVRKTAPHYRVLLHNDDFNSMEYVVQTLMKTVPSLTQPQAVNIMMEAHSNGIALVIIC 70
Query: 109 AYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + N + L +E
Sbjct: 71 ALEPAEFYCENLKN------HGLTSTIEPD 94
>gi|223943781|gb|ACN25974.1| unknown [Zea mays]
Length = 119
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLK 96
+ SE ++ YRV+L NDNY E+V+ VL + A IM +
Sbjct: 20 EKTTPGRQSEFDVKKSRKMSPPYRVILHNDNYNRREYVVKVLMKVIPGMTVDNAVNIMQE 79
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H G+ V + AE + L+ +E
Sbjct: 80 AHVNGLSVVIVCSQSEAEEHCTSLR------GNGLRSSIEP 114
>gi|38234427|ref|NP_940194.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
diphtheriae NCTC 13129]
gi|67460296|sp|Q6NFN0|CLPS_CORDI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|38200690|emb|CAE50386.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 113
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
D + EV S + + ++ +D M +V +V Q + A +M++V
Sbjct: 22 PSLDEEMAVEVASSENL----PWMCIVWDDPVNLMSYVTYVFQTILGYSKKRATELMMQV 77
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H +G + E V ++ L M+Q
Sbjct: 78 HTEGKAVVSSGERDKVEADVKKLHTA------GLWATMQQ 111
>gi|37521807|ref|NP_925184.1| ATP-dependent Clp protease adaptor [Gloeobacter violaceus PCC 7421]
gi|35212805|dbj|BAC90179.1| gsl2238 [Gloeobacter violaceus PCC 7421]
Length = 95
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECG 106
+ + V+ K ++V+++ND++ + V + L + + + A + +VH +G
Sbjct: 9 TKPETSVKALKPWKVIVLNDDFNTFQHVANCLVKYIPHMHPDRAWKLTQQVHSEGRAIVW 68
Query: 107 VYAYEIAEMKVNQV 120
V E AE+ Q+
Sbjct: 69 VGPLEQAELYHEQL 82
>gi|326330823|ref|ZP_08197124.1| ATP-dependent Clp protease adaptor protein ClpS [Nocardioidaceae
bacterium Broad-1]
gi|325951353|gb|EGD43392.1| ATP-dependent Clp protease adaptor protein ClpS [Nocardioidaceae
bacterium Broad-1]
Length = 91
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E V + ++ ND M +V V Q +F + ++ +M++VH+ G
Sbjct: 5 EPEVDDLVAPATPWVTIVWNDPVNLMSYVTFVFQKYFGYSKKKSEKLMMEVHNDGKSAVS 64
Query: 107 VYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E E V + H+Y L +E++
Sbjct: 65 SGSREEMERDVQAM------HEYGLWATLEKQ 90
>gi|166363445|ref|YP_001655718.1| ATP-dependent Clp protease adaptor [Microcystis aeruginosa
NIES-843]
gi|166085818|dbj|BAG00526.1| ATP-dependent Clp protease adaptor protein [Microcystis aeruginosa
NIES-843]
Length = 97
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQ 100
+ + Y+V+++ND++ + V + L + + A + +VH+Q
Sbjct: 5 PSTTLDKSTQVVKKTYPNYKVIVLNDDFNTFDHVANCLIKYIPDMTTDRAWELTNQVHYQ 64
Query: 101 GIGECGVYAYEIAEMKVNQVMN 122
G E AE+ Q+
Sbjct: 65 GQAIVWTGPQEQAELYHQQLRR 86
>gi|269795793|ref|YP_003315248.1| hypothetical protein Sked_25090 [Sanguibacter keddieii DSM 10542]
gi|269097978|gb|ACZ22414.1| uncharacterized conserved protein [Sanguibacter keddieii DSM 10542]
Length = 97
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ ++ V P + L+ ND T M +V++V +++F A +M++VH +G
Sbjct: 7 PGQEERQDTAASVGEP--WVTLVWNDPVTTMNYVVYVFESYFGFSERHAHRLMMQVHSEG 64
Query: 102 IGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
E EM V + H + L M++
Sbjct: 65 KAVVSTGGREKVEMDVQAM------HSFGLWATMQR 94
>gi|300932720|ref|ZP_07147976.1| hypothetical protein CresD4_01530 [Corynebacterium resistens DSM
45100]
Length = 101
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M + ++ +P + + +D M +V +V Q + A
Sbjct: 1 MTSPAAPSATPVQERLPETDTEANLP--WMCICWDDPVNLMSYVTYVFQTVLGYSRKRAT 58
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+M++VH++G + E V ++ L M++
Sbjct: 59 ELMMQVHNEGKAVVSSGERDKVEADVKKLQTA------GLWATMQR 98
>gi|256371012|ref|YP_003108836.1| ATP-dependent Clp protease adaptor protein ClpS [Acidimicrobium
ferrooxidans DSM 10331]
gi|256007596|gb|ACU53163.1| ATP-dependent Clp protease adaptor protein ClpS [Acidimicrobium
ferrooxidans DSM 10331]
Length = 96
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E ++ R + + +L +D + +VI+VLQ F A + ++VH++G
Sbjct: 10 VESEEVAETRTEESWATILWDDPVNLISYVIYVLQATFAFSKVKATELTMQVHNEGKAIV 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
+ E E S+ H Y L +
Sbjct: 70 ATGSREDME------DAASKLHAYGLWATV 93
>gi|298491120|ref|YP_003721297.1| ATP-dependent Clp protease adaptor protein ClpS ['Nostoc azollae'
0708]
gi|298233038|gb|ADI64174.1| ATP-dependent Clp protease adaptor protein ClpS ['Nostoc azollae'
0708]
Length = 108
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y+V+++ND++ ++V L + A + +VH++G V E A
Sbjct: 29 KTYPNYKVIVLNDDFNTFQYVAECLMKYIPGMSGDLAWDLTNQVHYEGQAIVWVGPQEPA 88
Query: 114 EMKVNQVMNYS 124
E+ Q+
Sbjct: 89 ELYHQQLRRAG 99
>gi|327332411|gb|EGE74147.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL097PA1]
Length = 95
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++ +D M++V V +F E A +M++VH+QG + E E+ V+
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHNQGRATVAEGSKEEMEVAVHA 79
Query: 120 VMNYSRQHQYPLQCIMEQ 137
+ H Y LQ +E+
Sbjct: 80 M------HGYGLQASVEK 91
>gi|25028966|ref|NP_739020.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
efficiens YS-314]
gi|23494253|dbj|BAC19220.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 186
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 6/113 (5%)
Query: 25 IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
+ + + D E+ + + ++ +D M +V +V Q
Sbjct: 78 VGASGVPPVCSSPSAPTAEPDVEMDVHTVSSENLPWLCIVWDDPVNLMSYVTYVFQTVLG 137
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ A +M++VH +G + E V ++ L M+Q
Sbjct: 138 YSRKRANELMMQVHTEGKAVVSSGEKDKVEGDVKKLHVA------GLWATMQQ 184
>gi|218246561|ref|YP_002371932.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
8801]
gi|257059601|ref|YP_003137489.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
8802]
gi|218167039|gb|ACK65776.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
8801]
gi|256589767|gb|ACV00654.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
8802]
Length = 97
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y+V+++ND++ E V L + A + +VH +G V E A
Sbjct: 18 KPYPNYKVIVLNDDFNSFEHVAKCLMTYIPGMTSDRAWELTNQVHFEGQATVWVGPQEQA 77
Query: 114 EMKVNQVMN 122
E+ Q+
Sbjct: 78 ELYHQQLRR 86
>gi|126656780|ref|ZP_01727994.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp.
CCY0110]
gi|126622000|gb|EAZ92708.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp.
CCY0110]
Length = 97
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y+V+++ND++ V + L + A + +VH +G+ E A
Sbjct: 18 KPYPNYKVIVLNDDFNTFNHVANCLMKYIPGMSSDRAWELTEQVHFEGLAIVWTGPQEQA 77
Query: 114 EMKVNQVMN 122
E+ Q+
Sbjct: 78 ELYHQQLRR 86
>gi|308177064|ref|YP_003916470.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrobacter
arilaitensis Re117]
gi|307744527|emb|CBT75499.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrobacter
arilaitensis Re117]
Length = 94
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
D F + K +R+++ ND M +V +V +++F E A+ +ML+VHH G
Sbjct: 6 DVISEFETLESQDKPWRLIVWNDPVNLMSYVAYVFRSYFGVSPEKAEKLMLQVHHDGFCT 65
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
+ E E V + H + L M
Sbjct: 66 VRSGSREAIESDVQAM------HGFGLNATM 90
>gi|72382903|ref|YP_292258.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. NATL2A]
gi|72002753|gb|AAZ58555.1| conserved hypothetical protein [Prochlorococcus marinus str.
NATL2A]
Length = 123
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETA 90
+ +D EV+ K+ Y+VLL ND M++V+ +L Q + A
Sbjct: 23 DSANQTDGDTAVIDREVQRVRKI--SPKYKVLLHNDPVNTMDYVVEILRQVVPQLSEQDA 80
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML+ H+ G+G E AE + L +E +
Sbjct: 81 LNIMLETHNNGVGLVITCDLEPAEFYSESLKAK------GLTSTIELE 122
>gi|67924069|ref|ZP_00517517.1| ATP-dependent Clp protease adaptor protein ClpS [Crocosphaera
watsonii WH 8501]
gi|67854068|gb|EAM49379.1| ATP-dependent Clp protease adaptor protein ClpS [Crocosphaera
watsonii WH 8501]
Length = 97
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKV 97
D S+ + YRVLL ND++ ME+V+ L A IM++
Sbjct: 2 TTDVIEKPSSSTSTVRKPAPRYRVLLHNDDFNSMEYVVQTLMQTVPSITQPQAVDIMMEA 61
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H G A E AE + N + L +E
Sbjct: 62 HSNGTALVITCALEPAEFYSETLKN------HGLTSTIEPD 96
>gi|258651917|ref|YP_003201073.1| ATP-dependent Clp protease adaptor protein ClpS [Nakamurella
multipartita DSM 44233]
gi|258555142|gb|ACV78084.1| ATP-dependent Clp protease adaptor protein ClpS [Nakamurella
multipartita DSM 44233]
Length = 103
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 50 FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYA 109
+ + ++ ND M +V V Q A+ +ML VHH+G
Sbjct: 20 TETVTTPEAPWVTIVWNDPVNLMSYVTLVFQKLLGHPRPKAEALMLDVHHKGRATVSSGP 79
Query: 110 YEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V ++ L M +
Sbjct: 80 REKMEADV------AKLQAAGLWATMAKD 102
>gi|227542814|ref|ZP_03972863.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181440|gb|EEI62412.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 100
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ +D +V ++ +P + ++ +D M +V HV + A
Sbjct: 1 MSMPASPLATPDVDVDVEVATSENLP--WMCIVWDDPVNLMSYVTHVFMTMLGYSRKRAT 58
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+M++VH +G + E V ++ L M+Q
Sbjct: 59 ELMMQVHTEGKAVVSSGERDKVEADVKKMHTA------GLWATMQQ 98
>gi|227488216|ref|ZP_03918532.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091786|gb|EEI27098.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 100
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ + +D +V ++ +P + ++ +D M +V HV + A
Sbjct: 1 MSMPALPLATPDVDVDVEVATSENLP--WMCIVWDDPVNLMSYVTHVFMTMLGYSRKRAT 58
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+M++VH +G + E V ++ L M+Q
Sbjct: 59 ELMMQVHTEGKAVVSSGERDKVEADVKKMHTA------GLWATMQQ 98
>gi|159031002|emb|CAO88704.1| clpS [Microcystis aeruginosa PCC 7806]
Length = 97
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQ 100
+ + Y+V+++ND++ + V + L + + A + +VH+Q
Sbjct: 5 PSTTLDKSTQGVKKTYPNYKVIVLNDDFNTFDHVANCLIKYIPDMTTDRAWELTNQVHYQ 64
Query: 101 GIGECGVYAYEIAEMKVNQVMN 122
G E AE+ Q+
Sbjct: 65 GQAIVWTGPQEPAELYHQQLRR 86
>gi|67924463|ref|ZP_00517887.1| ATP-dependent Clp protease adaptor protein ClpS [Crocosphaera
watsonii WH 8501]
gi|67853690|gb|EAM49025.1| ATP-dependent Clp protease adaptor protein ClpS [Crocosphaera
watsonii WH 8501]
Length = 108
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKV--RVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYK 85
S+ GI + + ++ V + Y+V+++ND++ + V L +
Sbjct: 1 MSKRLSIGIRGMATSTSTAPKGATVVERKRYPNYKVIVLNDDFNTFDHVAKCLLKYIPGM 60
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+ A + +VH +G+ E AE+ Q+
Sbjct: 61 SSDRAWELTEQVHFEGLATVWTGPQEQAELYHQQLRR 97
>gi|218441397|ref|YP_002379726.1| ATP-dependent Clp protease adaptor [Cyanothece sp. PCC 7424]
gi|218174125|gb|ACK72858.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7424]
Length = 108
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y+V+++ND++ + V + L + A + +VH++G V E A
Sbjct: 29 KTYPNYKVIVLNDDFNTFQHVANCLMKYIPGMTSDRAWELTNQVHYEGQATVWVGPQEQA 88
Query: 114 EMKVNQVMN 122
E+ Q+
Sbjct: 89 ELYHQQLRR 97
>gi|159904162|ref|YP_001551506.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. MIT 9211]
gi|159889338|gb|ABX09552.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9211]
Length = 116
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 39 EFDNCLDSEVRFSSKV--RVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIML 95
+ + S++ + Y+VLL ND M++V+ L Q + A +ML
Sbjct: 19 GSSPGGATVIEKQSELVRKRSPRYKVLLHNDPVNSMDYVVTTLRQVVPQLSEQDALAVML 78
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ H+ G+G V E AE + L +E++
Sbjct: 79 EAHNTGVGLVIVCDLEPAEFYSESLKAK------GLSSTIEKE 115
>gi|87125032|ref|ZP_01080879.1| hypothetical protein RS9917_03483 [Synechococcus sp. RS9917]
gi|86167352|gb|EAQ68612.1| hypothetical protein RS9917_03483 [Synechococcus sp. RS9917]
Length = 111
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYK 85
+A LD + K Y+VLL ND ME+V+ L Q
Sbjct: 6 LAMVGSTSSTSPGGAAVLDKQTERVRK--HSPRYKVLLHNDPVNTMEYVVTTLRQVVPQL 63
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML+ H+ G+G V E AE ++ L +E +
Sbjct: 64 SEQDAMAVMLEAHNTGVGLVIVCDLEPAEFYCE--TLKAK----GLTSTLEPE 110
>gi|289424879|ref|ZP_06426658.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes SK187]
gi|289154578|gb|EFD03264.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes SK187]
gi|313763390|gb|EFS34754.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL013PA1]
gi|313814686|gb|EFS52400.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL059PA1]
gi|314914532|gb|EFS78363.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL005PA4]
gi|314917600|gb|EFS81431.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL050PA1]
gi|314919644|gb|EFS83475.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL050PA3]
gi|314930283|gb|EFS94114.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL067PA1]
gi|314957639|gb|EFT01742.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL002PA1]
gi|314968978|gb|EFT13076.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL037PA1]
gi|315098015|gb|EFT69991.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL059PA2]
gi|315102639|gb|EFT74615.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL046PA1]
gi|315104470|gb|EFT76446.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL050PA2]
gi|327451218|gb|EGE97872.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL087PA3]
gi|327452575|gb|EGE99229.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL083PA2]
gi|328751971|gb|EGF65587.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL025PA2]
gi|328754785|gb|EGF68401.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL087PA1]
Length = 95
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++ +D M++V V +F E A +M++VH+QG + E E+ V+
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHNQGRATVAEGSKEEMEVAVHA 79
Query: 120 VMNYSRQHQYPLQCIMEQ 137
+ H Y LQ +E+
Sbjct: 80 M------HGYGLQASVEK 91
>gi|261886350|ref|ZP_06010389.1| ATP-dependent Clp protease adaptor protein ClpS [Campylobacter
fetus subsp. venerealis str. Azul-94]
Length = 76
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
S + K P L++V+L+ND T M+FV+ +L + F K A +M+K H G
Sbjct: 3 TKKSSITKTKIKDFKPNLFKVMLLNDEVTTMDFVVMILIDIFNKSKNEAIELMVKNHQSG 62
Query: 102 IGECGVYAYEIAEM 115
C EIA+
Sbjct: 63 RAICRFSTKEIAQT 76
>gi|159029424|emb|CAO90801.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 95
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 44 LDSEVRFSSKV--RVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQ 100
+ + S+ + YRVLL ND++ ME+V+ L A IM++ H
Sbjct: 3 TEVIEKRSTATIRKPAPRYRVLLHNDDFNSMEYVVQSLMQTIAGMTQPQAVDIMMEAHTN 62
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G E AE + N L +E
Sbjct: 63 GTALVITCIQEHAEFYCETLKNK------GLTSSIEPD 94
>gi|119490026|ref|ZP_01622650.1| ATP-dependent Clp protease adaptor protein ClpS [Lyngbya sp. PCC
8106]
gi|119454178|gb|EAW35330.1| ATP-dependent Clp protease adaptor protein ClpS [Lyngbya sp. PCC
8106]
Length = 97
Score = 81.8 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 49 RFSSKVRVP-KLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECG 106
R S + P Y+V+++ND++ E V L + + A + +VH +G
Sbjct: 11 RSSQVTQQPYPNYKVIVLNDDFNTFEHVSSCLMKYIPGMNSDLAWKLTNQVHFEGQATVW 70
Query: 107 VYAYEIAEMKVNQV 120
V E AE+ Q+
Sbjct: 71 VGPLEQAELYHTQL 84
>gi|124026645|ref|YP_001015760.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. NATL1A]
gi|123961713|gb|ABM76496.1| Uncharacterized conserved protein [Prochlorococcus marinus str.
NATL1A]
Length = 123
Score = 81.8 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETA 90
+ +D EV+ K+ Y+VLL ND M++V+ L Q + A
Sbjct: 23 DSANQTDGDTAVIDREVQRVRKI--SPKYKVLLHNDPVNTMDYVVDTLRQVVPQLSEQDA 80
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML+ H+ G+G E AE + L +E +
Sbjct: 81 LNIMLETHNNGVGLVITCDLEPAEFYSESLKAK------GLTSTIELE 122
>gi|166367986|ref|YP_001660259.1| ATP-dependent Clp protease adaptor protein ClpS [Microcystis
aeruginosa NIES-843]
gi|166090359|dbj|BAG05067.1| ATP-dependent Clp protease adaptor protein [Microcystis aeruginosa
NIES-843]
Length = 91
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 46 SEVRFSSKVRVP-KLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIG 103
E R ++ +R P YRVLL ND++ ME+V+ L A IM++ H G
Sbjct: 2 IEKRSTATIRKPAPRYRVLLHNDDFNSMEYVVQSLMQTIAGMTQPQAVDIMMEAHTNGTA 61
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E AE + N L +E
Sbjct: 62 LVITCIQEHAEFYCETLKNK------GLTSSIEPD 90
>gi|156544772|ref|XP_001606200.1| PREDICTED: similar to ubiquitin ligase E3 alpha [Nasonia
vitripennis]
Length = 1812
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 7/136 (5%)
Query: 3 LFDDGSMYHRVKRDGILALMSFI-FMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYR 61
L DD + +L + M S + ++ + S+ Y
Sbjct: 195 LPDDMAQRAAATFRAVLKYCYDLLSMEHSPSLPNDLCIKNDEDSVSLLASNDT-----YC 249
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVNQV 120
+L ND + VI L A + + +G ++ E+K
Sbjct: 250 TVLFNDETHTFDQVIITLTRVIKCSQRDAIEYVTNIDREGRAVVKCSGFQHCNELKSEIE 309
Query: 121 MNYSRQHQYPLQCIME 136
SR + PL+ ++E
Sbjct: 310 KFTSRHNSRPLKVLVE 325
>gi|226360564|ref|YP_002778342.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus opacus
B4]
gi|254763822|sp|C1AVW7|CLPS_RHOOB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|226239049|dbj|BAH49397.1| putative ATP-dependent Clp protease adaptor protein ClpS
[Rhodococcus opacus B4]
Length = 112
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
+ V P + ++ +D M +V ++ Q F A
Sbjct: 12 DAMPASPQVTPAESEVVEVDEANDRP--WVTVVWDDPVNLMHYVTYIFQKLFGYSKARAT 69
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+M++VH +G + + E V ++ L M++
Sbjct: 70 ELMMQVHSEGKAVVSSGSRDKVENDVRKLHAA------GLWATMQRD 110
>gi|300859079|ref|YP_003784062.1| ATP-dependent Clp protease adapter protein [Corynebacterium
pseudotuberculosis FRC41]
gi|300686533|gb|ADK29455.1| ATP-dependent Clp protease adapter protein [Corynebacterium
pseudotuberculosis FRC41]
gi|302206782|gb|ADL11124.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
pseudotuberculosis C231]
gi|302331335|gb|ADL21529.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
pseudotuberculosis 1002]
gi|308277027|gb|ADO26926.1| ATP-dependent Clp protease adapter protein ClpS [Corynebacterium
pseudotuberculosis I19]
Length = 126
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
L + + +A + LD + + ++ +D M +V +V
Sbjct: 12 LNELPSVVLAPTMDVVVSSPMATPELDEALSVDVASSENLPWMCIVWDDPVNLMSYVTYV 71
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
Q A +M++VH +G + E V ++ L M+Q
Sbjct: 72 FQTILGYSKRRAIELMMQVHTEGKAVVSSGERDKVEGDVKKLHTA------GLWATMQQ 124
>gi|289427807|ref|ZP_06429516.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes J165]
gi|289158989|gb|EFD07184.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes J165]
gi|313773267|gb|EFS39233.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL074PA1]
gi|313793450|gb|EFS41501.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL110PA1]
gi|313801151|gb|EFS42414.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL110PA2]
gi|313808500|gb|EFS46965.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL087PA2]
gi|313812073|gb|EFS49787.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL083PA1]
gi|313819235|gb|EFS56949.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL046PA2]
gi|313821093|gb|EFS58807.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL036PA1]
gi|313823481|gb|EFS61195.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL036PA2]
gi|313827016|gb|EFS64730.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL063PA1]
gi|313829870|gb|EFS67584.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL007PA1]
gi|313834712|gb|EFS72426.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL056PA1]
gi|313837919|gb|EFS75633.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL086PA1]
gi|314925922|gb|EFS89753.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL036PA3]
gi|314960897|gb|EFT04998.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL002PA2]
gi|314963339|gb|EFT07439.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL082PA1]
gi|314974016|gb|EFT18112.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL053PA1]
gi|314975442|gb|EFT19537.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL045PA1]
gi|314979459|gb|EFT23553.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL072PA2]
gi|314984202|gb|EFT28294.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL005PA1]
gi|314988443|gb|EFT32534.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL005PA2]
gi|314988638|gb|EFT32729.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL005PA3]
gi|315079381|gb|EFT51379.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL053PA2]
gi|315083407|gb|EFT55383.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL027PA2]
gi|315086798|gb|EFT58774.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL002PA3]
gi|315089445|gb|EFT61421.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL072PA1]
gi|315097784|gb|EFT69760.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL038PA1]
gi|327325391|gb|EGE67196.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL096PA2]
gi|327328270|gb|EGE70034.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL096PA3]
gi|327443684|gb|EGE90338.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL043PA1]
gi|327449221|gb|EGE95875.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL043PA2]
gi|327450185|gb|EGE96839.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL013PA2]
gi|327451249|gb|EGE97903.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL092PA1]
gi|328756759|gb|EGF70375.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL020PA1]
gi|328761033|gb|EGF74585.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL099PA1]
Length = 95
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++ +D M++V V +F E A +M++VH++G E E+ V+
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHYRGRATVAEGNKEEMEVAVHA 79
Query: 120 VMNYSRQHQYPLQCIMEQ 137
+ H Y LQ +E+
Sbjct: 80 M------HGYGLQASVEK 91
>gi|87301880|ref|ZP_01084714.1| hypothetical protein WH5701_01105 [Synechococcus sp. WH 5701]
gi|87283448|gb|EAQ75403.1| hypothetical protein WH5701_01105 [Synechococcus sp. WH 5701]
Length = 109
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVP-KLYRVLLVNDNYTPMEFVIHVL-QNFFY 84
M+D+ + + +VR P YRVLL ND ME+V+ L Q
Sbjct: 1 MSDTIRATETPTRSPGGAAVIEKEVQRVRKPSPRYRVLLHNDPVNSMEYVVTTLRQVVPS 60
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML+ H+ G+G V E AE ++ L +E +
Sbjct: 61 LSEQDAIAVMLEAHNTGVGLVIVCDLEPAEFYSE--TLKAK----GLSSTIEPE 108
>gi|125603506|gb|EAZ42831.1| hypothetical protein OsJ_27419 [Oryza sativa Japonica Group]
Length = 160
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIML 95
I + SE ++ YRVLL NDNY E+V+ VL + A IM
Sbjct: 60 IEKVTPGRQSEFDVRKSRKMTPPYRVLLHNDNYNRREYVVQVLMKVIPGMTVDNAVNIMQ 119
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ H G+ + + AE + L+ +E
Sbjct: 120 EAHVNGLSVVIICSQSEAEEHCTSLR------GNGLRSSIEP 155
>gi|21542305|sp|Q8YZQ3|CLPS_ANASP RecName: Full=ATP-dependent Clp protease adapter protein ClpS
Length = 97
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQ 100
+ E + + Y+V+++ND++ + V L + + A + +VH++
Sbjct: 5 PTVTPERSNQTVRKTYPNYKVIVLNDDFNTFQHVAECLVKYIPGMTGDLAWDLTNQVHYE 64
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
G V E AE+ Q+
Sbjct: 65 GQAIVWVGPQEPAELYHQQLRRAG 88
>gi|312139203|ref|YP_004006539.1| ATP-dependent clp protease adaptor protein clps [Rhodococcus equi
103S]
gi|325673491|ref|ZP_08153182.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus equi
ATCC 33707]
gi|311888542|emb|CBH47854.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus equi
103S]
gi|325555512|gb|EGD25183.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus equi
ATCC 33707]
Length = 118
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 47 EVRFSSKVR-VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
E V + + ++ +D M +V ++ Q F A +M++VH +G
Sbjct: 30 EAEIEETVEAQDRPWVTVVWDDPVNLMHYVTYIFQKLFGYSKAKATDLMMQVHKEGKAVV 89
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ + E V ++ L M++
Sbjct: 90 SSGSRDKVENDVRKLHAA------GLWATMQRD 116
>gi|313812343|gb|EFS50057.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL025PA1]
Length = 95
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++ +D M++V V +F E A +M++VH++G E E+ V+
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHNRGRATVAEGNKEEMEVAVHA 79
Query: 120 VMNYSRQHQYPLQCIMEQ 137
+ H Y LQ +E+
Sbjct: 80 M------HGYGLQASVEK 91
>gi|88807954|ref|ZP_01123465.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 7805]
gi|88787993|gb|EAR19149.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 7805]
Length = 104
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 9/108 (8%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETA 90
LD K Y+VLL ND ME+V+ L Q + A
Sbjct: 4 ETPSLTPGGAAVLDKAPERVRK--QSPRYKVLLHNDPVNSMEYVVSTLRQVVPQLSEQDA 61
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ML+ H+ G+G V E AE + L +E
Sbjct: 62 MAVMLEAHNTGVGLVIVCDLEPAEFYCETLK------GKGLTSTLEPD 103
>gi|318042663|ref|ZP_07974619.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
CB0101]
Length = 121
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 38 AEFDNCLDSEVRFSSKV--RVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIM 94
++ + + + + + Y+VLL ND ME+V+ L Q + A +M
Sbjct: 23 PGRESGGGAVMEKAPERVRKPSPRYKVLLHNDPVNTMEYVVGTLRQVVPSLSEQDAIAVM 82
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ H+ G+G V E AE ++ L +E +
Sbjct: 83 LEAHNTGVGLVIVCDIEPAEFYSE--TLKAK----GLTSTIEPE 120
>gi|22298631|ref|NP_681878.1| ATP-dependent Clp protease adaptor [Thermosynechococcus elongatus
BP-1]
gi|37077203|sp|Q8DJY3|CLPS_THEEB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|22294811|dbj|BAC08640.1| tsr1087 [Thermosynechococcus elongatus BP-1]
Length = 94
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGEC 105
+ R + Y+V+++ND++ + V L + A + +VH++G
Sbjct: 7 QERQQVTRKHYPNYKVIVLNDDFNTFQHVAACLMKYIPNMTSDRAWELTNQVHYEGQAIV 66
Query: 106 GVYAYEIAEMKVNQVMNYS 124
V E AE+ Q++
Sbjct: 67 WVGPQEQAELYHEQLLRAG 85
>gi|145296512|ref|YP_001139333.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
glutamicum R]
gi|25009631|sp|Q8NMQ1|CLPS_CORGL RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|158513595|sp|A4QGR5|CLPS_CORGB RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|21325286|dbj|BAB99908.1| Uncharacterized ACR [Corynebacterium glutamicum ATCC 13032]
gi|140846432|dbj|BAF55431.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 100
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
M+ ++ +V S +P + ++ +D M +V +V Q + A
Sbjct: 1 MSSPSAPLATPDVELDVHTLSSENLP--WLCIVWDDPVNLMSYVTYVFQTVLGFSKKRAT 58
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+M++VH +G + E V ++ L M+Q
Sbjct: 59 ELMMQVHTEGKAVVSSGEKDKVEGDVKKLHTA------GLWATMQQ 98
>gi|227548652|ref|ZP_03978701.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079266|gb|EEI17229.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
lipophiloflavum DSM 44291]
Length = 99
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
G LD ++ V + ++ +D M +V +V Q D + A +M+
Sbjct: 2 GSPMATPELDEQLEVDVVVSENLPWMCIVWDDPVNLMSYVSYVFQTVLGYDRKRANELMM 61
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+VH +G + E V ++ L M+Q
Sbjct: 62 QVHTEGKAVVSSGEKDKVEGDVKKLHTA------GLWATMQQ 97
>gi|315080041|gb|EFT52017.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL078PA1]
Length = 93
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++ +D M++V V +F E A +M++VH++G E E+ V+
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHYRGRATVAEGNKEEMEVAVHA 79
Query: 120 VMNYSRQHQYPLQCIMEQ 137
+ H Y LQ +E+
Sbjct: 80 M------HGYGLQASVEK 91
>gi|17227900|ref|NP_484448.1| ATP-dependent Clp protease adaptor [Nostoc sp. PCC 7120]
gi|17129749|dbj|BAB72362.1| all0404 [Nostoc sp. PCC 7120]
Length = 108
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQ 100
+ E + + Y+V+++ND++ + V L + + A + +VH++
Sbjct: 16 PTVTPERSNQTVRKTYPNYKVIVLNDDFNTFQHVAECLVKYIPGMTGDLAWDLTNQVHYE 75
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
G V E AE+ Q+
Sbjct: 76 GQAIVWVGPQEPAELYHQQLRRAG 99
>gi|148243279|ref|YP_001228436.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
RCC307]
gi|147851589|emb|CAK29083.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
RCC307]
Length = 107
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYK 85
M + + E + + + YRVLL ND ME+V+ L +
Sbjct: 1 MTHASETPVSSPGGGAAV-MERQPETVRKPSPRYRVLLHNDPVNSMEYVVTSLREVVPSL 59
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML+ H+ G+G V E AE + L +E +
Sbjct: 60 SEQDAMAVMLEAHNSGVGLVIVCDIEPAEFYCESLKAK------GLTSTIEPE 106
>gi|111018445|ref|YP_701417.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodococcus jostii
RHA1]
gi|122956016|sp|Q0SGS7|CLPS_RHOSR RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|110817975|gb|ABG93259.1| possible ATP-dependent Clp protease adaptor protein ClpS
[Rhodococcus jostii RHA1]
Length = 112
Score = 81.0 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 8/107 (7%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
+ V P + ++ +D M +V ++ Q F A
Sbjct: 12 DAMPASPQVTPAESEVVEIDEANDRP--WVTVVWDDPVNLMHYVTYIFQKLFGYSKAKAT 69
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+M++VH +G + + E V ++ L M+
Sbjct: 70 ELMMQVHSEGKAVVSSGSRDKVENDVRKLHAA------GLWATMQHD 110
>gi|154507592|ref|ZP_02043234.1| hypothetical protein ACTODO_00072 [Actinomyces odontolyticus ATCC
17982]
gi|293189261|ref|ZP_06607984.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces
odontolyticus F0309]
gi|153797226|gb|EDN79646.1| hypothetical protein ACTODO_00072 [Actinomyces odontolyticus ATCC
17982]
gi|292821724|gb|EFF80660.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces
odontolyticus F0309]
Length = 95
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
+R ++ +D M +V V + +F + A+ +M+ VH +G E E V
Sbjct: 19 PRWRAVVWDDPVNLMSYVSAVFRQYFGYSNARAEELMMAVHTRGRATVSTGVRERIEADV 78
Query: 118 NQVMNYSRQHQYPLQCIMEQK 138
+ H Y L+ +E+
Sbjct: 79 MAM------HSYGLRATIEED 93
>gi|16330271|ref|NP_440999.1| ATP-dependent Clp protease adaptor [Synechocystis sp. PCC 6803]
gi|12230854|sp|P73634|CLPS_SYNY3 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|1652760|dbj|BAA17679.1| ssl3379 [Synechocystis sp. PCC 6803]
Length = 98
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 50 FSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVY 108
S+ + ++V+++ND++ + V L + + A + +VH G+ V
Sbjct: 14 TSTVRKTYPNFKVIVLNDDFNTFQHVSDCLLKYIPGMTGDRAWELTNQVHFDGLAIVWVG 73
Query: 109 AYEIAEMKVNQVMN 122
E AE+ Q+
Sbjct: 74 PQEQAELYHQQLRR 87
>gi|255534976|ref|YP_003095347.1| hypothetical protein FIC_00832 [Flavobacteriaceae bacterium
3519-10]
gi|255341172|gb|ACU07285.1| hypothetical protein FIC_00832 [Flavobacteriaceae bacterium
3519-10]
Length = 103
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 30 SRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
+ M K + + + + ++Y+++L ND+ +FVI L E
Sbjct: 3 NSMIKNVRDYESPQREYDEEVALLEKEDEVYKLVLWNDDVNTFDFVIEALVEICGHTLEQ 62
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSR 125
A+ + VH++G + EI +K +R
Sbjct: 63 AEQCTILVHYKGKCTVKTGSLEI--LKPMHEKLLAR 96
>gi|220908775|ref|YP_002484086.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7425]
gi|219865386|gb|ACL45725.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7425]
Length = 93
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIG 103
++ + S+ ++ YRVLL ND+ ME V+ VL + A IM++ H GI
Sbjct: 4 ETIEQRSTVRKLAPRYRVLLHNDDVNSMEHVVEVLLKTVPSLTQPQAVDIMMEAHVNGIA 63
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
A E AE + L +E
Sbjct: 64 LVITCALEHAEFYCESLKLG------GLTSTIEPD 92
>gi|254430350|ref|ZP_05044053.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanobium sp. PCC
7001]
gi|197624803|gb|EDY37362.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanobium sp. PCC
7001]
Length = 113
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 7/118 (5%)
Query: 22 MSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-Q 80
M+ M + + E + Y+VLL ND ME+V+ L Q
Sbjct: 1 MTAAAMTTVPQATQTPSRESGAAVMEKAPERVRKPSPRYKVLLHNDPVNSMEYVVTTLRQ 60
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML+ H+ G+G V E AE ++ L +E
Sbjct: 61 VVPSLSEQDAIAVMLEAHNTGVGLVIVCDLEPAEFYCE--TLKAK----GLTSTLEPD 112
>gi|295131202|ref|YP_003581865.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes SK137]
gi|291376050|gb|ADD99904.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes SK137]
Length = 95
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++ +D M++V V +F E A +M++VH++G E E+ V+
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRECATQLMIQVHYRGRATVAEGNKEEMEVAVHA 79
Query: 120 VMNYSRQHQYPLQCIMEQ 137
+ H Y LQ +E+
Sbjct: 80 M------HGYGLQASVEK 91
>gi|75909055|ref|YP_323351.1| ATP-dependent Clp protease adaptor [Anabaena variabilis ATCC 29413]
gi|75702780|gb|ABA22456.1| ATP-dependent Clp protease adaptor protein ClpS [Anabaena
variabilis ATCC 29413]
Length = 108
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQ 100
+ E + + Y+V+++ND++ + V L + + A + +VH++
Sbjct: 16 PTVTPERSNQTVRKSYPNYKVIVLNDDFNTFQHVAECLVKYIPGMTGDLAWDLTNQVHYE 75
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
G V E AE+ Q+
Sbjct: 76 GQAIVWVGPQEPAELYHQQLRRAG 99
>gi|254423912|ref|ZP_05037630.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
PCC 7335]
gi|196191401|gb|EDX86365.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
PCC 7335]
Length = 97
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGEC 105
+ S+ ++ YRVLL ND++ ME+V+ L + A IM++ H+ GIG
Sbjct: 10 KPSVSTVRKIAPRYRVLLHNDDFNSMEYVVEALIETVPSLTAPQAIDIMMQTHNTGIGLV 69
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
V E AE + L +E +
Sbjct: 70 IVCEMEHAEFYCEGLK------GKGLTSTIEPE 96
>gi|16331021|ref|NP_441749.1| ATP-dependent Clp protease adaptor protein ClpS [Synechocystis sp.
PCC 6803]
gi|1653516|dbj|BAA18429.1| ssr2723 [Synechocystis sp. PCC 6803]
Length = 96
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ YRVLL ND++ ME V+ L Q A IM++ H G+ E A
Sbjct: 17 KHAPRYRVLLHNDDFNSMEHVVQTLIQTVAGMTQPQAVDIMMEAHFNGMSLVITCELEHA 76
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQK 138
E + + + L +E
Sbjct: 77 EFYCETLRS------HGLSSTIEPD 95
>gi|242009898|ref|XP_002425719.1| ubiquitin-protein ligase E3 component N-recognin-2, putative
[Pediculus humanus corporis]
gi|212509620|gb|EEB12981.1| ubiquitin-protein ligase E3 component N-recognin-2, putative
[Pediculus humanus corporis]
Length = 1786
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EM 115
P +Y +L ND E VI+ L A + + +G +++ E+
Sbjct: 246 PDVYCTVLYNDEIHTFEQVINSLVKIVKCSQRDATEYVTNIDREGRAVVKCTSFQQCQEL 305
Query: 116 KVNQVMNYSRQHQYPLQCIM 135
K + S+ +PL+ +
Sbjct: 306 KTDIERFTSKHGGHPLKVEV 325
>gi|94272507|ref|ZP_01292136.1| ATP-dependent Clp protease adaptor protein ClpS [delta
proteobacterium MLMS-1]
gi|93450106|gb|EAT01450.1| ATP-dependent Clp protease adaptor protein ClpS [delta
proteobacterium MLMS-1]
Length = 58
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 81 NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
F+ D A IM+ VH +G+G GVY + AE KV V N +R+H+YPL+C +EQ+
Sbjct: 1 MVFHHDQAAAHRIMMNVHREGVGVAGVYPRDSAETKVAMVHNLARKHEYPLKCSLEQE 58
>gi|115476544|ref|NP_001061868.1| Os08g0432500 [Oryza sativa Japonica Group]
gi|37805936|dbj|BAC99353.1| unknown protein [Oryza sativa Japonica Group]
gi|42409470|dbj|BAD09826.1| unknown protein [Oryza sativa Japonica Group]
gi|113623837|dbj|BAF23782.1| Os08g0432500 [Oryza sativa Japonica Group]
gi|125561637|gb|EAZ07085.1| hypothetical protein OsI_29332 [Oryza sativa Indica Group]
gi|215741119|dbj|BAG97614.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 162
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIML 95
I + SE ++ YRVLL NDNY E+V+ VL + A IM
Sbjct: 62 IEKVTPGRQSEFDVRKSRKMTPPYRVLLHNDNYNRREYVVQVLMKVIPGMTVDNAVNIMQ 121
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ H G+ + + AE + L+ +E
Sbjct: 122 EAHVNGLSVVIICSQSEAEEHCTSLR------GNGLRSSIEP 157
>gi|182414611|ref|YP_001819677.1| ATP-dependent Clp protease adaptor protein ClpS [Opitutus terrae
PB90-1]
gi|177841825|gb|ACB76077.1| ATP-dependent Clp protease adaptor protein ClpS [Opitutus terrae
PB90-1]
Length = 107
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
E + E + ++ + + ++RV+++ND M +V+ V + F D TA+ ML+VH
Sbjct: 11 ESNPHSSPESQGATALALEGIWRVVVLNDPVNLMSYVVMVFKKVFGFDDATARRHMLEVH 70
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
QG E AE + + + L ++E
Sbjct: 71 EQGRSIVWSGLREKAEAYAFTLQQW-----H-LTAVLEPD 104
>gi|19553715|ref|NP_601717.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
glutamicum ATCC 13032]
gi|62391355|ref|YP_226757.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
glutamicum ATCC 13032]
gi|41326696|emb|CAF21178.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC
13032]
Length = 124
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 28 ADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ M+ ++ +V S +P + ++ +D M +V +V Q
Sbjct: 21 SSLNMSSPSAPLATPDVELDVHTLSSENLP--WLCIVWDDPVNLMSYVTYVFQTVLGFSK 78
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ A +M++VH +G + E V ++ L M+Q
Sbjct: 79 KRATELMMQVHTEGKAVVSSGEKDKVEGDVKKLHTA------GLWATMQQ 122
>gi|315606163|ref|ZP_07881191.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces sp.
oral taxon 180 str. F0310]
gi|315312121|gb|EFU60210.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces sp.
oral taxon 180 str. F0310]
Length = 95
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
+R ++ +D M +V V + +F A+ +M++VH +G E E V
Sbjct: 19 PRWRAVVWDDPVNLMTYVTAVFREYFGYSTARAEELMMRVHTRGRATVSTGVRERIEADV 78
Query: 118 NQVMNYSRQHQYPLQCIMEQK 138
+ H Y L+ +E+
Sbjct: 79 MAM------HSYGLRATLEED 93
>gi|213965891|ref|ZP_03394082.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
amycolatum SK46]
gi|213951469|gb|EEB62860.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
amycolatum SK46]
Length = 97
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ ++ ++ +D M +V +V Q F D + A +M+ VH +G +
Sbjct: 18 TESNRPWQCIVWDDQVNSMSYVTYVFQMLFGMDRKKAHALMMTVHTEGKAIVSSGERDKV 77
Query: 114 EMKVNQVMNYSRQHQYPLQCIMEQ 137
E V + H+ L MEQ
Sbjct: 78 EADVK------KLHKAGLWATMEQ 95
>gi|37077250|sp|Q8FMT9|CLPS_COREF RecName: Full=ATP-dependent Clp protease adapter protein ClpS
Length = 101
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIM 94
+ D E+ + + ++ +D M +V +V Q + A +M
Sbjct: 3 SSPSAPTAEPDVEMDVHTVSSENLPWLCIVWDDPVNLMSYVTYVFQTVLGYSRKRANELM 62
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
++VH +G + E V ++ L M+Q
Sbjct: 63 MQVHTEGKAVVSSGEKDKVEGDVKKLHVA------GLWATMQQ 99
>gi|227504006|ref|ZP_03934055.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
striatum ATCC 6940]
gi|227199400|gb|EEI79448.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
striatum ATCC 6940]
Length = 142
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
G LD + + ++ +D M +V +V Q D + A +M+
Sbjct: 45 GSPMATPELDEAIEVDVASSENLPWMCIVWDDPVNLMSYVSYVFQTVLGYDKKRANELMM 104
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+VH +G + E V ++ L M+Q
Sbjct: 105 QVHTEGKAAVSTGERDKVEADVKKLQIA------GLWATMQQ 140
>gi|57335897|emb|CAH25350.1| hypothetical protein [Guillardia theta]
Length = 233
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHET 89
M K+ +D R S K K Y+VLL ND+ ++VI L +
Sbjct: 134 EMEKERQGGRTAVMD---RPSDKTDPGKKYKVLLFNDDKNTRQYVIDTLMKYIPGMTADK 190
Query: 90 AKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
AK I + H+ G+ GV+ YE+AE + V+ + L+ ++ +
Sbjct: 191 AKEITVAAHNTGMAIVGVWMYEMAEAYSD-VLRSA-----GLRSDIDPE 233
>gi|118619139|ref|YP_907471.1| hypothetical protein MUL_3931 [Mycobacterium ulcerans Agy99]
gi|118571249|gb|ABL06000.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 70
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 64 LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
+ +D M +V +V Q F A +ML+VH++G + E E+ V
Sbjct: 1 MWDDPVNLMTYVTYVFQKLFGYSEPHATKLMLQVHNEGRAVVSAGSREAMEVDV------ 54
Query: 124 SRQHQYPLQCIMEQK 138
S+ H L M+Q
Sbjct: 55 SKLHAAGLWATMQQD 69
>gi|78211862|ref|YP_380641.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
CC9605]
gi|78196321|gb|ABB34086.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 106
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YK 85
M + + LD K Y+VLL ND ME+V+ LQ
Sbjct: 1 MVMAVESPSQKPGGAAVLDKAPEKVRK--RSPRYKVLLHNDPVNSMEYVVATLQQVVPQL 58
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ +ML+ H+ G+G V E AE + + L +E +
Sbjct: 59 SEQDCMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSK------GLTSSIEPE 105
>gi|158337023|ref|YP_001518198.1| ATP-dependent Clp protease adaptor protein ClpS [Acaryochloris
marina MBIC11017]
gi|158307264|gb|ABW28881.1| ATP-dependent Clp protease adaptor protein ClpS [Acaryochloris
marina MBIC11017]
Length = 98
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIG 103
+ + + + ++V++VND+ E V L + + A + ++H +G
Sbjct: 9 EEKQAQKTVRKPYPNFKVIVVNDDVNTFEHVAKTLMTYIPHMTSDKAWELTNQIHFEGQA 68
Query: 104 ECGVYAYEIAEMKVNQVMNYS 124
V E AE+ Q+
Sbjct: 69 IVWVGPQEQAELYHMQLQRAG 89
>gi|313835868|gb|EFS73582.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL037PA2]
gi|314927132|gb|EFS90963.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL044PA1]
gi|314970774|gb|EFT14872.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL037PA3]
gi|328906038|gb|EGG25813.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
sp. P08]
Length = 95
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 63 LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
++ +D M++V V +F E A +M++VH++G + E E+ V+ +
Sbjct: 23 VVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHNEGRATVAEGSKEEMEIAVHAM-- 80
Query: 123 YSRQHQYPLQCIMEQ 137
H Y LQ +E+
Sbjct: 81 ----HGYGLQASVEK 91
>gi|227494816|ref|ZP_03925132.1| ATP-dependent Clp protease adaptor protein [Actinomyces coleocanis
DSM 15436]
gi|226831268|gb|EEH63651.1| ATP-dependent Clp protease adaptor protein [Actinomyces coleocanis
DSM 15436]
Length = 102
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++ ND M++V V Q F A +ML+VH G E E V
Sbjct: 25 WATVVWNDPINLMDYVQAVFQRHFGFSQARAHELMLQVHLTGRALVSKGPKERMEADVLA 84
Query: 120 VMNYSRQHQYPLQCIMEQ 137
+ H Y L+ +E
Sbjct: 85 M------HGYGLRSTLEP 96
>gi|68535563|ref|YP_250268.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
jeikeium K411]
gi|123651422|sp|Q4JX07|CLPS_CORJK RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|68263162|emb|CAI36650.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
Length = 101
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+ + + +D M +V +V Q + A +M++VH +G
Sbjct: 18 ETLTEPNLPWMCICWDDPVNLMSYVTYVFQTVLGYSRKRATELMMQVHTEGKAVVSSGER 77
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ E V ++ L M++
Sbjct: 78 DKVEGDVKKLQTA------GLWATMQR 98
>gi|300780576|ref|ZP_07090431.1| ATP-dependent Clp protease adapter protein ClpS [Corynebacterium
genitalium ATCC 33030]
gi|300533562|gb|EFK54622.1| ATP-dependent Clp protease adapter protein ClpS [Corynebacterium
genitalium ATCC 33030]
Length = 112
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 14/124 (11%)
Query: 14 KRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPME 73
+ + M S M + D ++ V + + + ++ +D
Sbjct: 1 MTGVNPEIRPGVRMG-SPMATPDL---DEQIEVNVDTAENL----PWMCIVWDDPVNLQS 52
Query: 74 FVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQC 133
+V +V Q + A+ +M++VH +G + E V ++ L
Sbjct: 53 YVTYVFQTVLGYGRKRAQELMMQVHTEGKAVVSSGEKDKVEGDVKKLHTA------GLWA 106
Query: 134 IMEQ 137
M+Q
Sbjct: 107 TMQQ 110
>gi|260579690|ref|ZP_05847551.1| ATP-dependent Clp protease adapter protein ClpS [Corynebacterium
jeikeium ATCC 43734]
gi|258602182|gb|EEW15498.1| ATP-dependent Clp protease adapter protein ClpS [Corynebacterium
jeikeium ATCC 43734]
Length = 110
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+ + + +D M +V +V Q + A +M++VH +G
Sbjct: 27 ETLTEPNLPWMCICWDDPVNLMSYVTYVFQTVLGYSRKRATELMMQVHTEGKAVVSSGER 86
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ E V ++ L M++
Sbjct: 87 DKVEGDVKKLQTA------GLWATMQR 107
>gi|37520315|ref|NP_923692.1| ATP-dependent Clp protease adaptor protein ClpS [Gloeobacter
violaceus PCC 7421]
gi|39930962|sp|Q7NML9|CLPS_GLOVI RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|35211308|dbj|BAC88687.1| gsl0746 [Gloeobacter violaceus PCC 7421]
Length = 93
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 48 VRFSSKVRVP-KLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGEC 105
+ S R P LY+VLL ND++TPM +VI VL A+ IML+ H+ G+
Sbjct: 6 LERKSVQRKPMPLYKVLLHNDDHTPMNYVIEVLMKTIPKMQPSKARKIMLEAHNGGVAVV 65
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
V A E AE + + L E
Sbjct: 66 IVCALEHAEFYSESLNR------HNLTSTYEPD 92
>gi|298245523|ref|ZP_06969329.1| ATP-dependent Clp protease adaptor protein ClpS [Ktedonobacter
racemifer DSM 44963]
gi|297553004|gb|EFH86869.1| ATP-dependent Clp protease adaptor protein ClpS [Ktedonobacter
racemifer DSM 44963]
Length = 102
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 58 KLYRVLLVNDNYTPMEFVIH-VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
LY+V+L ND+Y M V+ +L+ + A IML H G V +E+AE
Sbjct: 27 PLYKVILFNDDYNDMLHVVAALLETVNTLTMQEATHIMLTAHLNGNAIVIVCPHELAEHY 86
Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
+++ Y+ L +E +
Sbjct: 87 QERLLGYA------LTVTIEPE 102
>gi|116072120|ref|ZP_01469388.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
BL107]
gi|116065743|gb|EAU71501.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
BL107]
Length = 104
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDH 87
+ LD K Y+VLL ND ME+V+ L Q
Sbjct: 1 MAEETPTRSPGGAAVLDKAPERVRK--RSPRYKVLLHNDPVNSMEYVMATLRQVVPQLSE 58
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML+ H+ GIG V E AE + + L +E +
Sbjct: 59 QDAMAVMLEAHNTGIGLVIVCDIEPAEFYCETLKSK------GLTSTIEPE 103
>gi|226493842|ref|NP_001148322.1| ATP-dependent Clp protease adaptor protein ClpS containing protein
[Zea mays]
gi|194701232|gb|ACF84700.1| unknown [Zea mays]
gi|195617588|gb|ACG30624.1| ATP-dependent Clp protease adaptor protein ClpS containing protein
[Zea mays]
Length = 160
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLK 96
+ SE ++ +RV+L NDN+ E+V+ VL + A IM +
Sbjct: 61 EKITPGRQSEFDVKKSRKMTPPFRVILHNDNHNRREYVVQVLMKVIPGMTVDNALNIMQE 120
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H G+ V + AE + L+ +E
Sbjct: 121 AHVNGLSVVIVCSQSEAEEHCTSLR------GNGLRSSIEP 155
>gi|33862944|ref|NP_894504.1| ATP-dependent Clp protease adaptor [Prochlorococcus marinus str.
MIT 9313]
gi|33634861|emb|CAE20847.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 98
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLKVHH 99
+ + + + RV+++ND+ + V+ L+ E A + ++
Sbjct: 5 TPGTTPLLERAKQTQRYPQARVIVLNDDVNTFQHVVDCLRRIIPGMSEERAWNLAHQIDG 64
Query: 100 QGIGECGVYAYEIAEMKVNQV 120
QG E E AE+ Q+
Sbjct: 65 QGSAEVWCGPLEQAELYHQQL 85
>gi|124023254|ref|YP_001017561.1| ATP-dependent Clp protease adaptor [Prochlorococcus marinus str.
MIT 9303]
gi|123963540|gb|ABM78296.1| Uncharacterized conserved protein [Prochlorococcus marinus str. MIT
9303]
Length = 98
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLKVHH 99
+ + + + RV+++ND+ + V+ L+ E A + ++
Sbjct: 5 TPGSTPLLERAKQTQRYPQARVIVLNDDVNTFQHVVDCLRRIIPGMSEERAWNLAHQIDG 64
Query: 100 QGIGECGVYAYEIAEMKVNQV 120
QG E E AE+ Q+
Sbjct: 65 QGSAEVWCGPLEQAELYHQQL 85
>gi|313828232|gb|EFS65946.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL063PA2]
gi|315110454|gb|EFT82430.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL030PA2]
Length = 95
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++ +D M++V V +F E A +M++VH+QG + E E+ V+
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHNQGRVTVAEGSKEEMEVAVHA 79
Query: 120 VMNYSRQHQYPLQCIMEQ 137
+ H Y LQ +E+
Sbjct: 80 M------HGYGLQASVEK 91
>gi|22297755|ref|NP_681002.1| ATP-dependent Clp protease adaptor protein ClpS
[Thermosynechococcus elongatus BP-1]
gi|22293932|dbj|BAC07764.1| tll0211 [Thermosynechococcus elongatus BP-1]
Length = 99
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 42 NCLDSEVRFSSKV--RVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVH 98
+ + ++ YRVLL NDN ME+V+ VL + A IM++ H
Sbjct: 5 PTMSVQTIEKPATVRKLAPRYRVLLHNDNVNSMEYVVEVLLKTVPSLTQPQAVDIMMEAH 64
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G+ A E AE + + + L +E
Sbjct: 65 LTGVALVITCALEHAEFYC-EGLKMA-----GLTSTIEP 97
>gi|256824919|ref|YP_003148879.1| hypothetical protein Ksed_10700 [Kytococcus sedentarius DSM 20547]
gi|256688312|gb|ACV06114.1| uncharacterized conserved protein [Kytococcus sedentarius DSM
20547]
Length = 86
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE--MK 116
+ L+ ND M +V VL + F TA+ +M+ +H +G + E E K
Sbjct: 12 PWYTLVWNDPVNLMSYVTFVLMDHFGYPQRTAEAMMMDIHTKGRCVVSTGSREAMEVDTK 71
Query: 117 VNQVMNYSRQHQYPLQCIMEQK 138
Q +Y L + Q
Sbjct: 72 AMQ--------EYGLWATLGQD 85
>gi|319441876|ref|ZP_07991032.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
variabile DSM 44702]
Length = 101
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+ + + +D M +V +V Q + A +M++VH +G
Sbjct: 18 DTLTEADLPWLCICWDDPVNLMSYVTYVFQTVLGYSRKRATALMMEVHTEGKAIVSSGDR 77
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ E V ++ L M++
Sbjct: 78 DKVEADVKKLQTA------GLWATMQR 98
>gi|195652021|gb|ACG45478.1| ATP-dependent Clp protease adaptor protein ClpS containing protein
[Zea mays]
Length = 160
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLK 96
+ SE ++ +RV+L NDN+ E+V+ VL + A IM +
Sbjct: 61 EKITPGRQSEFDVKKSRKMTPPFRVILHNDNHNRREYVVQVLMKVIPGMTVDNALSIMQE 120
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H G+ V + AE + L+ +E
Sbjct: 121 AHVNGLSVVIVCSQSEAEEHCTSLR------GNGLRSSIEP 155
>gi|224001838|ref|XP_002290591.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974013|gb|EED92343.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 147
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Query: 14 KRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPME 73
R L+ + + MA I + D + E SK + V L ND E
Sbjct: 30 SRSTALS-KTNLHMAAVAPAP--IKKSDIDTNYETDADSKSAKDPGWLVRLYNDPMNKRE 86
Query: 74 FVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
FV L D A +M+ H QG+ G Y E+AE+ ++
Sbjct: 87 FVARCLMEICGLDDGAAYTVMMHAHQQGLSVIGKYHREVAELYKMKLQM 135
>gi|317968680|ref|ZP_07970070.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
CB0205]
Length = 106
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 38 AEFDNCLDSEVRFSSKV--RVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIM 94
++ + + + + + Y+VLL ND ME+V+ L Q + A +M
Sbjct: 8 PGRESGGAAVMEKAPERVRKPSPRYKVLLHNDPVNTMEYVVSTLRQVVPSLSEQDAIAVM 67
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
++ H+ G+G V E AE ++ L +E +
Sbjct: 68 MEAHNTGVGLVIVCDIEPAEFYSE--TLKAK----GLSSTIEPE 105
>gi|254412762|ref|ZP_05026535.1| ATP-dependent Clp protease adaptor protein ClpS [Microcoleus
chthonoplastes PCC 7420]
gi|196180497|gb|EDX75488.1| ATP-dependent Clp protease adaptor protein ClpS [Microcoleus
chthonoplastes PCC 7420]
Length = 108
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 48 VRFSSKVRVP-KLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGEC 105
+ R P Y+V++++D++ + V L + + A + +VH +G
Sbjct: 21 EKSRQVTRKPYPNYKVIVLDDDFNTFQHVHDCLVKYIPGMSSDYAWKLTNQVHFEGQAIV 80
Query: 106 GVYAYEIAEMKVNQV 120
V E AE+ Q+
Sbjct: 81 WVGPQEQAELYHQQL 95
>gi|33862055|ref|NP_893616.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33634273|emb|CAE19958.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 118
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYK 85
M++ + K E +N E + + Y+VLL ND ME+V + L +
Sbjct: 14 MSNIKFEK---GENNNAAVLEKKTAPLKNKSPKYKVLLHNDPVNSMEYVTNALREVVPQL 70
Query: 86 DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A IML+ H+ G+G V E AE + + + +E++
Sbjct: 71 SEQDAISIMLEAHNTGVGLVIVCDLEPAEFYSESLKSK------GISSSIEKE 117
>gi|326385034|ref|ZP_08206706.1| ATP-dependent Clp protease adaptor protein ClpS [Gordonia
neofelifaecis NRRL B-59395]
gi|326196248|gb|EGD53450.1| ATP-dependent Clp protease adaptor protein ClpS [Gordonia
neofelifaecis NRRL B-59395]
Length = 85
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+V + + L+ +D M +V +V Q F E AK +M++VH +G
Sbjct: 3 EPEVTHDRPWVTLVWDDPVNLMNYVAYVFQKVFGYSEEKAKALMMQVHTEGKAVVSSGDR 62
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E V ++ L M+
Sbjct: 63 VKMEADVRKLHAA------GLWATMQHD 84
>gi|108803856|ref|YP_643793.1| ATP-dependent Clp protease adaptor protein ClpS [Rubrobacter
xylanophilus DSM 9941]
gi|108765099|gb|ABG03981.1| ATP-dependent Clp protease adaptor protein ClpS [Rubrobacter
xylanophilus DSM 9941]
Length = 107
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAK 91
+ + YRV+L ND++TPM+ V+ L A
Sbjct: 6 TRDIRCSAATKTAPARKTRRAPSREPRYRVILHNDDWTPMDHVVAALMKVVPRLSLRRAV 65
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
IML+ H +G E+AE+ + L +E
Sbjct: 66 SIMLEAHTKGQAVVTRCHRELAELYREGLKAE------GLISTIEPD 106
>gi|78185599|ref|YP_378033.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
CC9902]
gi|123580669|sp|Q3AUR5|CLPS_SYNS9 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|78169893|gb|ABB26990.1| conserved hypothetical protein [Synechococcus sp. CC9902]
Length = 104
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 29 DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDH 87
+ LD K Y+VLL ND ME+V+ L Q
Sbjct: 1 MAEETPTRSPGGAAVLDKAPERVRK--RSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSE 58
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ A +ML+ H+ G+G V E AE + + L +E +
Sbjct: 59 QDAMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSK------GLTSSIEPE 103
>gi|311741206|ref|ZP_07715030.1| ATP-dependent Clp protease adapter protein ClpS [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303376|gb|EFQ79455.1| ATP-dependent Clp protease adapter protein ClpS [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 108
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
LD E+ + ++ +D M +V +V Q D + A +M++V
Sbjct: 13 PMATPELDEELDVDVATSENLPWMCIVWDDPVNLMSYVSYVFQTVLGYDKKRANELMMQV 72
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H +G + E V ++ L M+Q
Sbjct: 73 HTEGKAAVSSGERDKIEADVKKLQIA------GLWATMQQ 106
>gi|255324319|ref|ZP_05365440.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
tuberculostearicum SK141]
gi|255298649|gb|EET77945.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
tuberculostearicum SK141]
Length = 114
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 13 VKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPM 72
V+ +G+ A + M+ LD E+ + ++ +D M
Sbjct: 2 VRLEGMKAQFPVVRMSS--------PMATPELDEELDVDVATSENLPWMCIVWDDPVNLM 53
Query: 73 EFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQ 132
+V +V Q D + A +M++VH +G + E V ++ L
Sbjct: 54 SYVSYVFQTVLGYDKKRANELMMQVHTEGKAAVSSGERDKIEADVKKLQIA------GLW 107
Query: 133 CIMEQ 137
M+Q
Sbjct: 108 ATMQQ 112
>gi|223948869|gb|ACN28518.1| unknown [Zea mays]
Length = 119
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLK 96
+ SE ++ +RV+L NDN+ E+V+ VL + A IM +
Sbjct: 20 EKITPGRQSEFDVKKSRKMTPPFRVILHNDNHNRREYVVQVLMKVIPGMTVDNALNIMQE 79
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H G+ V + AE + L+ +E
Sbjct: 80 AHVNGLSVVIVCSQSEAEEHCTSLR------GNGLRSSIEP 114
>gi|314956858|gb|EFT01012.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL027PA1]
Length = 95
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++ +D M++V V +F E A +M++VH+Q + E E+ V+
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHNQDRATVAEGSKEEMEVAVHA 79
Query: 120 VMNYSRQHQYPLQCIMEQ 137
+ H Y LQ +E+
Sbjct: 80 M------HGYGLQASVEK 91
>gi|225166273|ref|ZP_03727970.1| ATP-dependent Clp protease adaptor protein ClpS [Opitutaceae
bacterium TAV2]
gi|224799486|gb|EEG18018.1| ATP-dependent Clp protease adaptor protein ClpS [Opitutaceae
bacterium TAV2]
Length = 110
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 6/112 (5%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKD 86
MAD N + + V+++ND M +++ VL+ D
Sbjct: 1 MADDTHNHPFHPPASPQENPAAGTHLHPSPDGPWHVVIINDPVNLMSYLVLVLRKVLGID 60
Query: 87 HETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+TA+ M+ VH +G E AE + + + L +E
Sbjct: 61 EDTARKHMMTVHEEGRSIVWTGLREKAEHYAFSLQQW-----H-LNARIEPD 106
>gi|148239546|ref|YP_001224933.1| ATP-dependent Clp protease adaptor [Synechococcus sp. WH 7803]
gi|147848085|emb|CAK23636.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 7803]
Length = 98
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIML 95
+ + + + + + RV+++ND++ E V+ L + E A +
Sbjct: 1 MTSSSPGVSTVLERDRQAQRYPQARVIVLNDDFNTFEHVVESLCRIIPGMNTEKAWSLAH 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQV 120
++ +G E E AE+ Q+
Sbjct: 61 RIDGEGAAEVWCGPLEQAELYHQQL 85
>gi|227833926|ref|YP_002835633.1| hypothetical protein cauri_2102 [Corynebacterium aurimucosum ATCC
700975]
gi|254763814|sp|C3PIP1|CLPS_CORA7 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|227454942|gb|ACP33695.1| hypothetical protein cauri_2102 [Corynebacterium aurimucosum ATCC
700975]
Length = 111
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
LD + + ++ +D M +V +V Q D + A +M++V
Sbjct: 16 PMATPELDEAIEVDVATSENLPWMCIVWDDPVNLMSYVSYVFQTVLGYDKKRANELMMQV 75
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H +G + E V ++ L M+Q
Sbjct: 76 HTEGKAAVSSGERDKVEADVKKLQVA------GLWATMQQ 109
>gi|56751052|ref|YP_171753.1| ATP-dependent Clp protease adaptor [Synechococcus elongatus PCC
6301]
gi|56686011|dbj|BAD79233.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 136
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ +RV++++D+ + V L + + A + +VH++G E A
Sbjct: 57 QPYPHFRVIVLDDDVNTFQHVAECLLKYIPGMTGDRAWDLTNQVHYEGAATVWSGPQEQA 116
Query: 114 EMKVNQVMN 122
E+ Q+
Sbjct: 117 ELYHEQLRR 125
>gi|81299287|ref|YP_399495.1| ATP-dependent Clp protease adaptor [Synechococcus elongatus PCC
7942]
gi|81168168|gb|ABB56508.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 136
Score = 77.2 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ +RV++++D+ + V L + + A + +VH++G E A
Sbjct: 57 QPYPHFRVIVLDDDVNTFQHVAECLLKYIPGMTGDRAWDLTNQVHYEGAATVWSGPQEQA 116
Query: 114 EMKVNQVMN 122
E+ Q+
Sbjct: 117 ELYHEQLRR 125
>gi|259508030|ref|ZP_05750930.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
efficiens YS-314]
gi|259164371|gb|EEW48925.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
efficiens YS-314]
Length = 86
Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+ ++ +D M +V +V Q + A +M++VH +G + E V
Sbjct: 12 PWLCIVWDDPVNLMSYVTYVFQTVLGYSRKRANELMMQVHTEGKAVVSSGEKDKVEGDVK 71
Query: 119 QVMNYSRQHQYPLQCIMEQ 137
++ L M+Q
Sbjct: 72 KLHVA------GLWATMQQ 84
>gi|227502992|ref|ZP_03933041.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
accolens ATCC 49725]
gi|306836777|ref|ZP_07469737.1| ATP-dependent Clp protease adapter protein ClpS [Corynebacterium
accolens ATCC 49726]
gi|227076053|gb|EEI14016.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
accolens ATCC 49725]
gi|304567323|gb|EFM42928.1| ATP-dependent Clp protease adapter protein ClpS [Corynebacterium
accolens ATCC 49726]
Length = 108
Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 6/110 (5%)
Query: 28 ADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ LD + + ++ +D M +V +V Q D
Sbjct: 3 PQHPEVRMSSPMATPDLDEGIEVDVAASENLPWMCIVWDDPVNLMSYVSYVFQTVLGYDK 62
Query: 88 ETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ A +M++VH +G + E V ++ L M+Q
Sbjct: 63 KRANELMMQVHTEGKAAVSSGEKDKVEADVKKLQIA------GLWATMQQ 106
>gi|262184929|ref|ZP_06044350.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
aurimucosum ATCC 700975]
Length = 95
Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
LD + + ++ +D M +V +V Q D + A +M++VH +
Sbjct: 3 TPELDEAIEVDVATSENLPWMCIVWDDPVNLMSYVSYVFQTVLGYDKKRANELMMQVHTE 62
Query: 101 GIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
G + E V ++ L M+Q
Sbjct: 63 GKAAVSSGERDKVEADVKKLQVA------GLWATMQQ 93
>gi|307105846|gb|EFN54094.1| hypothetical protein CHLNCDRAFT_31972 [Chlorella variabilis]
Length = 166
Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLKVHHQGIGECGVYAYEIAEM 115
P YRVLL NDNY E+V+ VL + A IM + H G+ A + AE+
Sbjct: 79 PPSYRVLLHNDNYNRREYVVQVLMKVVEGTTVDDAVNIMQEAHINGLAMVTQCAQDKAEL 138
Query: 116 KVNQVMNYSRQHQYPLQCIMEQ 137
+ R + L +E
Sbjct: 139 YCESL----RLNG--LIATIEP 154
>gi|297571673|ref|YP_003697447.1| ATP-dependent Clp protease adaptor protein ClpS [Arcanobacterium
haemolyticum DSM 20595]
gi|296932020|gb|ADH92828.1| ATP-dependent Clp protease adaptor protein ClpS [Arcanobacterium
haemolyticum DSM 20595]
Length = 100
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
SE V + ++ +D M +V V +++F A+ ML VH +G
Sbjct: 13 SETDAQESVFSDAAWLTVVHDDPVNLMAYVQWVFESYFGMTSTVARERMLAVHRKGRAVL 72
Query: 106 GVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E E V + H Y L+ +EQ+
Sbjct: 73 AAGGREAMERDVQAM------HTYGLRATIEQE 99
>gi|88808607|ref|ZP_01124117.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 7805]
gi|88787595|gb|EAR18752.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 7805]
Length = 111
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIML 95
+ + + + + RV+++ND+ E V+ L + + A +
Sbjct: 14 MTSSSPGVSTVLERDRQALRYPQARVIVLNDDVNTFEHVVESLCRIIPGMNTDKAWALAR 73
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQV 120
+V +G E E AE+ Q+
Sbjct: 74 RVDGEGSAEVWCGPLEQAELYHQQL 98
>gi|86606056|ref|YP_474819.1| ATP-dependent Clp protease adaptor [Synechococcus sp. JA-3-3Ab]
gi|86554598|gb|ABC99556.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
JA-3-3Ab]
Length = 101
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 51 SSKVRVP-KLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVY 108
++VR P ++V++++D++ + V L + A+ + ++V +G V
Sbjct: 17 RTRVRQPYPHFKVIVLDDDFNTFQHVTECLLKYIPGMTLPLARQLTVQVDAEGQAVVWVG 76
Query: 109 AYEIAEMKVNQVMN 122
E AE+ Q++
Sbjct: 77 PQEQAELYHQQLLR 90
>gi|326334474|ref|ZP_08200685.1| ATP-dependent Clp protease adaptor protein ClpS [Capnocytophaga sp.
oral taxon 338 str. F0234]
gi|325693243|gb|EGD35171.1| ATP-dependent Clp protease adaptor protein ClpS [Capnocytophaga sp.
oral taxon 338 str. F0234]
Length = 96
Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ + E + + LY+++L ND+Y ++VI +L +E A+ +
Sbjct: 1 MPQTQPTPQQESQEELLTQYADLYQIILYNDDYNTFDYVIDLLMEVCEHTYEQAEQCAMI 60
Query: 97 VHHQGIGECGVYAYE 111
VH+ G YE
Sbjct: 61 VHYSGKCPVKEGTYE 75
>gi|86610000|ref|YP_478762.1| ATP-dependent Clp protease adaptor [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558542|gb|ABD03499.1| ATP-dependent Clp protease adaptor protein clpS [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 101
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 51 SSKVRVP-KLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVY 108
++VR P ++V++++D++ + V L + A+ + ++V +G V
Sbjct: 17 RTQVRQPYPHFKVIVLDDDFNTFQHVTECLLKYIPGMTLPLARQLTVQVDAEGQAVVWVG 76
Query: 109 AYEIAEMKVNQVMN 122
E AE+ Q++
Sbjct: 77 PQEQAELYHQQLLR 90
>gi|149192136|ref|ZP_01870358.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio shilonii
AK1]
gi|148834039|gb|EDL51054.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio shilonii
AK1]
Length = 45
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
ML VH++G CG Y E+AE KV QV YSR++++PL C ME+
Sbjct: 1 MLAVHYEGKAVCGTYTSEVAETKVAQVTMYSRENEHPLLCTMEK 44
>gi|123969234|ref|YP_001010092.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. AS9601]
gi|123199344|gb|ABM70985.1| Uncharacterized conserved protein [Prochlorococcus marinus str.
AS9601]
Length = 105
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLK 96
+ +N E + + Y+VLL ND ME+V L + + A IML+
Sbjct: 9 SGSNNSAVIEKKPAELKNKSPKYKVLLHNDPVNSMEYVTISLREVVPQLSEQDAIAIMLE 68
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H+ GIG V E AE + + + +E++
Sbjct: 69 AHNTGIGLVIVCDLEPAEFYSESLKSK------GISSSIEKE 104
>gi|123966912|ref|YP_001011993.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. MIT 9515]
gi|229889822|sp|A2BYM5|CLPS_PROM5 RecName: Full=ATP-dependent Clp protease adapter protein ClpS
gi|123201278|gb|ABM72886.1| Uncharacterized conserved protein [Prochlorococcus marinus str. MIT
9515]
Length = 105
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIM 94
+ +N E + ++ Y+VLL ND ME++ L + + A IM
Sbjct: 7 EKGDNNNAAVLEKKTAALKNKSPKYKVLLHNDPVNSMEYITIALREVVPQLSEQDAIAIM 66
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQV 120
L+ H+ G+G V E AE +
Sbjct: 67 LEAHNNGVGLVIVCDLEPAEFYSESL 92
>gi|78212974|ref|YP_381753.1| ATP-dependent Clp protease adaptor [Synechococcus sp. CC9605]
gi|78197433|gb|ABB35198.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 98
Score = 75.2 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIML 95
+ + + + RV++++D+ + V+ L+ + A +
Sbjct: 1 MTSSSPGSSAVLERQGTTQRYPQARVIVLDDDVNTFQHVVDCLRKIIPGMSEDNAWNLAN 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVM 121
++ QG E E AE+ Q+
Sbjct: 61 RIDGQGSAEVWCGPLEQAELYHQQLQ 86
>gi|296118689|ref|ZP_06837265.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
ammoniagenes DSM 20306]
gi|295968178|gb|EFG81427.1| ATP-dependent Clp protease adaptor protein ClpS [Corynebacterium
ammoniagenes DSM 20306]
Length = 95
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKV 97
+ D +D V + + ++ +D M +V +V Q D + A +M++V
Sbjct: 4 PKLDEAVDVSVASEENL----PWMCIVWDDPVNLMSYVSYVFQTVLGYDKKRANELMMQV 59
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H +G + E V ++ L M+Q
Sbjct: 60 HTEGKAAVTSGERDKVEADVKKLQVA------GLWATMQQ 93
>gi|254526054|ref|ZP_05138106.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. MIT 9202]
gi|221537478|gb|EEE39931.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. MIT 9202]
Length = 105
Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 37 IAEFDNCLDSEVRFSSKVR-VPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIM 94
N + ++++ Y+VLL ND ME+V L + + A IM
Sbjct: 7 EQSVSNGSAVIEKKPAELKNKSPKYKVLLHNDPVNSMEYVTISLREVVPQLSEQDAIAIM 66
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
L+ H+ GIG + E AE + + + +E++
Sbjct: 67 LEAHNTGIGLVIICDLEPAEFYSESLKSK------GISSSIEKE 104
>gi|116074794|ref|ZP_01472055.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
RS9916]
gi|116068016|gb|EAU73769.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
RS9916]
Length = 98
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIML 95
+ + + S + RV+++ND+ + V+ L E A +
Sbjct: 1 MTGSSGAQSTLLERSRTTQGYPEARVIVLNDDVNTFQHVVDCLCKIIPGMGTERAWDLAH 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVM 121
+V QG E E AE+ Q+
Sbjct: 61 QVDGQGSAEVWCGPLEQAELYHQQLT 86
>gi|78779975|ref|YP_398087.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. MIT 9312]
gi|78713474|gb|ABB50651.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9312]
Length = 105
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLK 96
+ +N E + + YRVLL ND ME+V L + + A IML+
Sbjct: 9 SVSNNSAVIEKKPAELKNKSPKYRVLLHNDPVNSMEYVTISLREVVPQLSEQDAIAIMLE 68
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
H+ G+G V E AE + + + +E++
Sbjct: 69 AHNTGVGLVIVCDLEPAEFYSESLKSK------GISSSIEKE 104
>gi|260434286|ref|ZP_05788256.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 8109]
gi|260412160|gb|EEX05456.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 8109]
Length = 98
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIML 95
+ + + + RV++++D+ + V+ L+ + A +
Sbjct: 1 MTSSSPGSSAVLERQGTTQRYPQARVIVLDDDVNTFQHVVDCLRKIIPGMSEDNAWNLAN 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMN 122
++ G E E AE+ Q+ +
Sbjct: 61 RIDGHGAAEVWCGPLEQAELYHQQLQS 87
>gi|219113493|ref|XP_002186330.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583180|gb|ACI65800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 161
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 9/119 (7%)
Query: 13 VKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKL---------YRVL 63
+ M+ + + ++ + + ++V P + V
Sbjct: 30 SFGSSVSRSTVAARMSPATIERESVKVGAPAVLDRPAEKTRVDEPVKERKGMGHEAWEVR 89
Query: 64 LVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+ ND E V L A M++ H GI G + YE+AEM + + N
Sbjct: 90 IYNDGLNTREHVARSLVQVTGMSEMEAYQTMMQAHQNGIAVVGRWVYEVAEMYHDALQN 148
>gi|157414100|ref|YP_001484966.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. MIT 9215]
gi|157388675|gb|ABV51380.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9215]
Length = 105
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGE 104
E + + Y+VLL ND ME+V L + + A IML+ H+ GIG
Sbjct: 17 IEKKPAELKNKSPKYKVLLHNDPVNSMEYVTISLREVVPQLSEQDAIAIMLEAHNTGIGL 76
Query: 105 CGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
+ E AE + + + +E++
Sbjct: 77 VIICDLEPAEFYSESLKSK------GISSSIEKE 104
>gi|113955042|ref|YP_730629.1| ATP-dependent Clp protease adaptor [Synechococcus sp. CC9311]
gi|113882393|gb|ABI47351.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
CC9311]
Length = 98
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIML 95
+ S ++ RV+++ND+ E V+ L + + A +
Sbjct: 1 MTMATPGTASVLQPERTTLRYPNARVIVLNDDVNTFEHVVECLCKIIPGMNSDKAWTLAH 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQV 120
++ +G E E AE+ Q+
Sbjct: 61 QIDGEGAAEVWAGPLEPAELYHQQL 85
>gi|33865838|ref|NP_897397.1| ATP-dependent Clp protease adaptor [Synechococcus sp. WH 8102]
gi|33633008|emb|CAE07819.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 98
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLKVHHQGIGECG 106
+ + + RV++++D+ + V+ L+ E A + ++ QG E
Sbjct: 12 LERQTITQRYPQARVIVLDDDVNTFQHVVDCLRKIIPGMSEEKAWSLANRIDGQGSAEVW 71
Query: 107 VYAYEIAEMKVNQV 120
E AE+ Q+
Sbjct: 72 CGPLEQAELYHQQL 85
>gi|148242507|ref|YP_001227664.1| ATP-dependent Clp protease adaptor [Synechococcus sp. RCC307]
gi|147850817|emb|CAK28311.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
RCC307]
Length = 98
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCI 93
+ + + ++V+++ND + V+ L + D + A +
Sbjct: 3 SSAPSRQTAGSTLLERAP----YPNFKVVVLNDEVNTFQHVVDCLVKYIPAMDPDRAWSL 58
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQV 120
++ G V E AE+ Q+
Sbjct: 59 AQQIDSDGQAVVWVGPQEQAELYHMQL 85
>gi|108804875|ref|YP_644812.1| ATP-dependent Clp protease adaptor protein ClpS [Rubrobacter
xylanophilus DSM 9941]
gi|108766118|gb|ABG05000.1| ATP-dependent Clp protease adaptor protein ClpS [Rubrobacter
xylanophilus DSM 9941]
Length = 106
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
+ R K Y V+L++D+ E+VI +L+ F + +V G
Sbjct: 8 KRRSREKSGGLPPYNVVLLDDDDHSYEYVIFMLRKLFGYPVRKGYELAREVDTTGRAVVA 67
Query: 107 VYAYEIAEMKVNQVMNYS 124
E AE+K +Q+ ++
Sbjct: 68 TTHLEEAELKRDQIQSFG 85
>gi|313205912|ref|YP_004045089.1| ATP-dependent clp protease adaptor protein clps [Riemerella
anatipestifer DSM 15868]
gi|312445228|gb|ADQ81583.1| ATP-dependent Clp protease adaptor protein ClpS [Riemerella
anatipestifer DSM 15868]
Length = 95
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
I +N + V S++ + ++++L ND++ +FVI L E A+
Sbjct: 5 NIPNKENEEEVSVLSSTEAK----HKLVLHNDDFNTFDFVIESLMEVCAHTLEQAEQCTF 60
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVM 121
VH++G E+ E +++
Sbjct: 61 LVHYKGKCTVKTGNLELIEPMHKKLL 86
>gi|228472184|ref|ZP_04056950.1| ATP-dependent Clp protease adaptor protein ClpS [Capnocytophaga
gingivalis ATCC 33624]
gi|228276387|gb|EEK15111.1| ATP-dependent Clp protease adaptor protein ClpS [Capnocytophaga
gingivalis ATCC 33624]
Length = 96
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 35/88 (39%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
+ + E + + Y+++L ND+Y ++VI +L +E A+ +
Sbjct: 1 MPQTQPTPQKESQEELLTQQADNYQIMLYNDDYNTFDYVIELLIEICDHTYEQAEQCAVL 60
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYS 124
VH G +YE + +++
Sbjct: 61 VHFSGKCPVKEGSYEDLLPRCSKLTQAG 88
>gi|315022224|gb|EFT35252.1| hypothetical protein RAYM_05465 [Riemerella anatipestifer RA-YM]
gi|325336648|gb|ADZ12922.1| ClpS [Riemerella anatipestifer RA-GD]
Length = 97
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
+M + I +N + V S++ + ++++L ND++ +FVI L E A
Sbjct: 2 KMVFQNIPNKENEEEVSVLSSTEAK----HKLVLHNDDFNTFDFVIESLMEVCAHTLEQA 57
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
+ VH++G E+ E +++
Sbjct: 58 EQCTFLVHYKGKCTVKTGNLELIEPMHKKLL 88
>gi|284928874|ref|YP_003421396.1| hypothetical protein UCYN_02930 [cyanobacterium UCYN-A]
gi|284809333|gb|ADB95038.1| uncharacterized conserved protein [cyanobacterium UCYN-A]
Length = 106
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIML 95
I E + + + +++++ND++ + V + L + A +
Sbjct: 9 IPETSISTNIKHSAVIDYKPYPNCKIIVLNDDFNTFDHVANCLIRYIPAMTKSHAWELTQ 68
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMN 122
K+H G + E AE+ Q+
Sbjct: 69 KIHFNGFATVWMGPLEQAELYHQQLRR 95
>gi|183222314|ref|YP_001840310.1| putative signal peptide [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189912362|ref|YP_001963917.1| ATP-dependent Clp protease adaptor protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167777038|gb|ABZ95339.1| ATP-dependent Clp protease adaptor protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780736|gb|ABZ99034.1| Conserved hypothetical protein; putative signal peptide [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 108
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E + ++V+L +D++ E+VI +L + E A ++V +
Sbjct: 14 ETEIKP-TKHDGPWKVVLWDDDHHTYEYVIEMLMDVCQMTWEKAFQHAVEVDTRKKTIVF 72
Query: 107 VYAYEIAEMKVNQVMNYS 124
E AE +++NY
Sbjct: 73 SGELEHAEFIHERILNYG 90
>gi|120434799|ref|YP_860485.1| ATP-dependent Clp protease adaptor protein [Gramella forsetii
KT0803]
gi|117576949|emb|CAL65418.1| ATP-dependent Clp protease adaptor protein [Gramella forsetii
KT0803]
Length = 91
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 33/84 (39%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ K + K ++L ND+Y + VI L E A+ + VH++
Sbjct: 2 STKEEVLEEVEIKTKDKKENEIVLYNDDYNTFDHVIDTLIYACEHTPEQAEQCSILVHYK 61
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
G Y+ + + +++++
Sbjct: 62 GKCTVKTGPYKELKPRCSKLLDAG 85
>gi|268317544|ref|YP_003291263.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodothermus
marinus DSM 4252]
gi|262335078|gb|ACY48875.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodothermus
marinus DSM 4252]
Length = 104
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
+D E +++ P +RV+L ND+ + VI L A+ + KVH
Sbjct: 14 GPAPEVDVEDTEETRLDAP--WRVILYNDDIHTFDEVIFQLMKATGCSLPEAEALTWKVH 71
Query: 99 HQGIGECGVYAYEIA 113
+G +E
Sbjct: 72 TEGKAAVYEGLFEEC 86
>gi|163787701|ref|ZP_02182148.1| hypothetical protein FBALC1_04142 [Flavobacteriales bacterium
ALC-1]
gi|159877589|gb|EDP71646.1| hypothetical protein FBALC1_04142 [Flavobacteriales bacterium
ALC-1]
Length = 91
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
++L ND+ + VI L E A+ + VH++G +Y+ E + + +
Sbjct: 22 EIVLFNDDVNTFDHVIDTLIYACEHTPEQAEQCSIIVHYKGKCTVKTGSYDDLEPRCSML 81
Query: 121 MNYS 124
++
Sbjct: 82 LDAG 85
>gi|314967388|gb|EFT11487.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL082PA2]
gi|314982107|gb|EFT26200.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL110PA3]
gi|315090346|gb|EFT62322.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL110PA4]
gi|315093629|gb|EFT65605.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL060PA1]
gi|327325469|gb|EGE67273.1| putative ATP-dependent Clp protease adaptor protein ClpS
[Propionibacterium acnes HL103PA1]
Length = 198
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+ ++ +D M++V V +F E A +M++VH+QG + +
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHNQGRATVAEGSKD 71
>gi|50843142|ref|YP_056369.1| hypothetical protein PPA1680 [Propionibacterium acnes KPA171202]
gi|50840744|gb|AAT83411.1| conserved protein (DUF174) [Propionibacterium acnes KPA171202]
gi|315106213|gb|EFT78189.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL030PA1]
Length = 198
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+ ++ +D M++V V +F E A +M++VH+QG + +
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHNQGRATVAEGSKD 71
>gi|254421403|ref|ZP_05035121.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
PCC 7335]
gi|196188892|gb|EDX83856.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
PCC 7335]
Length = 71
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 64 LVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
++ND++ E V+ L + + A + ++H++G E AE+ +Q++
Sbjct: 1 MLNDDFNTFEHVVKTLTTYIPGMNSDQAWELADQIHNEGQAIVWTGPLEQAELYHSQLIR 60
Query: 123 YS 124
Sbjct: 61 AG 62
>gi|86132928|ref|ZP_01051519.1| ATP-dependent Clp protease adaptor protein ClpS [Dokdonia
donghaensis MED134]
gi|85816634|gb|EAQ37821.1| ATP-dependent Clp protease adaptor protein ClpS [Dokdonia
donghaensis MED134]
Length = 91
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 30/84 (35%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
N + + ++L ND+ + VI+ L + A L VH++
Sbjct: 2 SNQEKYQEELDILTEESPAHEIILYNDDVNTFDHVINTLIYACDHEENQAHQCALLVHYK 61
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
G Y+ E + ++++
Sbjct: 62 GKCSVKSGDYKDLEPRCSKLLQAG 85
>gi|162449014|ref|YP_001611381.1| hypothetical protein sce0744 [Sorangium cellulosum 'So ce 56']
gi|161159596|emb|CAN90901.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
cellulosum 'So ce 56']
Length = 285
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 33/75 (44%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
V+ ND+ T ME V +L + F D A ML VH G G Y + A + +
Sbjct: 179 EVVFWNDDVTKMEAVQRLLVDCFGMDEVEATHFMLTVHFAGSAAAGPYRPDTAAALLARA 238
Query: 121 MNYSRQHQYPLQCIM 135
+R+ P++ +
Sbjct: 239 TQVARERGMPIRITL 253
>gi|116070493|ref|ZP_01467762.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
BL107]
gi|116065898|gb|EAU71655.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
BL107]
Length = 98
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLKVHHQGIGECG 106
+ + +V++++D+ + V+ L+ D + A + ++ +G E
Sbjct: 12 LERQKTTQRYPEAKVIVLDDDVNTFQHVVDCLRKIIPGMDEDKAWGLAHRIDGEGSAEVW 71
Query: 107 VYAYEIAEMKVNQVM 121
E AE+ Q+
Sbjct: 72 RGPLEQAELYHQQLQ 86
>gi|87302745|ref|ZP_01085556.1| hypothetical protein WH5701_13370 [Synechococcus sp. WH 5701]
gi|87282628|gb|EAQ74586.1| hypothetical protein WH5701_13370 [Synechococcus sp. WH 5701]
Length = 96
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ RV++++D+ + V++ L + + A + ++ QG E A
Sbjct: 17 QRYPHLRVVVLDDDVNTFQHVVNCLVRYLPGMGPDRAWELAHQIDSQGSAVVWSGPQEQA 76
Query: 114 EMKVNQVMN 122
E+ Q+
Sbjct: 77 ELYHQQLSQ 85
>gi|314924274|gb|EFS88105.1| ATP-dependent Clp protease adaptor protein ClpS [Propionibacterium
acnes HL001PA1]
Length = 198
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+ ++ +D M++V V +F E A +M++VH+QG + +
Sbjct: 20 WTTVVWDDPVNLMDYVTMVFMRYFGYPRERATQLMIQVHNQGRATVVEGSKD 71
>gi|78184628|ref|YP_377063.1| ATP-dependent Clp protease adaptor [Synechococcus sp. CC9902]
gi|78168922|gb|ABB26019.1| conserved hypothetical protein [Synechococcus sp. CC9902]
Length = 98
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLKVHHQGIGECG 106
+ + +V++++D+ + V+ L+ D E A + ++ QG E
Sbjct: 12 LERQKTTQRYPEAKVIVLDDDVNTFQHVVDCLRKIIPGMDEEKAWGLAHRIDGQGSAEVW 71
Query: 107 VYAYEIAEMKVNQVM 121
E AE+ Q+
Sbjct: 72 RGPLEQAELYHLQLQ 86
>gi|300777810|ref|ZP_07087668.1| ATP-dependent Clp protease adaptor protein ClpS [Chryseobacterium
gleum ATCC 35910]
gi|300503320|gb|EFK34460.1| ATP-dependent Clp protease adaptor protein ClpS [Chryseobacterium
gleum ATCC 35910]
Length = 101
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
Y+++L ND+ ++VI L E A+ + VH++G + ++
Sbjct: 31 YKLVLHNDDIHTFDYVIDCLIEICKHTLEQAEQCTILVHYKGKCTVKTGSMDV 83
>gi|183221780|ref|YP_001839776.1| putative ATP-dependent Clp protease adaptor protein C [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
gi|189911854|ref|YP_001963409.1| ATP-dependent Clp protease adaptor protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167776530|gb|ABZ94831.1| ATP-dependent Clp protease adaptor protein [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780202|gb|ABZ98500.1| Putative ATP-dependent Clp protease adaptor protein C [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 94
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 28/76 (36%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
E S K Y V+L ND+ +V L +K AK I ++ H G C
Sbjct: 10 EEETSLKTDSVYSYFVILFNDSIHEFAYVEDCLMKLCFKTKRDAKKIAIEAHTNGKAICF 69
Query: 107 VYAYEIAEMKVNQVMN 122
+ E E + N
Sbjct: 70 QGSMEECETVAENMTN 85
>gi|91080927|ref|XP_974039.1| PREDICTED: similar to ubiquitin ligase E3 alpha [Tribolium
castaneum]
gi|270005384|gb|EFA01832.1| hypothetical protein TcasGA2_TC007434 [Tribolium castaneum]
Length = 1757
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVN 118
Y +L ND E VI L + TA + + +G +++ E+K
Sbjct: 226 YCTILYNDEIHTFEQVISTLTRVLKCNQRTAIEFVTNIDREGRAVVKCSSFQHCTELKQE 285
Query: 119 QVMNYSRQHQYPLQCIM 135
SR PL+ ++
Sbjct: 286 IEKYTSRHGNKPLKVLV 302
>gi|255036663|ref|YP_003087284.1| ATP-dependent Clp protease adaptor protein ClpS [Dyadobacter
fermentans DSM 18053]
gi|254949419|gb|ACT94119.1| ATP-dependent Clp protease adaptor protein ClpS [Dyadobacter
fermentans DSM 18053]
Length = 91
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 30/69 (43%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
D+E+ + + ++++ ND+ ++VI L E A+ + +H++G
Sbjct: 5 TDTELEILEETVATDIKKLVIYNDDVNTFDWVIDTLVEVCGHTSEQAEQCTIIIHYKGKC 64
Query: 104 ECGVYAYEI 112
++E
Sbjct: 65 SVKEGSFEE 73
>gi|86141235|ref|ZP_01059781.1| hypothetical protein MED217_04437 [Leeuwenhoekiella blandensis
MED217]
gi|85831794|gb|EAQ50249.1| hypothetical protein MED217_04437 [Leeuwenhoekiella blandensis
MED217]
Length = 91
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
+++ ND+ + VI L A+ L VH++G +YE E + + +
Sbjct: 22 EIVVYNDDVNTFDHVIDTLIEVCDHTPIQAEQCSLIVHYKGKCTVKTGSYEYLEPRCSAL 81
Query: 121 MNYS 124
++
Sbjct: 82 LDAG 85
>gi|254495168|ref|ZP_05108092.1| ATP-dependent Clp protease adaptor protein ClpS [Polaribacter sp.
MED152]
gi|85819519|gb|EAQ40676.1| ATP-dependent Clp protease adaptor protein ClpS [Polaribacter sp.
MED152]
Length = 91
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 32/84 (38%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ + + ++L ND+ +FVI L N E A+ + VH++
Sbjct: 2 STKEKIQEEVDVLEKEVFQHEIVLHNDDVNTFDFVIESLINVCDHTLEQAEQCTILVHYK 61
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
G ++ E + ++++
Sbjct: 62 GKCTVKSGEFKDLEPRCSKLLQLG 85
>gi|213962229|ref|ZP_03390493.1| ATP-dependent Clp protease adaptor protein ClpS [Capnocytophaga
sputigena Capno]
gi|213955235|gb|EEB66553.1| ATP-dependent Clp protease adaptor protein ClpS [Capnocytophaga
sputigena Capno]
Length = 95
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
++L ND+ + VI L + E A+ + VH +G + +YE E +
Sbjct: 25 HLILYNDDVNTFDHVIDTLVEVCHHTFEQAEQCAIIVHFKGKCDVKTGSYEYLEPLCTAL 84
Query: 121 MNYSRQHQYPLQCIME 136
++ L +E
Sbjct: 85 LDA------GLSAQIE 94
>gi|295132850|ref|YP_003583526.1| ATP-dependent Clp protease adaptor protein [Zunongwangia profunda
SM-A87]
gi|294980865|gb|ADF51330.1| ATP-dependent Clp protease adaptor protein [Zunongwangia profunda
SM-A87]
Length = 89
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ + +KV ++L ND+Y + VI L E A+ + VH++
Sbjct: 2 STQEEVLEKVETKVDKEN--EIVLYNDDYNTFDHVIETLIYACDHTPEQAEQCSILVHYK 59
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
G A+ + + +++++
Sbjct: 60 GKCTVKTGAFADLKPRCSKLLDAG 83
>gi|87124406|ref|ZP_01080255.1| hypothetical protein RS9917_12370 [Synechococcus sp. RS9917]
gi|86167978|gb|EAQ69236.1| hypothetical protein RS9917_12370 [Synechococcus sp. RS9917]
Length = 98
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLKVHHQ 100
+ + ++ RV++++D+ + V+ L E A + ++ +
Sbjct: 6 TGTATVLDRATSRSDYPQARVIVLDDDVNTFQHVVDCLCRIIPGMGSERAWDLAHRIDSE 65
Query: 101 GIGECGVYAYEIAEMKVNQV 120
G + E AE+ Q+
Sbjct: 66 GAADVWSGPLEQAELYHQQL 85
>gi|159467236|ref|XP_001691804.1| clp protease adaptor protein [Chlamydomonas reinhardtii]
gi|158279150|gb|EDP04912.1| clp protease adaptor protein [Chlamydomonas reinhardtii]
Length = 147
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIM 94
S V S K P +Y+VLL NDNY E+V+ VL + A M
Sbjct: 50 DAPTTTQQPASGVERSQK--RPPIYKVLLHNDNYNKREYVVKVLLKVVEQITVDDAVTCM 107
Query: 95 LKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
+ H G+ + AE + R + L +E
Sbjct: 108 QEAHETGVALVVACPQDNAERYCEGL----RLNG--LTSTIEP 144
>gi|157120908|ref|XP_001659789.1| ubiquitin ligase E3 alpha [Aedes aegypti]
gi|108874767|gb|EAT38992.1| ubiquitin ligase E3 alpha [Aedes aegypti]
Length = 2550
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
V +Y +L ND E VI L + + A + + +G ++E
Sbjct: 1002 DVDDEDIYCTILYNDETHTFEQVIQTLTSIVKCTQKEAIEYVTSIDREGRAVVKCASFET 1061
Query: 113 A-------EMKVNQVMNYSRQHQYPLQCIM 135
E KV + ++ PL+ +
Sbjct: 1062 CKKLKEDVENKVIRSSMTAKAS--PLKVTV 1089
>gi|225850997|ref|YP_002731231.1| ATP-dependent Clp protease adaptor protein ClpS [Persephonella
marina EX-H1]
gi|225645917|gb|ACO04103.1| ATP-dependent Clp protease adaptor protein ClpS [Persephonella
marina EX-H1]
Length = 90
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ EV V+ +V++ ND++ E VI+ + D ETA+ + ++H +G
Sbjct: 2 GIGFEVEVEKDVQTYIPAKVVVYNDDWHTFEEVIYQIMKAIKCDLETAQNLTWEIHTKGK 61
Query: 103 GECGVYAYEIAEMKVNQVMN 122
+E A +KV ++
Sbjct: 62 AVVYEGDFEEA-LKVANILE 80
>gi|326672781|ref|XP_001921590.3| PREDICTED: e3 ubiquitin-protein ligase UBR2 [Danio rerio]
Length = 1756
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 45 DSEVRFSSKVRVP---KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
D E + P +Y +L ND E VI+ LQ + A V G
Sbjct: 210 DKEDELPEGLEPPARGDMYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAVSFATTVDRDG 269
Query: 102 IGECGVYAYEIAEM-KVNQVMNYSRQHQYPLQCIM 135
++ E K V N SRQ + PL+ +
Sbjct: 270 RKSVRFGDFQFCEQAKSVIVRNTSRQTK-PLRVQV 303
>gi|149277214|ref|ZP_01883356.1| hypothetical protein PBAL39_10001 [Pedobacter sp. BAL39]
gi|149232091|gb|EDM37468.1| hypothetical protein PBAL39_10001 [Pedobacter sp. BAL39]
Length = 115
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
+M+ + E + + ++R++L ND+ + VIH + + A
Sbjct: 22 KMSTETKEETFTLEEILTSLKT------IHRLILWNDDVNTFDHVIHCMMKYLDYSESQA 75
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+ I +VH++G ++ E+ +
Sbjct: 76 EKIAWEVHNKGKCAVLEGSFTEMEVYRKILQQ 107
>gi|110637456|ref|YP_677663.1| hypothetical protein CHU_1046 [Cytophaga hutchinsonii ATCC 33406]
gi|110280137|gb|ABG58323.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 99
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ +V +V+ + +++ ND+ E VI VL + E A+ L +H++G
Sbjct: 12 QQEEDVALMEEVQTSDMNDLVVYNDDVNTFEHVIQVLMSVCGHSPEQAEQCTLLIHYKGK 71
Query: 103 GECGVYAY 110
+ +
Sbjct: 72 CTVKMGSL 79
>gi|332170809|gb|AEE20064.1| ATP-dependent Clp protease adaptor protein ClpS [Krokinobacter
diaphorus 4H-3-7-5]
Length = 91
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 29/84 (34%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
N + + ++L ND + VI+ L + A L VH++
Sbjct: 2 SNQEKYQEDVDVLTEETPSHEIILYNDEVNTFDHVINTLIYACDHEENQAHQCALLVHYK 61
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
G Y+ E + ++++
Sbjct: 62 GKCSVKSGEYKDLEPRCSKLLQAG 85
>gi|325955115|ref|YP_004238775.1| ATP-dependent Clp protease adaptor protein ClpS [Weeksella virosa
DSM 16922]
gi|323437733|gb|ADX68197.1| ATP-dependent Clp protease adaptor protein ClpS [Weeksella virosa
DSM 16922]
Length = 97
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 31/80 (38%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
E + ++++ ND+ ++VI L + E A+ L +H+ G
Sbjct: 10 ETSPETDIEVLTEEKEQNQIIVHNDDVNTFDWVIESLIDVCDHTPEQAEQCTLIIHYNGK 69
Query: 103 GECGVYAYEIAEMKVNQVMN 122
+ Y + + +++N
Sbjct: 70 CDVLTGEYTYLKPRCEELLN 89
>gi|254819164|ref|ZP_05224165.1| ATP-dependent Clp protease adaptor protein ClpS [Mycobacterium
intracellulare ATCC 13950]
Length = 62
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 72 MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
M +V +V Q F A +ML+VH++G + E E V S+ H L
Sbjct: 1 MTYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVVSAGSRESMEADV------SKLHAAGL 54
Query: 132 QCIMEQK 138
++Q
Sbjct: 55 WATLQQD 61
>gi|318041538|ref|ZP_07973494.1| ATP-dependent Clp protease adaptor [Synechococcus sp. CB0101]
Length = 93
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 47 EVRFSSKVRVP-KLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGE 104
VR +V P RV++++D++ + V+ VL + + A + ++ QG
Sbjct: 5 AVRDKQRVDAPYPTGRVIVLDDDHNTFQHVVEVLVRYIPAMTSDRAWELAHQIDGQGSAL 64
Query: 105 CGVYAYEIAEMKVNQV 120
E AE+ Q+
Sbjct: 65 VWSGPLEQAELYHQQL 80
>gi|150025727|ref|YP_001296553.1| hypothetical protein FP1679 [Flavobacterium psychrophilum JIP02/86]
gi|149772268|emb|CAL43746.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 91
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
++L ND+ + VI+ L + + A+ L VH++G ++ E+K
Sbjct: 22 EIVLFNDDVNTFDHVINTLIRVCHHEELQAEQCALLVHYKGKCVVKTGTFD--ELK 75
>gi|225013083|ref|ZP_03703498.1| ATP-dependent Clp protease adaptor protein ClpS [Flavobacteria
bacterium MS024-2A]
gi|225002811|gb|EEG40792.1| ATP-dependent Clp protease adaptor protein ClpS [Flavobacteria
bacterium MS024-2A]
Length = 94
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 25/75 (33%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
++E E + + ++L ND+ E VI L + A+
Sbjct: 1 MSEAQPFNKPEEEVEVSTLTDREHEIILYNDDVNTFEHVIECLVAICDHNALQAEQCAYL 60
Query: 97 VHHQGIGECGVYAYE 111
VH+ G + E
Sbjct: 61 VHYSGKCAVKSGSLE 75
>gi|307187669|gb|EFN72641.1| E3 ubiquitin-protein ligase UBR2 [Camponotus floridanus]
Length = 1784
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVN 118
Y +L ND + + VI++LQ + A + V +G + E++V+
Sbjct: 253 YCTVLFNDEHHTFDQVINMLQRVIKCSQKEAVEFVTNVDREGRAVVKCSVFRHCNELRVD 312
Query: 119 QVMNYSRQHQYPLQCIM 135
R PL+ ++
Sbjct: 313 IERFTYRHSNRPLKVLV 329
>gi|312129998|ref|YP_003997338.1| ATP-dependent clp protease adaptor protein clps [Leadbetterella
byssophila DSM 17132]
gi|311906544|gb|ADQ16985.1| ATP-dependent Clp protease adaptor protein ClpS [Leadbetterella
byssophila DSM 17132]
Length = 95
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
KLY +++ ND+ + VI L + +E A+ L +H +G YE
Sbjct: 21 KLYSLVVFNDDVNTFDHVIETLVEYCDHTYEQAEQCTLIIHFKGKCAVKNGDYEE 75
>gi|299471643|emb|CBN76865.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 225
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGE 104
EV ++ + +RV+L ND ++V + K + A + ++ H G
Sbjct: 99 VEVDNKEELDKEQWWRVILHNDEIHTFDYVTQSITKVVKKLTMKKAYEVTMETHKSGKAT 158
Query: 105 CGVYAYEIAEMKVNQVMN 122
+E Q+
Sbjct: 159 VTQAWKSKSESYCLQLQQ 176
>gi|289569343|ref|ZP_06449570.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T17]
gi|289543097|gb|EFD46745.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T17]
Length = 73
Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
+ + ++ +D M +V +V Q F A +ML+VH++G
Sbjct: 24 TDRAWVTIVWDDPVNLMSYVTYVFQKLFGYSEPHATKLMLQVHNEGKAVV 73
>gi|325287228|ref|YP_004263018.1| ATP-dependent Clp protease adaptor protein ClpS [Cellulophaga
lytica DSM 7489]
gi|324322682|gb|ADY30147.1| ATP-dependent Clp protease adaptor protein ClpS [Cellulophaga
lytica DSM 7489]
Length = 91
Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 27/64 (42%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
++L ND+ + VI L + A+ VH++G +Y+ E + +++
Sbjct: 22 EIVLFNDDVNTFDHVIDTLVDACDHTPIQAEQCAFLVHYKGKCTVKTGSYKDLEPRCSKL 81
Query: 121 MNYS 124
+
Sbjct: 82 LQAG 85
>gi|149370136|ref|ZP_01889987.1| hypothetical protein SCB49_03644 [unidentified eubacterium SCB49]
gi|149356627|gb|EDM45183.1| hypothetical protein SCB49_03644 [unidentified eubacterium SCB49]
Length = 91
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 25/63 (39%)
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
++L ND+ + VI L A+ VH++G +YE E + + ++
Sbjct: 23 IVLFNDDVNTFDDVIDALVYACDHTPLQAEQCATLVHYKGKCTVKTGSYEDLEPRCSMLL 82
Query: 122 NYS 124
Sbjct: 83 EAG 85
>gi|78779324|ref|YP_397436.1| ATP-dependent Clp protease adaptor [Prochlorococcus marinus str.
MIT 9312]
gi|78712823|gb|ABB50000.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9312]
Length = 95
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 50 FSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVY 108
SKV+ P+ RV++++D++ + V + L A + +KV + G E
Sbjct: 12 KKSKVKYPEA-RVIVLDDSFNTFQHVANCLLIIIPGMSENRAWDLTIKVDNTGSAEVWRG 70
Query: 109 AYEIAEMKVNQV 120
E AE+ Q+
Sbjct: 71 NLEQAELYHEQL 82
>gi|146301250|ref|YP_001195841.1| ATP-dependent Clp protease adaptor protein ClpS [Flavobacterium
johnsoniae UW101]
gi|146155668|gb|ABQ06522.1| ATP-dependent Clp protease adaptor protein ClpS [Flavobacterium
johnsoniae UW101]
Length = 91
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 44 LDSEVRFSSKVRVPKLYR--VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+VR + + ++ +++ ND+ + VI L E A+ L VH+ G
Sbjct: 3 TKEKVREKVREKEAAVFNNEIIMYNDDVNTFDHVIDTLMRVCDHTAEQAEQCSLIVHYNG 62
Query: 102 IGECGVYAYEIAEMKVNQVMNYS 124
E + + Q++
Sbjct: 63 KCTVKTGPIEKLKPQCTQLLEAG 85
>gi|305664962|ref|YP_003861249.1| ribosomal protein L11 methyltransferase [Maribacter sp. HTCC2170]
gi|88707792|gb|EAR00032.1| ribosomal protein L11 methyltransferase [Maribacter sp. HTCC2170]
Length = 91
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 25/64 (39%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
++L ND + VI L E A+ L VH+ G Y+ E + +++
Sbjct: 22 EIVLFNDEVNTFDHVIDTLIAACDHTPEQAEQCSLIVHYNGKCTVKTGEYKDLEPRCSKL 81
Query: 121 MNYS 124
+
Sbjct: 82 LQAG 85
>gi|88803812|ref|ZP_01119335.1| hypothetical protein PI23P_06261 [Polaribacter irgensii 23-P]
gi|88780340|gb|EAR11522.1| hypothetical protein PI23P_06261 [Polaribacter irgensii 23-P]
Length = 91
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 32/84 (38%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+ + + ++L ND+ + VI+ L + E A+ + VH++
Sbjct: 2 STKEKIQEEVDVLEKEIFQHEIVLHNDDVNTFDHVINSLMDVCEHTLEQAEQCAMLVHYK 61
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
G ++ E + ++++
Sbjct: 62 GKCSVKSGEFKDLEPRCSKLLQLG 85
>gi|317970016|ref|ZP_07971406.1| ATP-dependent Clp protease adaptor [Synechococcus sp. CB0205]
Length = 103
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETA 90
M + + RV++++D++ + V+ VL ++ + A
Sbjct: 1 MQPIRSISSSPGGQAVMERQRVRAPYPTGRVIVLDDDHNTFQHVVEVLVKHIPAMVSDRA 60
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+ ++ QG E AE+
Sbjct: 61 WELAHQIDSQGSAVVWSGPLEQAELYHQ 88
>gi|123968534|ref|YP_001009392.1| ATP-dependent Clp protease adaptor [Prochlorococcus marinus str.
AS9601]
gi|123198644|gb|ABM70285.1| Hypothetical protein A9601_10011 [Prochlorococcus marinus str.
AS9601]
Length = 95
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQ 100
N L + + RV++++DN+ + V + L + A + +KV
Sbjct: 3 NSLGTVLEPKKSKAKYPEARVIVLDDNFNTFQHVANCLLTIIPSMSEQRAWDLTIKVDKT 62
Query: 101 GIGECGVYAYEIAEMKVNQV 120
G E E AE+ Q+
Sbjct: 63 GSAEVWRGNLEQAELYHEQL 82
>gi|319952046|ref|YP_004163313.1| ATP-dependent clp protease adaptor protein clps [Cellulophaga
algicola DSM 14237]
gi|319420706|gb|ADV47815.1| ATP-dependent Clp protease adaptor protein ClpS [Cellulophaga
algicola DSM 14237]
Length = 91
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 24/64 (37%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
++L ND + VI L E A+ + VHH G YE + + ++
Sbjct: 22 EIVLFNDEVNTFDHVIETLIGVCDHTPEQAEQCSIIVHHNGKCTVKTGDYEDLKPRCTKL 81
Query: 121 MNYS 124
+
Sbjct: 82 LQAG 85
>gi|126696337|ref|YP_001091223.1| ATP-dependent Clp protease adaptor [Prochlorococcus marinus str.
MIT 9301]
gi|126543380|gb|ABO17622.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9301]
Length = 95
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQ 100
N L + + RV++++DN+ + V + L + A + +KV
Sbjct: 3 NSLGTVLDPKKSKAKYPEARVIVLDDNFNTFQHVANCLLTIIPSMSEQRAWDLTIKVDKT 62
Query: 101 GIGECGVYAYEIAEMKVNQV 120
G E E AE+ Q+
Sbjct: 63 GSAEVWRGNLEQAELYHEQL 82
>gi|163756853|ref|ZP_02163962.1| nucleoside triphosphate pyrophosphohydrolase [Kordia algicida OT-1]
gi|161323242|gb|EDP94582.1| nucleoside triphosphate pyrophosphohydrolase [Kordia algicida OT-1]
Length = 91
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
++L ND+ + VI L E A+ + VH++G YE + + +++
Sbjct: 22 EIVLYNDDVNTFDHVIETLIYACDHTAEQAEQCSIIVHYKGKCTVKTGKYEELKPRCSKL 81
Query: 121 MNYS 124
+
Sbjct: 82 LEAG 85
>gi|124003951|ref|ZP_01688798.1| ATP-dependent Clp protease adaptor protein ClpS [Microscilla marina
ATCC 23134]
gi|123990530|gb|EAY30010.1| ATP-dependent Clp protease adaptor protein ClpS [Microscilla marina
ATCC 23134]
Length = 90
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
++ + ND+ + VI+ L E A+ +H++G V +
Sbjct: 21 QLTVFNDDINTFDHVINTLIEVCNHTPEQAEQCTWIIHYKGKCSVKVGEF 70
>gi|116620336|ref|YP_822492.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Solibacter usitatus Ellin6076]
gi|116223498|gb|ABJ82207.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
Solibacter usitatus Ellin6076]
Length = 115
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 37/89 (41%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+A D+E+ + + LYRV+L++DN ++VI +LQ F + A
Sbjct: 7 QMANPAIAPDTEILEREREQHVPLYRVVLLDDNDHTYDYVIEMLQKIFIFTLDQAYRHAE 66
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYS 124
+V G AE +Q+ Y
Sbjct: 67 EVDRAGRTVLITCELREAEYARDQIQAYG 95
>gi|119624501|gb|EAX04096.1| ubiquitin protein ligase E3 component n-recognin 2, isoform CRA_c
[Homo sapiens]
Length = 187
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 2 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 61
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 62 EQAKSVIVRNTSRQTK-PLKVQV 83
>gi|302834902|ref|XP_002949013.1| hypothetical protein VOLCADRAFT_73976 [Volvox carteri f.
nagariensis]
gi|300265758|gb|EFJ49948.1| hypothetical protein VOLCADRAFT_73976 [Volvox carteri f.
nagariensis]
Length = 160
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 38 AEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEF-VIHVLQNFFYKDHETAKCIMLK 96
+ + + P +Y+V L NDNY E+ V +L+ + A +M +
Sbjct: 63 DSPTITSEPQQGTDRAYKRPPIYKVFLHNDNYNKREYVVKVLLKVVEEITVDDAVTVMQE 122
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
H G+ E AE + R + L +E
Sbjct: 123 AHETGVALVVACPQENAERYCEGL----RLNG--LTSTIEP 157
>gi|72002284|gb|AAZ58086.1| conserved hypothetical protein [Prochlorococcus marinus str.
NATL2A]
gi|123961170|gb|ABM75953.1| Hypothetical protein NATL1_13951 [Prochlorococcus marinus str.
NATL1A]
Length = 111
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 52 SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLKVHHQGIGECGVYAY 110
+K++ P+ R+++++DN+ E V + L + + + ++V +G+ E +
Sbjct: 30 TKIKYPEA-RIIVLDDNFNTFEHVANCLVTIIPGMSEKRSWELAVEVDREGLAEVWRGPF 88
Query: 111 EIAEMKVNQVMN 122
E AE+ Q+++
Sbjct: 89 EQAELYHQQLIS 100
>gi|70944829|ref|XP_742303.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521205|emb|CAH75820.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 190
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 24 FIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPK---LYRVLLVNDNYTPMEFVIHVLQ 80
+ + + + + + E K++ K ++V+L ND+ +V V+
Sbjct: 67 DANLENIKKLRNVVKDIKKENKREYEDEEKLKREKEAYAWKVILYNDDIHNFTYVTDVIV 126
Query: 81 NFFYK-DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
A I ++ H G AEM ++
Sbjct: 127 KVIGYISKAKAHTITVEAHSTGQALILSTWKAKAEMYCEELQK 169
>gi|294463540|gb|ADE77299.1| unknown [Picea sitchensis]
Length = 202
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Query: 26 FMADSRMNKKGIAEFDNCLDS-EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFF 83
+ + + +VR +Y+VLL++ V VL +
Sbjct: 90 RPGFDQSQFDATPSAEEGGEIGKVREKRGTGGGDMYKVLLLDHERHTESQVAAVLPKVVP 149
Query: 84 YKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A+ + G G V E AE +R L+ +E
Sbjct: 150 SVTPEEARKCFHESRQTGAGLVTVTVKEHAEFY---AQMMARS---GLRSTIEPD 198
>gi|161347556|ref|YP_291789.2| ATP-dependent Clp protease adaptor [Prochlorococcus marinus str.
NATL2A]
gi|161407969|ref|YP_001015218.2| ATP-dependent Clp protease adaptor [Prochlorococcus marinus str.
NATL1A]
Length = 98
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 52 SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLKVHHQGIGECGVYAY 110
+K++ P+ R+++++DN+ E V + L + + + ++V +G+ E +
Sbjct: 17 TKIKYPEA-RIIVLDDNFNTFEHVANCLVTIIPGMSEKRSWELAVEVDREGLAEVWRGPF 75
Query: 111 EIAEMKVNQVMN 122
E AE+ Q+++
Sbjct: 76 EQAELYHQQLIS 87
>gi|224419090|ref|ZP_03657096.1| hypothetical protein HcanM9_07438 [Helicobacter canadensis MIT
98-5491]
Length = 41
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 98 HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
HH G G CG+Y Y+IAE K QV +++ Q+PL+ I+E+
Sbjct: 1 HHNGRGMCGIYPYDIAETKAMQVRKMAKEKQFPLRAILEK 40
>gi|157413367|ref|YP_001484233.1| ATP-dependent Clp protease adaptor [Prochlorococcus marinus str.
MIT 9215]
gi|157387942|gb|ABV50647.1| Hypothetical protein P9215_10321 [Prochlorococcus marinus str. MIT
9215]
Length = 95
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQ 100
N L + + RV++++D++ ++V + L A+ + +KV
Sbjct: 3 NSLSTVLDQKKSKAKYPEARVIVLDDSFNTFQYVANCLLTIIPSMSERRARDLTIKVDKT 62
Query: 101 GIGECGVYAYEIAEMKVNQVMN 122
G E E AE+ Q+++
Sbjct: 63 GSAEVWRGNLEQAELYHEQLLS 84
>gi|170114993|ref|XP_001888692.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164636387|gb|EDR00683.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1814
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
Query: 10 YHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNY 69
H + R + A + + + + N D ++ S+ + Y V+L ND
Sbjct: 216 LHDMMRKTV-AFALDFLLDTLDYSPEDPSVPANEADLRLQPSADPMMKDQYCVILWNDEK 274
Query: 70 TPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQ 126
E VI +L + + E A + ++ G V +++ ++
Sbjct: 275 HSFEEVIKLLCDMTNRSREDATQVTQRIDENGREII------DMNTNVTRLLEMAQA 325
>gi|87303756|ref|ZP_01086507.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 5701]
gi|87281713|gb|EAQ73689.1| ATP-dependent Clp protease adaptor protein ClpS [Synechococcus sp.
WH 5701]
Length = 73
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 63 LLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
LL ND ME+V+ L Q + A +ML+ H+ GIG V E AE +
Sbjct: 2 LLHNDPVNSMEYVMATLRQVVPQLSEQDAMAVMLEAHNTGIGLVIVCDIEPAEFYCETLK 61
Query: 122 NYSRQHQYPLQCIMEQK 138
+ L +E +
Sbjct: 62 SK------GLTSTIEPE 72
>gi|37522100|ref|NP_925477.1| hypothetical protein gll2531 [Gloeobacter violaceus PCC 7421]
gi|35213099|dbj|BAC90472.1| gll2531 [Gloeobacter violaceus PCC 7421]
Length = 194
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 50 FSSKVRVPKLYR---VLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGEC 105
+ + P +R V L ND E V+ L + + A + + H +G+
Sbjct: 108 VKTPEKTPLRWRDWVVRLFNDPVNKFEHVVESLCKHVPGMSQDMAWSVAWQAHREGVAAT 167
Query: 106 GVYAYEIAEMKVNQV 120
E+AE+ ++
Sbjct: 168 YQGPREVAELVCEKL 182
>gi|68074201|ref|XP_679015.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499653|emb|CAH94208.1| conserved hypothetical protein [Plasmodium berghei]
Length = 187
Score = 65.2 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKVRVPK---LYRVLLVNDNYTPMEFVIHVLQNFF 83
+ + + + I + E K++ K ++V+L ND+ +V V+
Sbjct: 71 LENIKKLRNVIKDIKKESKREYADEEKLKREKEAYAWKVILYNDDIHNFTYVTDVIVKVI 130
Query: 84 YK-DHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
A I ++ H G AEM +
Sbjct: 131 GYISKAKAHTITVEAHSTGQALILSTWKAKAEMYCEE 167
>gi|311745662|ref|ZP_07719447.1| ATP-dependent Clp protease adaptor protein ClpS [Algoriphagus sp.
PR1]
gi|126575100|gb|EAZ79450.1| ATP-dependent Clp protease adaptor protein ClpS [Algoriphagus sp.
PR1]
Length = 92
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 24/63 (38%)
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
+++ ND+ + V +L E A+ L +H +G + E + ++
Sbjct: 24 LIVYNDDVNTFDHVSTILIKVCKHSPEQAEQCTLIIHFKGKCAVKKGSIEELKPMCEAIL 83
Query: 122 NYS 124
+
Sbjct: 84 DAG 86
>gi|255530138|ref|YP_003090510.1| ATP-dependent Clp protease adaptor protein ClpS [Pedobacter
heparinus DSM 2366]
gi|255343122|gb|ACU02448.1| ATP-dependent Clp protease adaptor protein ClpS [Pedobacter
heparinus DSM 2366]
Length = 93
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 28/63 (44%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+R++L ND+ + VIH + + A+ I +VH++G ++ E+
Sbjct: 23 HRLILWNDDVNTFDHVIHCMMKYLDYSEHQAEKIAWEVHNKGKCAVLEGSFTEMEVYRKI 82
Query: 120 VMN 122
+
Sbjct: 83 LQQ 85
>gi|256818857|ref|YP_003140136.1| ATP-dependent Clp protease adaptor protein ClpS [Capnocytophaga
ochracea DSM 7271]
gi|256580440|gb|ACU91575.1| ATP-dependent Clp protease adaptor protein ClpS [Capnocytophaga
ochracea DSM 7271]
Length = 96
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
++L ND+ + VI L + E A+ + VH +G + +Y
Sbjct: 25 HLILYNDDVNTFDHVIDTLVKVCHHTFEQAEQCAIIVHFKGKCDVKSGSY 74
>gi|91214803|ref|ZP_01251776.1| ribosomal protein L11 methyltransferase [Psychroflexus torquis ATCC
700755]
gi|91187230|gb|EAS73600.1| ribosomal protein L11 methyltransferase [Psychroflexus torquis ATCC
700755]
Length = 91
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 26/65 (40%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
Y +++ ND + VI L D A+ L +H++G ++ + + +
Sbjct: 21 YEIIVYNDEVNTFDHVIETLIKTCDHDSIQAEQCTLLIHYKGKCAVKSGGFDDLKPRCTE 80
Query: 120 VMNYS 124
++
Sbjct: 81 ILKAG 85
>gi|148225284|ref|NP_001089665.1| E3 ubiquitin-protein ligase UBR2 [Xenopus laevis]
gi|71682421|gb|AAI00241.1| MGC115523 protein [Xenopus laevis]
Length = 1750
Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
++ Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 LKKDDTYYCMLFNDEVHTYEQVIYTLQKAVSCSQKEAISFATTVDRDGRRSVRNGDFQSC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSVIVRNTSRQTK-PLKVQV 302
>gi|119624499|gb|EAX04094.1| ubiquitin protein ligase E3 component n-recognin 2, isoform CRA_a
[Homo sapiens]
Length = 406
Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSVIVRNTSRQTK-PLKVQV 302
>gi|189441869|gb|AAI67719.1| ubr2 protein [Xenopus (Silurana) tropicalis]
Length = 1739
Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V+ Y +L ND E VI+ LQ + A V G ++
Sbjct: 207 VKKDDTYYCMLFNDEVHTYEQVIYTLQKAVSCSQKEAISFATTVDRDGRRSVRNGDFQSC 266
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 267 EQAKSVIVRNTSRQTK-PLKVQV 288
>gi|254526218|ref|ZP_05138270.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. MIT 9202]
gi|221537642|gb|EEE40095.1| ATP-dependent Clp protease adaptor protein ClpS [Prochlorococcus
marinus str. MIT 9202]
Length = 95
Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV-LQNFFYKDHETAKCIMLKVHHQ 100
N L + RV++++D+ + V + L A + +KV
Sbjct: 3 NSLSIVLDQKKSKAKYPEARVIVLDDSSNTFQHVAYCFLTIIPSMSERRAWNLTIKVDKT 62
Query: 101 GIGECGVYAYEIAEMKVNQVMN 122
G E E AE+ Q+++
Sbjct: 63 GSAEVWRGNLEQAELYHEQLLS 84
>gi|296317280|ref|NP_001171730.1| E3 ubiquitin-protein ligase UBR2 isoform 2 [Homo sapiens]
gi|33871175|gb|AAH24217.1| UBR2 protein [Homo sapiens]
gi|40352762|gb|AAH64512.1| UBR2 protein [Homo sapiens]
gi|55959497|emb|CAI14737.1| ubiquitin protein ligase E3 component n-recognin 2 [Homo sapiens]
gi|56204452|emb|CAI19919.1| ubiquitin protein ligase E3 component n-recognin 2 [Homo sapiens]
Length = 439
Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSVIVRNTSRQTK-PLKVQV 302
>gi|301610380|ref|XP_002934736.1| PREDICTED: e3 ubiquitin-protein ligase UBR2 [Xenopus (Silurana)
tropicalis]
Length = 1753
Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V+ Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 VKKDDTYYCMLFNDEVHTYEQVIYTLQKAVSCSQKEAISFATTVDRDGRRSVRNGDFQSC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSVIVRNTSRQTK-PLKVQV 302
>gi|299115926|emb|CBN75933.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 212
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 50 FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLKVHHQGIGECGVY 108
+++ +++VL++ D E V+ +Q+ D+ A I + G G CG Y
Sbjct: 115 RATETEDAPMFQVLVIGDEEYNREHVVMSIQDIVPDTDNTRAAEIFEEAQEGGKGFCGTY 174
Query: 109 AYEIAEMKVNQ 119
E AE+ V Q
Sbjct: 175 PEEEAELYVEQ 185
>gi|119624500|gb|EAX04095.1| ubiquitin protein ligase E3 component n-recognin 2, isoform CRA_b
[Homo sapiens]
Length = 1536
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 2 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 61
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 62 EQAKSVIVRNTSRQTK-PLKVQV 83
>gi|311260440|ref|XP_003128474.1| PREDICTED: e3 ubiquitin-protein ligase UBR2-like [Sus scrofa]
Length = 1755
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSVIVRNTSRQTK-PLKVQV 302
>gi|296198173|ref|XP_002806751.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
UBR2-like [Callithrix jacchus]
Length = 1752
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSVIVRNTSRQTK-PLKVQV 302
>gi|315224229|ref|ZP_07866069.1| ATP-dependent Clp protease adaptor protein ClpS [Capnocytophaga
ochracea F0287]
gi|314945962|gb|EFS97971.1| ATP-dependent Clp protease adaptor protein ClpS [Capnocytophaga
ochracea F0287]
Length = 96
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
++L ND+ + VI L + E A+ + VH +G + +Y
Sbjct: 25 HLILYNDDVNTFDHVIDTLVKVCHHTFEQAEQCAIIVHFKGKCDVKSGSY 74
>gi|325106171|ref|YP_004275825.1| ATP-dependent Clp protease adaptor protein ClpS [Pedobacter saltans
DSM 12145]
gi|324975019|gb|ADY54003.1| ATP-dependent Clp protease adaptor protein ClpS [Pedobacter saltans
DSM 12145]
Length = 98
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+A+ + ++ + K +R++L ND+ E VIH L ++ A+ I
Sbjct: 4 NMADVETKEETFTLEEILTSLKKSHRLILWNDDTNTFEHVIHCLCHYLDYSESEAEKIAW 63
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIME 136
VH +G ++ E+ + L +E
Sbjct: 64 TVHTKGKCAILEGSFTEMEVYRKILKQE------GLTVSVE 98
>gi|73972817|ref|XP_532138.2| PREDICTED: similar to ubiquitin protein ligase E3 component
n-recognin 2 isoform 1 [Canis familiaris]
Length = 1755
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSVIVRNTSRQTK-PLKVQV 302
>gi|66347281|emb|CAI95685.1| ubiquitin protein ligase E3 component n-recognin 2 [Homo sapiens]
gi|66347360|emb|CAI95666.1| ubiquitin protein ligase E3 component n-recognin 2 [Homo sapiens]
gi|66347758|emb|CAI95298.1| ubiquitin protein ligase E3 component n-recognin 2 [Homo sapiens]
Length = 1755
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSVIVRNTSRQTK-PLKVQV 302
>gi|27597061|ref|NP_056070.1| E3 ubiquitin-protein ligase UBR2 isoform 1 [Homo sapiens]
gi|73622073|sp|Q8IWV8|UBR2_HUMAN RecName: Full=E3 ubiquitin-protein ligase UBR2; AltName:
Full=N-recognin-2; AltName: Full=Ubiquitin-protein
ligase E3-alpha-2; AltName: Full=Ubiquitin-protein
ligase E3-alpha-II
gi|27434480|gb|AAL32101.1| ubiquitin ligase E3 alpha-II [Homo sapiens]
gi|55959498|emb|CAI14738.1| ubiquitin protein ligase E3 component n-recognin 2 [Homo sapiens]
gi|56204453|emb|CAI19920.1| ubiquitin protein ligase E3 component n-recognin 2 [Homo sapiens]
gi|56417835|emb|CAI20399.1| ubiquitin protein ligase E3 component n-recognin 2 [Homo sapiens]
gi|162319234|gb|AAI56046.1| Ubiquitin protein ligase E3 component n-recognin 2 [synthetic
construct]
Length = 1755
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSVIVRNTSRQTK-PLKVQV 302
>gi|332042562|gb|EGI78763.1| ATP-dependent Clp protease adaptor protein ClpS [Lacinutrix
algicola 5H-3-7-4]
Length = 91
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 25/68 (36%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
+F + + K +++ ND+ + VI+ L E A+ + VH++
Sbjct: 2 STKEKVLEQFDTATKEKKNNEIVVYNDDVNTFDHVINTLIKACDHTPEQAEQCTILVHYK 61
Query: 101 GIGECGVY 108
G
Sbjct: 62 GQCTVKTG 69
>gi|156102867|ref|XP_001617126.1| ATP-dependent Clp protease adaptor protein ClpS containing protein
[Plasmodium vivax SaI-1]
gi|148806000|gb|EDL47399.1| ATP-dependent Clp protease adaptor protein ClpS containing protein
[Plasmodium vivax]
Length = 197
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY-KDHETAKCI 93
K I + + + + ++V+L ND+ +V ++ A I
Sbjct: 85 KEIKKDNIKEFYSEERQKREKETTAWKVILYNDDIHNFTYVTDMIVKVIGQISKAKAHTI 144
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
++ H G AE ++
Sbjct: 145 TVEAHSTGQALILSTWRSQAERYCEELQK 173
>gi|297290842|ref|XP_001088074.2| PREDICTED: e3 ubiquitin-protein ligase UBR2 isoform 1 [Macaca
mulatta]
Length = 1718
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y +L ND E VI+ LQ + A V G ++
Sbjct: 200 LEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 259
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 260 EQAKSVIVRNTSRQTK-PLKVQV 281
>gi|221061051|ref|XP_002262095.1| ATP-dependent Clp protease adaptor protein [Plasmodium knowlesi
strain H]
gi|193811245|emb|CAQ41973.1| ATP-dependent Clp protease adaptor protein,putative [Plasmodium
knowlesi strain H]
Length = 227
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY-KDHETAKCI 93
K I + + + + ++V+L ND+ +V V+ A I
Sbjct: 115 KEIKKDNIKEFYSEEKQKREKETTAWKVILYNDDIHNFTYVTDVIVKVIGQISKAKAHTI 174
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
++ H G AE ++
Sbjct: 175 TVEAHSTGQALILSTWRTQAEKYCEELQK 203
>gi|327405148|ref|YP_004345986.1| ATP-dependent Clp protease adaptor protein ClpS [Fluviicola
taffensis DSM 16823]
gi|327320656|gb|AEA45148.1| ATP-dependent Clp protease adaptor protein ClpS [Fluviicola
taffensis DSM 16823]
Length = 89
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
+++ ND+Y + VI L + E A+ +H+ G + YE E ++
Sbjct: 21 LVIFNDDYNTFDHVIESLIKVCKHEVEQAEQCTWIIHYNGKCQVKRGEYEKLEPMCTALL 80
Query: 122 N 122
Sbjct: 81 E 81
>gi|126663986|ref|ZP_01734980.1| hypothetical protein FBBAL38_12625 [Flavobacteria bacterium BAL38]
gi|126623935|gb|EAZ94629.1| hypothetical protein FBBAL38_12625 [Flavobacteria bacterium BAL38]
Length = 91
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
++L ND+ + VI L D A+ L VH++G +
Sbjct: 22 EIVLHNDDVNTFDHVIDTLMRVCKHDELQAEQCALLVHYKGKCTVKTGPIDQ 73
>gi|149732195|ref|XP_001501430.1| PREDICTED: ubiquitin protein ligase E3 component n-recognin 2
[Equus caballus]
Length = 1756
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRCGDFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N S + PL+ +
Sbjct: 281 EQAKSIIVRNTSSRQTKPLKVQV 303
>gi|159904055|ref|YP_001551399.1| hypothetical protein P9211_15141 [Prochlorococcus marinus str. MIT
9211]
gi|159889231|gb|ABX09445.1| Hypothetical protein P9211_15141 [Prochlorococcus marinus str. MIT
9211]
Length = 145
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNF-FYKDHETAKCIMLKVHHQ 100
N + + + + R+++++DN+ E V + L + + + ++V +
Sbjct: 53 NSTTTVLDPKTTKKKYPEARIIVLDDNFNTFEHVANCLVTIIPGMSEKRSWVLAVEVDRE 112
Query: 101 GIGECGVYAYEIAEMKVNQVMN 122
G+ E E AE+ Q+++
Sbjct: 113 GLAEVWRGPLEQAELYHQQLIS 134
>gi|300798150|ref|NP_001179567.1| E3 ubiquitin-protein ligase UBR2 [Bos taurus]
gi|297488989|ref|XP_002697286.1| PREDICTED: ubiquitin protein ligase E3 component n-recognin 2 [Bos
taurus]
gi|296474470|gb|DAA16585.1| ubiquitin protein ligase E3 component n-recognin 2 [Bos taurus]
Length = 1756
Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 IEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGEFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSIIVRNTSRQTK-PLKVQV 302
>gi|284036516|ref|YP_003386446.1| ATP-dependent Clp protease adaptor protein ClpS [Spirosoma linguale
DSM 74]
gi|283815809|gb|ADB37647.1| ATP-dependent Clp protease adaptor protein ClpS [Spirosoma linguale
DSM 74]
Length = 92
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 29/68 (42%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
++ V +V ++ +++ ND + VI L + E A+ L +H++G
Sbjct: 6 ETVVDVLDQVVETDVHNLVVFNDEVNTFDHVIETLIDVCGHTPEQAEQCTLLIHYKGKCS 65
Query: 105 CGVYAYEI 112
++E
Sbjct: 66 VKNGSWEE 73
>gi|260062041|ref|YP_003195121.1| hypothetical protein RB2501_10627 [Robiginitalea biformata
HTCC2501]
gi|88783603|gb|EAR14774.1| hypothetical protein RB2501_10627 [Robiginitalea biformata
HTCC2501]
Length = 114
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
L + FI + ++ L E + L ++L ND + VI
Sbjct: 9 LREIFFIIFVSNPLDMSTKERLQEELLVEDKQKH------LSEIVLFNDEVNTFDHVIQT 62
Query: 79 LQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
L + E A+ L VHH G +
Sbjct: 63 LIDVCEHTPEQAEQCSLIVHHNGKCTVKTGEF 94
>gi|45657234|ref|YP_001320.1| hypothetical protein LIC11356 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45600472|gb|AAS69957.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 106
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
L+ S+K +RV+L +DN E+VI +L E A ++V +
Sbjct: 6 TPDLNEITEESTKSTGGP-WRVVLWDDNEHTYEYVIEMLVEICMMTVEKAFLHAVQVDKE 64
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
E AE +++NY
Sbjct: 65 KRTVVFSGELEHAEHVQERILNYG 88
>gi|118488912|gb|ABK96265.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 178
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 60 YRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
YRVLL++D+ V VL + E A+ + + G+ V E AE
Sbjct: 101 YRVLLIDDSRHSESLVAKVLPRAVPSVTPEDARKLFHESRENGVAVVIVTVKEHAEFYSQ 160
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
++ L+ ++E
Sbjct: 161 MMIRG------GLRSVIEPD 174
>gi|224099689|ref|XP_002311579.1| predicted protein [Populus trichocarpa]
gi|118488290|gb|ABK95964.1| unknown [Populus trichocarpa]
gi|222851399|gb|EEE88946.1| predicted protein [Populus trichocarpa]
Length = 178
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 60 YRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
YRVLL++D+ V VL + E A+ + + G+ V E AE
Sbjct: 101 YRVLLIDDSRHSESLVAKVLPRAVPSVTPEDARKLFHESRENGVAVVIVTVKEHAEFYSQ 160
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
++ L+ ++E
Sbjct: 161 MMIRG------GLRSVIEPD 174
>gi|158289214|ref|XP_310967.4| AGAP000171-PA [Anopheles gambiae str. PEST]
gi|157018947|gb|EAA06476.4| AGAP000171-PA [Anopheles gambiae str. PEST]
Length = 1773
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA------ 113
+ +L ND E VI L + +H+TA + + +G ++E+
Sbjct: 162 HCTILYNDETHTFEQVIQTLTSIVKCEHKTAIEYVTSIDREGRAVVKCASFEVCKKLKED 221
Query: 114 -EMKVNQVMNYSRQHQYPLQCIM 135
E K + +R PL+ +
Sbjct: 222 IENKAMRSTLTTRAM--PLKVTV 242
>gi|24215331|ref|NP_712812.1| ATP-dependent Clp protease adaptor protein ClpS [Leptospira
interrogans serovar Lai str. 56601]
gi|24196436|gb|AAN49830.1| ATP-dependent Clp protease adaptor protein ClpS [Leptospira
interrogans serovar Lai str. 56601]
Length = 106
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
L+ S+K +RV+L +DN E+VI +L E A +V +
Sbjct: 6 TPDLNEITEESTKSTGGP-WRVVLWDDNEHTYEYVIEMLVEICMMTVEKAFLHAAQVDKE 64
Query: 101 GIGECGVYAYEIAEMKVNQVMNYS 124
E AE +++NY
Sbjct: 65 KRTVVFSGELEHAEHVQERILNYG 88
>gi|326798915|ref|YP_004316734.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobacterium
sp. 21]
gi|326549679|gb|ADZ78064.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobacterium
sp. 21]
Length = 96
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+R++L ND+ + VIH L + A+ I KVH++G Y
Sbjct: 26 HRLILWNDDINTFDHVIHCLMKYLDYSESQAEKIAWKVHNEGKCAVLEGTY 76
>gi|33241004|ref|NP_875946.1| ATP-dependent Clp protease adaptor [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238533|gb|AAQ00599.1| Uncharacterized conserved protein [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 98
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQ 100
N + + + + R+++++DN+ E V + L + + + ++V +
Sbjct: 6 NSTTTVLDPKTTKKKYPEARIIVLDDNFNTFEHVANCLATIIPGMSEKRSWVLAVEVDRE 65
Query: 101 GIGECGVYAYEIAEMKVNQVMN 122
G+ E E AE+ Q+++
Sbjct: 66 GLAEIWRGPLEQAELYHQQLIS 87
>gi|119355896|ref|YP_910540.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobium
phaeobacteroides DSM 266]
gi|119353245|gb|ABL64116.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobium
phaeobacteroides DSM 266]
Length = 105
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
YRV+L ND + VI + + + A+ +VH +G V + +KV+
Sbjct: 33 YRVVLYNDEEHTFDEVISQIIKAVQCNRQKAERCTWEVHTKGRSVVFVGMIDRC-IKVSA 91
Query: 120 VMN 122
V+
Sbjct: 92 VLE 94
>gi|78189970|ref|YP_380308.1| hypothetical protein Cag_2017 [Chlorobium chlorochromatii CaD3]
gi|78172169|gb|ABB29265.1| hypothetical protein Cag_2017 [Chlorobium chlorochromatii CaD3]
Length = 118
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+RV+L ND E VI L A+ + VH +G + E A
Sbjct: 45 FRVILFNDEEHTFEEVIQQLMIALSCTRSKAERLTWVVHTRGRCMVFAGSLEEA 98
>gi|224007869|ref|XP_002292894.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971756|gb|EED90090.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 164
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 34/90 (37%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKC 92
++ + D + + Y + L +DN E+V L + A
Sbjct: 62 DRPSTFQPQKSTDYDQTTDDALNPDGPYTLRLFDDNLNTKEWVARSLVYVVGLCEQDAYA 121
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
M + H GI + G Y ++IAE +++
Sbjct: 122 KMTEAHTMGIAKVGDYRFDIAECYRREMLK 151
>gi|116328512|ref|YP_798232.1| hypothetical protein LBL_1862 [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116331240|ref|YP_800958.1| hypothetical protein LBJ_1643 [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116121256|gb|ABJ79299.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116124929|gb|ABJ76200.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 104
Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+RV+L +DN E+VI +L E A ++V + +E AE
Sbjct: 21 PWRVVLWDDNEHTYEYVIEMLVEICMMTVEKAFLHAVQVDQEKRTIVFSGEFEHAEHVQE 80
Query: 119 QVMNYS 124
+++ Y
Sbjct: 81 RILTYG 86
>gi|223996201|ref|XP_002287774.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976890|gb|EED95217.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 194
Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 26 FMADSRMNKKGIAEFD-NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY 84
M K+G+ + +++ + +++RV+L ND +VI LQ
Sbjct: 72 AMERDTSKKRGLTTITIDKEETDTQMEEDDTPEEVWRVILHNDEVHTFNYVIRSLQKVIG 131
Query: 85 -KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
D + A I + H G E A + + L + +
Sbjct: 132 TLDKKKAHDICVVTHGTGQATVTQCWKEQAMKYCVGMQR------FGLTASIAPE 180
>gi|294506972|ref|YP_003571030.1| ATP-dependent Clp protease adaptor protein clpS, [Salinibacter
ruber M8]
gi|294343300|emb|CBH24078.1| ATP-dependent Clp protease adaptor protein clpS, putative
[Salinibacter ruber M8]
Length = 112
Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 20/55 (36%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ V+L ND E VI L A+ + VH++G +E
Sbjct: 40 PWFVILFNDEVHTFEEVIGQLVKATGCSRSEAEDMAWTVHNEGKATVYEGTFEEC 94
>gi|209867672|gb|ACI90360.1| ubiquitin ligase E3 alpha-II-like protein [Philodina roseola]
Length = 1580
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
K Y +L ND E VI+VL V +G + ++E +
Sbjct: 285 KKYVTMLFNDEVHTYEQVINVLSRAIQCTKAEGHEFASLVDREGRTAIRIGSFEQC--RD 342
Query: 118 NQVMNYSRQHQYPLQCIM 135
Q R + PL+C++
Sbjct: 343 AQETIRLRTAELPLKCVI 360
>gi|149641443|ref|XP_001509245.1| PREDICTED: similar to ubiquitin ligase E3 alpha-II [Ornithorhynchus
anatinus]
Length = 1754
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 45 DSEVRFSSKVRVPKL---YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ E S + +P+ Y +L ND + VI+ LQ + A V G
Sbjct: 209 EKENELPSDLEIPERSDTYYCMLFNDEVHTYDQVIYTLQKAVSCTQKEAIGFATTVDRDG 268
Query: 102 IGECGVYAYEIAEM-KVNQVMNYSRQHQYPLQCIM 135
++ E K V N SRQ + PL+ +
Sbjct: 269 RRSVRYGDFQYCEQAKSVIVRNTSRQTK-PLKVQV 302
>gi|313677040|ref|YP_004055036.1| ATP-dependent clp protease adaptor protein clps [Marivirga
tractuosa DSM 4126]
gi|312943738|gb|ADR22928.1| ATP-dependent Clp protease adaptor protein ClpS [Marivirga
tractuosa DSM 4126]
Length = 98
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 24/68 (35%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
D + +++ ND+ + VI+ L E A+ L VH++G
Sbjct: 11 EEDKREEVLETTSDEDINDLIVYNDDVNTFDHVINTLIKVCKHSPEQAEQCTLLVHYKGK 70
Query: 103 GECGVYAY 110
++
Sbjct: 71 CAVKKGSF 78
>gi|301757394|ref|XP_002914556.1| PREDICTED: e3 ubiquitin-protein ligase UBR2-like [Ailuropoda
melanoleuca]
Length = 1662
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 IEKRDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N SRQ + PL+ +
Sbjct: 281 EQAKSVIVRNTSRQTK-PLKVQV 302
>gi|83815654|ref|YP_445096.1| ATP-dependent Clp protease adaptor protein ClpS, putative
[Salinibacter ruber DSM 13855]
gi|83757048|gb|ABC45161.1| ATP-dependent Clp protease adaptor protein ClpS, putative
[Salinibacter ruber DSM 13855]
Length = 115
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 20/55 (36%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ V+L ND E VI L A+ + VH++G +E
Sbjct: 43 PWFVILFNDEVHTFEEVIGQLVKATGCSRSEAEDMAWTVHNEGKATVYEGTFEEC 97
>gi|126310021|ref|XP_001362267.1| PREDICTED: similar to ubiquitin ligase E3 alpha-II [Monodelphis
domestica]
Length = 1754
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 45 DSEVRFSSKVR---VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQG 101
+ E + Y +L ND E VI+ LQ + A V G
Sbjct: 209 EKENELPPDLEIVGKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDG 268
Query: 102 IGECGVYAYEIAEM-KVNQVMNYSRQHQYPLQCIM 135
++ E K V N SRQ + PL+ +
Sbjct: 269 RRSVRYGDFQYCEQAKSVIVRNTSRQTK-PLKVQV 302
>gi|312891251|ref|ZP_07750770.1| ATP-dependent Clp protease adaptor protein ClpS [Mucilaginibacter
paludis DSM 18603]
gi|311296211|gb|EFQ73361.1| ATP-dependent Clp protease adaptor protein ClpS [Mucilaginibacter
paludis DSM 18603]
Length = 100
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
L+R++L ND+ + VI+ + + + I KVH++G ++ E+
Sbjct: 29 LHRLILWNDDVNSFDHVIYCMMKYLDYTESQGEKIAWKVHNEGKCAVLEGSFTEMEIYRK 88
Query: 119 QVMN 122
+
Sbjct: 89 ILQQ 92
>gi|47222375|emb|CAG05124.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1586
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 63 LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM-KVNQVM 121
+L ND E VI+ LQ + A V G ++ E K V
Sbjct: 1 MLFNDEVHTYEQVIYTLQKAVNCSQKEAVSFATTVDRDGRKSVRYGDFQFCEQAKSVIVR 60
Query: 122 NYSRQHQYPLQCIM 135
N SRQ + PL+ +
Sbjct: 61 NTSRQSK-PLRVEV 73
>gi|320167589|gb|EFW44488.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 3095
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 14/114 (12%)
Query: 18 ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIH 77
L F+ + + + EFDN P+L+ V+L ND + VI+
Sbjct: 706 ALKAACFVRDSAEAPSWANVDEFDN--------------PELFVVVLYNDEKHSFDQVIN 751
Query: 78 VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
L+ AK + VH +G + ++ + PL
Sbjct: 752 QLKRGVGMSPSDAKHTAMVVHAEGRAIVCSGTEDECMEARRRLQRTDSSNTEPL 805
>gi|291396211|ref|XP_002714453.1| PREDICTED: ubiquitin protein ligase E3 component n-recognin 2
[Oryctolagus cuniculus]
Length = 1758
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEM-KVN 118
Y +L ND E VI+ LQ + A V G ++ E K
Sbjct: 227 YYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCEQAKSV 286
Query: 119 QVMNYSRQHQYPLQCIM 135
V N SRQ + PL+ +
Sbjct: 287 IVRNTSRQTK-PLKVQV 302
>gi|189345584|ref|YP_001942113.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobium
limicola DSM 245]
gi|189339731|gb|ACD89134.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobium
limicola DSM 245]
Length = 102
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 20/54 (37%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
YRV+L ND + VI + A+ + +VH +G E
Sbjct: 30 YRVVLFNDEEHSFDEVIFQIIKAVNCSRSKAEKLTWEVHSRGRAIVFSGTIERC 83
>gi|297678142|ref|XP_002816961.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase
UBR2-like [Pongo abelii]
Length = 1729
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
V Y +L ND E VI+ LQ + A V G ++
Sbjct: 221 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 280
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
E K V N RQ + PL+ +
Sbjct: 281 EQAKSVIVRNTIRQTK-PLKVQV 302
>gi|193215164|ref|YP_001996363.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroherpeton
thalassium ATCC 35110]
gi|193088641|gb|ACF13916.1| ATP-dependent Clp protease adaptor protein ClpS [Chloroherpeton
thalassium ATCC 35110]
Length = 103
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
Y+V+L ND+Y E VI+ L A+ +VH++G +A +KV+
Sbjct: 29 PYKVVLFNDDYHTFEEVIYQLMKATGCSRGKAEHHTWEVHNRGRSIVYDGDL-MACVKVS 87
Query: 119 QVMN 122
V+
Sbjct: 88 AVLE 91
>gi|78185910|ref|YP_373953.1| hypothetical protein Plut_0018 [Chlorobium luteolum DSM 273]
gi|78165812|gb|ABB22910.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 109
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 27 MADSRMNKKGIAEFDNCLDSEVRFSSKV---RVPKLYRVLLVNDNYTPMEFVIHVLQNFF 83
M R+++ D E S YRV+L ND + VI +
Sbjct: 1 MKPLRISRDMYTCIDPGTKHETLESPATPGTDTGDAYRVVLFNDEEHSFDEVIFQIILAV 60
Query: 84 YKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ A+ + ++VH+ G E
Sbjct: 61 RCSRQKAQQLTMEVHNSGRAIVFSGLIERC 90
>gi|298209257|ref|YP_003717436.1| hypothetical protein CA2559_13473 [Croceibacter atlanticus
HTCC2559]
gi|83849184|gb|EAP87053.1| hypothetical protein CA2559_13473 [Croceibacter atlanticus
HTCC2559]
Length = 91
Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 23/70 (32%)
Query: 41 DNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
K K ++L ND+ + VI L + A+ L VH++
Sbjct: 2 SPEEKLLEALDIKTVEKKENEIVLYNDDVNTFDHVIETLISACDHQPLQAEQCALLVHYK 61
Query: 101 GIGECGVYAY 110
G ++
Sbjct: 62 GKCTVKSGSF 71
>gi|224111322|ref|XP_002315814.1| predicted protein [Populus trichocarpa]
gi|222864854|gb|EEF01985.1| predicted protein [Populus trichocarpa]
Length = 178
Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 60 YRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
YRVLL++D V VL Q + A+ + + G+ V E AE
Sbjct: 101 YRVLLIDDARHSERLVAKVLPQAVPSVTPDDARKLFHESRENGVAVVIVTVKEHAEFYSQ 160
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
++ L+ I+E +
Sbjct: 161 MMVRG------GLRSIIEPE 174
>gi|82539394|ref|XP_724088.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23478615|gb|EAA15653.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 120
Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPK---LYRVLLVNDNYTPMEFVIHVLQNFFYK-DHE 88
N+ I + E K++ K ++V+L ND+ +V V+
Sbjct: 5 NRNVIKDIKKENKREYADEEKLKREKEAYAWKVILYNDDIHNFTYVTDVIVKVIGYISKA 64
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
A I ++ H G AEM ++
Sbjct: 65 KAHTITVEAHSTGQALILSTWKSKAEMYCEELQK 98
>gi|220909605|ref|YP_002484916.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7425]
gi|219866216|gb|ACL46555.1| ATP-dependent Clp protease adaptor protein ClpS [Cyanothece sp. PCC
7425]
Length = 234
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 71 PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
+EF++ VL F E A + H QG G AE K+N ++ +R+ P
Sbjct: 153 SIEFLVTVLSQVFELPREVAFNTATETHRQGQGYVLTLRKAEAEEKINLALDMARKQGSP 212
Query: 131 LQCI 134
L+
Sbjct: 213 LRLT 216
>gi|327262408|ref|XP_003216016.1| PREDICTED: e3 ubiquitin-protein ligase UBR2-like [Anolis
carolinensis]
Length = 1754
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
I +D + + V++ Y +L ND E VI+ LQ + A
Sbjct: 204 DILTWDKENEVPPALET-VKMTDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFAT 262
Query: 96 KVHHQGIGECGVYAYEIAEM-KVNQVMNYSRQHQYPLQCIM 135
V G ++ + K V N SRQ + PL+ +
Sbjct: 263 TVDRDGRRSVRYGDFQYCDQAKSVIVRNTSRQTK-PLKVQV 302
>gi|326915243|ref|XP_003203929.1| PREDICTED: e3 ubiquitin-protein ligase UBR2-like [Meleagris
gallopavo]
Length = 1839
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
Y +L ND E VI+ LQ + A V G ++
Sbjct: 308 TEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 367
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
+ K V N SRQ + PL+ +
Sbjct: 368 DQAKSVIVRNTSRQTK-PLKVQV 389
>gi|307195539|gb|EFN77425.1| E3 ubiquitin-protein ligase UBR2 [Harpegnathos saltator]
Length = 1786
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVN 118
Y +L ND + VI+ L A + V +G + E++ +
Sbjct: 252 YCTVLFNDETHTFDHVINTLTRILKCLQRDAVEYVNNVDREGRAVVRCSGFRQCNELRTD 311
Query: 119 QVMNYSRQHQYPLQCIM 135
SR + PL+ ++
Sbjct: 312 IERFTSRHNNRPLKVLV 328
>gi|71033697|ref|XP_766490.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353447|gb|EAN34207.1| hypothetical protein TP01_0969 [Theileria parva]
Length = 198
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCI 93
K S+ +V +RV+L ND+ +V + A I
Sbjct: 100 KEKEVTQTSPGSKEEREKEVNS---WRVILYNDDIHNFMYVTESISKCVPQLPLARAHLI 156
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYS 124
L+ H G E + AE ++ +
Sbjct: 157 TLEAHKNGQAEIIRTWKDKAEQYCRELQKFG 187
>gi|189499028|ref|YP_001958498.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobium
phaeobacteroides BS1]
gi|189494469|gb|ACE03017.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobium
phaeobacteroides BS1]
Length = 101
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
YRV+L ND + VI + A+ +VH +G A +KV+
Sbjct: 29 YRVVLFNDEEHTFDEVILQIIKAIQCSRSKAEKHTWEVHTKGRSIVFAGPL-PACLKVSA 87
Query: 120 VMN 122
++
Sbjct: 88 ILE 90
>gi|118087943|ref|XP_419446.2| PREDICTED: similar to ubiquitin ligase E3 alpha-II [Gallus gallus]
Length = 1732
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
Y +L ND E VI+ LQ + A V G ++
Sbjct: 201 TEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 260
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
+ K V N SRQ + PL+ +
Sbjct: 261 DQAKSVIVRNTSRQTK-PLKVQV 282
>gi|224047192|ref|XP_002195137.1| PREDICTED: ubiquitin protein ligase E3 component n-recognin 2
[Taeniopygia guttata]
Length = 1751
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ Y +L ND E VI+ LQ + A V G ++
Sbjct: 220 IEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYC 279
Query: 114 EM-KVNQVMNYSRQHQYPLQCIM 135
+ K V N SRQ + PL+ +
Sbjct: 280 DQAKSVIVRNTSRQTK-PLKVQV 301
>gi|219111873|ref|XP_002177688.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410573|gb|EEC50502.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 167
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKCIMLKVHHQGI 102
D + + +Y+++L+ D+ E VI + D + A + + G
Sbjct: 74 GDPVQKRDEDFQDAPMYKLMLLADDGYDGEHVITRMCAILEDMDEDAAATVFKQAQQSGK 133
Query: 103 GECGVYAYEIAEMKVNQV 120
CG Y +E AE+ Q+
Sbjct: 134 AMCGKYPFERAELFKEQL 151
>gi|284045641|ref|YP_003395981.1| ATP-dependent Clp protease adaptor protein ClpS [Conexibacter
woesei DSM 14684]
gi|283949862|gb|ADB52606.1| ATP-dependent Clp protease adaptor protein ClpS [Conexibacter
woesei DSM 14684]
Length = 95
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+RV++ ND++ + V L + ++H+ G E+AE+
Sbjct: 21 WRVIVKNDDHNTFDHVARTLARYIPGVTIAVGYDYADRIHNSGQAIVWSGQREVAELYWE 80
Query: 119 QVM 121
Q+
Sbjct: 81 QLQ 83
>gi|300772163|ref|ZP_07082033.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobacterium
spiritivorum ATCC 33861]
gi|300760466|gb|EFK57292.1| ATP-dependent Clp protease adaptor protein ClpS [Sphingobacterium
spiritivorum ATCC 33861]
Length = 101
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMK 116
R++L ND + VI L + A+ I KVH +G ++ E+
Sbjct: 32 RLILWNDETNTFDHVIECLMKHLQYTEKQAEQIAWKVHTEGKCAILEGSFTEMEVY 87
>gi|194332900|ref|YP_002014760.1| ATP-dependent Clp protease adaptor protein ClpS [Prosthecochloris
aestuarii DSM 271]
gi|194310718|gb|ACF45113.1| ATP-dependent Clp protease adaptor protein ClpS [Prosthecochloris
aestuarii DSM 271]
Length = 101
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
YRV+L ND+ + VI + A+ +VH +G
Sbjct: 29 YRVILFNDDVHTFDEVIIQIIKAVACSRAKAEQHTWEVHTRGRSIVFSG 77
>gi|227536203|ref|ZP_03966252.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227244100|gb|EEI94115.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 93
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 61 RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
R++L ND + VI L + A+ I KVH +G ++ E+ +
Sbjct: 24 RLILWNDETNTFDHVIECLMKHLQYTEKQAEQIAWKVHTEGKCAILEGSFTEMEVYRKIL 83
Query: 121 MNYSRQHQYPLQCIME 136
+ L +E
Sbjct: 84 KSE------GLTVSVE 93
>gi|219113881|ref|XP_002176127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|219121875|ref|XP_002181283.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402919|gb|EEC42878.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407269|gb|EEC47206.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 87
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY-KDHETAKCIMLKVHHQGIGEC 105
E + R +++RV+L ND +VI L D + A I ++ H G
Sbjct: 1 ETLPEEQKRKEEMWRVVLHNDEVHTFNYVIRSLCKVIGTLDRKAAFEICVQTHGIGKATI 60
Query: 106 GVYAYEIAEMKV 117
+ AE
Sbjct: 61 TKTWKKQAEQHC 72
>gi|269218714|ref|ZP_06162568.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces sp.
oral taxon 848 str. F0332]
gi|269211825|gb|EEZ78165.1| ATP-dependent Clp protease adaptor protein ClpS [Actinomyces sp.
oral taxon 848 str. F0332]
Length = 62
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 72 MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPL 131
M +V V +++F+ A+ +ML+VH++G A E E + + Y L
Sbjct: 1 MTYVEWVFESYFHISRRRARMLMLQVHNEGRAVVSRGAREQMEADAQAMQS------YGL 54
Query: 132 QCIMEQ 137
+E+
Sbjct: 55 WATIEE 60
>gi|326675715|ref|XP_002665264.2| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase UBR1
[Danio rerio]
Length = 1697
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 8/104 (7%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ ++ D KV+ Y +L ND + + VI+ LQ D A+
Sbjct: 190 DMLIWEENNDLSEELKPKVKEDS-YFCILYNDEHHSYDHVIYTLQRAIACDQNQAQVYTA 248
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQY----PLQCIM 135
+ +G + + + R ++ PL+ +
Sbjct: 249 LIDKEGRRAVKRGTLRTCQQAKDNIR---RNSEHIIQKPLRVEV 289
>gi|194335225|ref|YP_002017019.1| ATP-dependent Clp protease adaptor protein ClpS [Pelodictyon
phaeoclathratiforme BU-1]
gi|194307702|gb|ACF42402.1| ATP-dependent Clp protease adaptor protein ClpS [Pelodictyon
phaeoclathratiforme BU-1]
Length = 105
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
YRV+L ND E VI + + A+ +VH +G
Sbjct: 33 YRVVLFNDEEHTFEEVIEQIIKAVRCSRQKAEKHTWEVHTRGRSIV 78
>gi|33391146|gb|AAQ17202.1| ubiquitin ligase UBR2 [Mus musculus]
Length = 1756
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
Y +L ND E VI+ LQ + A V G ++ +
Sbjct: 222 EKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCD 281
Query: 115 M-KVNQVMNYSRQHQYPLQCIM 135
K V N SRQ + PL+ +
Sbjct: 282 QAKTVIVRNTSRQTK-PLKVQV 302
>gi|293651567|ref|NP_001170845.1| E3 ubiquitin-protein ligase UBR2 isoform 2 [Mus musculus]
gi|74226229|dbj|BAE25301.1| unnamed protein product [Mus musculus]
Length = 1755
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
Y +L ND E VI+ LQ + A V G ++ +
Sbjct: 222 EKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCD 281
Query: 115 M-KVNQVMNYSRQHQYPLQCIM 135
K V N SRQ + PL+ +
Sbjct: 282 QAKTVIVRNTSRQTK-PLKVQV 302
>gi|58615693|ref|NP_666190.2| E3 ubiquitin-protein ligase UBR2 isoform 1 [Mus musculus]
gi|73622074|sp|Q6WKZ8|UBR2_MOUSE RecName: Full=E3 ubiquitin-protein ligase UBR2; AltName:
Full=N-recognin-2; AltName: Full=Ubiquitin-protein
ligase E3-alpha-2; AltName: Full=Ubiquitin-protein
ligase E3-alpha-II
gi|49522661|gb|AAH75642.1| Ubiquitin protein ligase E3 component n-recognin 2 [Mus musculus]
Length = 1755
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
Y +L ND E VI+ LQ + A V G ++ +
Sbjct: 222 EKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCD 281
Query: 115 M-KVNQVMNYSRQHQYPLQCIM 135
K V N SRQ + PL+ +
Sbjct: 282 QAKTVIVRNTSRQTK-PLKVQV 302
>gi|74184606|dbj|BAE27917.1| unnamed protein product [Mus musculus]
Length = 1755
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
Y +L ND E VI+ LQ + A V G ++ +
Sbjct: 222 EKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCD 281
Query: 115 M-KVNQVMNYSRQHQYPLQCIM 135
K V N SRQ + PL+ +
Sbjct: 282 QAKTVIVRNTSRQTK-PLKVQV 302
>gi|124513168|ref|XP_001349940.1| ATP-dependent Clp protease adaptor protein ClpS containing protein
[Plasmodium falciparum 3D7]
gi|23615357|emb|CAD52348.1| ATP-dependent Clp protease adaptor protein ClpS containing protein
[Plasmodium falciparum 3D7]
Length = 192
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFY-KDHETAK 91
K I E D E + ++V+L ND+ +V V+ A
Sbjct: 88 KKDNIKEADEHEKKEREKET-----SAWKVILYNDDIHNFTYVTDVIVKVVGQISKAKAH 142
Query: 92 CIMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
I ++ H G AE ++
Sbjct: 143 TITVEAHSTGQALILSTWKSKAEKYCQELQQ 173
>gi|296010825|ref|NP_001171542.1| ubiquitin protein ligase E3 component n-recognin 2 [Rattus
norvegicus]
gi|295443879|dbj|BAJ06628.1| UBR2 [Rattus norvegicus]
Length = 1755
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
Y +L ND E VI+ LQ + A V G ++ +
Sbjct: 222 EKTDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCD 281
Query: 115 M-KVNQVMNYSRQHQYPLQCIM 135
K V N SRQ + PL+ +
Sbjct: 282 QAKTVIVRNTSRQTK-PLKVQV 302
>gi|168029911|ref|XP_001767468.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681364|gb|EDQ67792.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 118
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 9/114 (7%)
Query: 28 ADSRMNKKGIAEFDNCLDSEVRFSSKVRVP--KLYRVLLVNDNYTPMEFVIHVL-QNFFY 84
+ R + + R + YRVLL++ +V L +
Sbjct: 8 PKLDQSGSDTTPRTEEGGESGRAAQRNRTGGGERYRVLLLDHERHTETYVAKALTKAVPN 67
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
E A+ + G V E AEM + +R Y L+ +E
Sbjct: 68 ITAEQARKCFFESRLIGKSVVMVAVKEHAEMHAF---SMAR---YGLRSTIEPD 115
>gi|322780883|gb|EFZ10112.1| hypothetical protein SINV_80283 [Solenopsis invicta]
Length = 1800
Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVN 118
Y +L ND + + VI++L + A + V +G + E++ +
Sbjct: 254 YCTVLFNDEHHTFDQVINMLTRVLKCSQKEAVEYVTNVDREGRAVIKCSIFRHCNELRGD 313
Query: 119 QVMNYSRQHQYPLQCIM 135
R PL+ ++
Sbjct: 314 VEKFTYRHSNRPLKVLV 330
>gi|254414360|ref|ZP_05028127.1| ATP-dependent Clp protease adaptor protein ClpS [Microcoleus
chthonoplastes PCC 7420]
gi|196179035|gb|EDX74032.1| ATP-dependent Clp protease adaptor protein ClpS [Microcoleus
chthonoplastes PCC 7420]
Length = 63
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 72 MEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
ME+V+ L Q A IM++ H+ GI A E AE + N +
Sbjct: 1 MEYVVQALIQTVPSLTQPQAVNIMMEAHNSGIALVITCALEHAEFYCETLKN------HG 54
Query: 131 LQCIMEQK 138
L +E
Sbjct: 55 LTSTIEPD 62
>gi|256425533|ref|YP_003126186.1| ATP-dependent Clp protease adaptor protein ClpS [Chitinophaga
pinensis DSM 2588]
gi|256040441|gb|ACU63985.1| ATP-dependent Clp protease adaptor protein ClpS [Chitinophaga
pinensis DSM 2588]
Length = 102
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+ +++ ND ++VI L E A+ L +HH G +
Sbjct: 26 PFSLIVWNDEVNTFDWVIQSLIEVCDHTQEQAEQCALIIHHNGKYAVKQGEF 77
>gi|124481894|gb|AAI33177.1| LOC568531 protein [Danio rerio]
Length = 871
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 8/104 (7%)
Query: 36 GIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
+ ++ D KV+ Y +L ND + + VI+ LQ D A+
Sbjct: 190 DMLIWEENNDLSEELKPKVKEDS-YFCILYNDEHHSYDHVIYTLQRAIACDQNQAQVYTA 248
Query: 96 KVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQY----PLQCIM 135
+ +G + + + R ++ PL+ +
Sbjct: 249 LIDKEGRRAVKRGTLRTCQQAKDNIR---RNSEHIIQKPLRVEV 289
>gi|27434482|gb|AAL32102.1| ubiquitin ligase E3 alpha-II [Mus musculus]
Length = 1755
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
Y +L ND E VI+ LQ + A V G ++ +
Sbjct: 222 EKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRPVRYGDFQYCD 281
Query: 115 M-KVNQVMNYSRQHQYPLQCIM 135
K V N SRQ + PL+ +
Sbjct: 282 QAKTVIVRNTSRQTK-PLKVQV 302
>gi|195567258|ref|XP_002107186.1| GD15710 [Drosophila simulans]
gi|194204588|gb|EDX18164.1| GD15710 [Drosophila simulans]
Length = 385
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKV 117
Y +L ND + VI L + A I+ + +G +E ++KV
Sbjct: 87 QYCTVLYNDESHTFDQVIQTLTKIAKCRPKDAMEIVAAIDREGRAVVKCDTFEECNKLKV 146
Query: 118 NQVMNY---------SRQHQ 128
+ +R +Q
Sbjct: 147 SIENQMILPTSLLSTARNNQ 166
>gi|214090057|gb|ACJ63449.1| putative ATP-dependent Clp protease adaptor protein [Ochrobactrum
sp. 11a]
Length = 64
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
+ G +N R K + P LYRVLL+ND+YTPMEFV+HV
Sbjct: 17 QSKTDGGNGPENGTVVVTRTQPKTKKPSLYRVLLLNDDYTPMEFVVHV 64
>gi|195351612|ref|XP_002042328.1| GM13349 [Drosophila sechellia]
gi|194124171|gb|EDW46214.1| GM13349 [Drosophila sechellia]
Length = 1825
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKV 117
Y +L ND + VI L + A I+ + +G +E ++KV
Sbjct: 234 QYCTVLYNDESHTFDQVIQTLTKIAKCRPKDAMEIVAAIDREGRAVVKCDTFEECNKLKV 293
Query: 118 NQVMNY---------SRQHQ 128
+ +R +Q
Sbjct: 294 SIENQMILPTSLLSTARNNQ 313
>gi|224419091|ref|ZP_03657097.1| ATP-dependent Clp protease, adaptor protein ClpS [Helicobacter
canadensis MIT 98-5491]
Length = 58
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
N +++ K++ P Y+V+L+ND+YT +FVI +LQ F+K E + +ML
Sbjct: 5 NQIENATETLEKLQEPIRYKVILLNDDYTTQDFVIEILQKVFHKGFEESLNLML 58
>gi|26350449|dbj|BAC38864.1| unnamed protein product [Mus musculus]
Length = 861
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
Y +L ND E VI+ LQ + A V G ++ +
Sbjct: 25 EKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCD 84
Query: 115 M-KVNQVMNYSRQHQYPLQCIM 135
K V N SRQ + PL+ +
Sbjct: 85 QAKTVIVRNTSRQTK-PLKVQV 105
>gi|224008955|ref|XP_002293436.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970836|gb|EED89172.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 485
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVN 118
YR++L ND + E V VL+ + A IM++ H G G EI+ E
Sbjct: 409 YRIVLYNDRFNKRERVEGVLKEVASLNITEANKIMMEAHTLGRGVV----REISDEEDAK 464
Query: 119 QVMNYSRQHQYPLQCIME 136
+ R+ L +E
Sbjct: 465 SLCEELRRED--LLVELE 480
>gi|145218844|ref|YP_001129553.1| ATP-dependent Clp protease adaptor protein ClpS [Prosthecochloris
vibrioformis DSM 265]
gi|145205008|gb|ABP36051.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobium
phaeovibrioides DSM 265]
Length = 93
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+RV+L ND + VI + A+ + ++VH+ G E
Sbjct: 21 PFRVVLFNDEEHSFDEVIFQIIKAVRCSRAKAEALTMEVHNSGRSIVYTGPIEQC 75
>gi|115440869|ref|NP_001044714.1| Os01g0833600 [Oryza sativa Japonica Group]
gi|56202320|dbj|BAD73779.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113534245|dbj|BAF06628.1| Os01g0833600 [Oryza sativa Japonica Group]
gi|125572535|gb|EAZ14050.1| hypothetical protein OsJ_03975 [Oryza sativa Japonica Group]
Length = 172
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 60 YRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
Y+VLL++D + V L Q E A+ + +G V E AE
Sbjct: 94 YKVLLIDDARHTEKLVEKALPQVVPSVTAEAARQLFHASRQKGAALVIVAVKEHAEFY-- 151
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
RQ L+ +E +
Sbjct: 152 -AQMMVRQ---GLRSAIEPE 167
>gi|194769816|ref|XP_001966997.1| GF21816 [Drosophila ananassae]
gi|190622792|gb|EDV38316.1| GF21816 [Drosophila ananassae]
Length = 1820
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
Y +L ND + VI L H+ A I+ + +G ++I
Sbjct: 233 PQYCTVLYNDESHTFDQVIQTLTKIAKCRHKDAMEIVAAIDREGRAVVKCDTFKIC 288
>gi|170582638|ref|XP_001896220.1| Zinc finger in N-recognin family protein [Brugia malayi]
gi|158596620|gb|EDP34934.1| Zinc finger in N-recognin family protein [Brugia malayi]
Length = 1716
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMK 116
LY+ +L+ND + VI L + +H A + + +G + + K
Sbjct: 223 PLYQTILLNDETHTFDSVIRALNLSIHCNHPQALQLATVIDREGRASVRNGNIDYCIKAK 282
Query: 117 VNQVMNYSRQHQY 129
R +
Sbjct: 283 DEIQRRTQRDSNH 295
>gi|119489795|ref|ZP_01622553.1| ATP-dependent Clp protease adaptor protein ClpS [Lyngbya sp. PCC
8106]
gi|119454369|gb|EAW35519.1| ATP-dependent Clp protease adaptor protein ClpS [Lyngbya sp. PCC
8106]
Length = 63
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 72 MEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
ME+V+ VL Q A IM++ H G+ A E AE + + +
Sbjct: 1 MEYVVQVLLQTVPSLTQPQAVSIMMEAHTNGLALVITCAQEHAEFYCETL----KNNG-- 54
Query: 131 LQCIMEQK 138
L +E
Sbjct: 55 LTSTIEPD 62
>gi|21675046|ref|NP_663111.1| hypothetical protein CT2237 [Chlorobium tepidum TLS]
gi|21648283|gb|AAM73453.1| hypothetical protein CT2237 [Chlorobium tepidum TLS]
Length = 99
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 12/84 (14%)
Query: 22 MSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN 81
M + +++ + D +RV+L ND+ + VI +
Sbjct: 1 MIRLTASNNPDTRTEELIADVDTLDA------------WRVVLFNDDDHTFDEVIFQIIK 48
Query: 82 FFYKDHETAKCIMLKVHHQGIGEC 105
A+ +VH +G
Sbjct: 49 AVRCTRSIAEKHTWEVHTRGRAIV 72
>gi|156083184|ref|XP_001609076.1| ATP-dependent Clp protease adaptor protein ClpS domain containing
protein [Babesia bovis T2Bo]
gi|154796326|gb|EDO05508.1| ATP-dependent Clp protease adaptor protein ClpS domain containing
protein [Babesia bovis]
Length = 217
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 44 LDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGI 102
+D + + K +RV++ ND+ + +V + E A I ++ H G
Sbjct: 92 MDDQTKQERK-EETTAWRVVIYNDDIHSIPYVTESIADAIPQISREVAHTITMEAHSTGQ 150
Query: 103 GECGVYAYEIAEMKVNQ 119
AE+ +
Sbjct: 151 ATVLRTWQRKAELYCIE 167
>gi|125528275|gb|EAY76389.1| hypothetical protein OsI_04320 [Oryza sativa Indica Group]
Length = 172
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 60 YRVLLVNDNYTPMEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
Y+VLL++D + V L Q E A+ + +G V E AE
Sbjct: 94 YKVLLIDDARHTEKLVEKALPQVVPSVTAEGARQLFHASRQKGAALVIVAVKEHAEFY-- 151
Query: 119 QVMNYSRQHQYPLQCIMEQK 138
RQ L+ +E +
Sbjct: 152 -AQMMVRQ---GLRSAIEPE 167
>gi|193211717|ref|YP_001997670.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobaculum
parvum NCIB 8327]
gi|193085194|gb|ACF10470.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobaculum
parvum NCIB 8327]
Length = 111
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 28/88 (31%)
Query: 22 MSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN 81
M + S M+ + + + + +RV+L ND+ + VI +
Sbjct: 1 MKDYSLNASPMDMIRLDAGNTPDTRTEELVADIDTLDAWRVVLFNDDEHTFDEVIFQIIK 60
Query: 82 FFYKDHETAKCIMLKVHHQGIGECGVYA 109
A+ +VH +G
Sbjct: 61 AVRCPRAIAEKKTWEVHTKGRSIVYAGP 88
>gi|312383259|gb|EFR28416.1| hypothetical protein AND_03674 [Anopheles darlingi]
Length = 322
Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA------ 113
+ +L ND E VI L + + A + + G +++
Sbjct: 224 HCTILYNDETHTFEQVIQTLTSIVKCSQKDAVAYVTSIDRDGRAVVKCAPFDVCCKLKDD 283
Query: 114 -EMKVNQVMNYSRQHQYPLQCIM 135
E K + ++ PL+ +
Sbjct: 284 IENKAIRSSMGTKPS--PLKVTV 304
>gi|20151617|gb|AAM11168.1| LD31957p [Drosophila melanogaster]
Length = 1824
Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKV 117
Y +L ND + VI L + A I+ + +G +E ++KV
Sbjct: 236 QYCTVLYNDESHTFDQVIQTLTKIAKCRAKDAMEIVAAIDREGRAVVKCDTFEECNKLKV 295
Query: 118 NQVMNY---------SRQHQ 128
+ +R +Q
Sbjct: 296 SIENQMILPTSLVSTARNNQ 315
>gi|24642697|ref|NP_573184.1| CG9086 [Drosophila melanogaster]
gi|73622070|sp|Q9VX91|UBR1_DROME RecName: Full=E3 ubiquitin-protein ligase UBR1; AltName:
Full=N-recognin; AltName: Full=Ubiquitin-protein ligase
E3-alpha
gi|22832426|gb|AAF48687.2| CG9086 [Drosophila melanogaster]
gi|201065757|gb|ACH92288.1| FI05389p [Drosophila melanogaster]
Length = 1824
Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKV 117
Y +L ND + VI L + A I+ + +G +E ++KV
Sbjct: 236 QYCTVLYNDESHTFDQVIQTLTKIAKCRAKDAMEIVAAIDREGRAVVKCDTFEECNKLKV 295
Query: 118 NQVMNY---------SRQHQ 128
+ +R +Q
Sbjct: 296 SIENQMILPTSLVSTARNNQ 315
>gi|195480917|ref|XP_002101445.1| GE15629 [Drosophila yakuba]
gi|194188969|gb|EDX02553.1| GE15629 [Drosophila yakuba]
Length = 1821
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 18/55 (32%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
Y +L ND + VI L + A I+ + +G +E
Sbjct: 236 QYCTVLYNDESHTFDQVIQTLTKIAKCRPKDAMEIVAAIDREGRAVVKCDTFEEC 290
>gi|323451978|gb|EGB07853.1| hypothetical protein AURANDRAFT_17179 [Aureococcus anophagefferens]
Length = 84
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 61 RVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
R+LL ND+ E+V ++LQ + A + + H +G+ A +A+ Q
Sbjct: 1 RLLLHNDDVHTFEYVTYMLQKIIPTISNAKAYQLTMTTHCEGVSTVSQTAKPLAQKYCVQ 60
Query: 120 VMN 122
+
Sbjct: 61 LQK 63
>gi|115754810|ref|XP_785942.2| PREDICTED: similar to ubiquitin protein ligase E3 component
n-recognin 2 [Strongylocentrotus purpuratus]
gi|115941797|ref|XP_001192778.1| PREDICTED: similar to ubiquitin protein ligase E3 component
n-recognin 2 [Strongylocentrotus purpuratus]
Length = 921
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 10/105 (9%)
Query: 32 MNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAK 91
K I + +S P +Y +L ND E VI L+ + A
Sbjct: 186 DEPKDIPDDLQGSNSI---------PDVYCTMLFNDEVHTYEQVISSLKKAVECSRKAAL 236
Query: 92 CIMLKVHHQGIGECGVYAYEIAE-MKVNQVMNYSRQHQYPLQCIM 135
V G E K + SR + PL+ ++
Sbjct: 237 QFATIVDKDGRSAVRRGNERDCERAKNVIERSTSRLNSTPLKVLV 281
>gi|194891601|ref|XP_001977518.1| GG18212 [Drosophila erecta]
gi|190649167|gb|EDV46445.1| GG18212 [Drosophila erecta]
Length = 1827
Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 18/55 (32%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
Y +L ND + VI L + A I+ + +G +E
Sbjct: 235 QYCTVLYNDESHTFDQVIQTLTKIAKCRPKDAMEIVAAIDREGRAVVKCDTFEEC 289
>gi|196006856|ref|XP_002113294.1| hypothetical protein TRIADDRAFT_57299 [Trichoplax adhaerens]
gi|190583698|gb|EDV23768.1| hypothetical protein TRIADDRAFT_57299 [Trichoplax adhaerens]
Length = 1445
Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 17/52 (32%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY 108
P LY L ND + VI LQ A I V G GV
Sbjct: 104 PPLYVTTLYNDEVHTYQEVIRQLQLAISCTELQASQIAGIVDRTGRARIGVG 155
>gi|312078026|ref|XP_003141559.1| hypothetical protein LOAG_05973 [Loa loa]
gi|307763278|gb|EFO22512.1| hypothetical protein LOAG_05973 [Loa loa]
Length = 1011
Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMK 116
LY+ +L+ND + VI L + + A + + +G + + K
Sbjct: 223 PLYQTILLNDETHTFDSVIRALNLSIHCNQLQAMQLATVIDREGRASVRNGNIDYCIKAK 282
Query: 117 VNQVMNYSRQHQY 129
R +
Sbjct: 283 DEIQRRTQRDSNH 295
>gi|324518050|gb|ADY46989.1| E3 ubiquitin-protein ligase ubr-1 [Ascaris suum]
Length = 272
Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
++ + R +P Y+ +L ND + VI L + + + A +
Sbjct: 116 WPHGNDLPEIVSRVDLDPSLPP-YQTILYNDETHTYDSVIRALNLSIHCNEQQAMLLATI 174
Query: 97 VHHQGIGECGVYAYEIAEMKVNQVMN 122
V +G + E ++
Sbjct: 175 VDREGRSSVRAGSNEFCARAKEEIQR 200
>gi|297737852|emb|CBI27053.3| unnamed protein product [Vitis vinifera]
Length = 127
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 15 RDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEF 74
R ++A+ + + + I + +SE ++ YRV+L NDNY E+
Sbjct: 35 RSFLMAISASGPGKGGLLERPVIEKVTPGRESEFDLRKSRKIAPPYRVILHNDNYNKREY 94
Query: 75 VIHVLQNFFYKDHETAKCIMLKVHHQG 101
V+ VL A+ +++ G
Sbjct: 95 VVQVLM------KADAEDHCMQLRGNG 115
>gi|296213775|ref|XP_002753416.1| PREDICTED: E3 ubiquitin-protein ligase UBR1 [Callithrix jacchus]
Length = 1747
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ + Y +L ND + + VI+ LQ + A+ + +G V Y +
Sbjct: 221 KKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDREGRRAVKVGGYAACQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|238565884|ref|XP_002385953.1| hypothetical protein MPER_16009 [Moniliophthora perniciosa FA553]
gi|215436436|gb|EEB86883.1| hypothetical protein MPER_16009 [Moniliophthora perniciosa FA553]
Length = 151
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
+ + N D ++ S+ + Y V++ ND+ + VI ++ + + E A
Sbjct: 21 DYSPDEPSVPANEADLRLQPSADPMMKDQYCVIVWNDDKHSFDEVIKLICDLTGRSREEA 80
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSR 125
+ +V G V +++ ++
Sbjct: 81 AEMTQRVDENGREII------DMSTDVPRLLEMAQ 109
>gi|110598294|ref|ZP_01386569.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobium
ferrooxidans DSM 13031]
gi|110340102|gb|EAT58602.1| ATP-dependent Clp protease adaptor protein ClpS [Chlorobium
ferrooxidans DSM 13031]
Length = 105
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 18/54 (33%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
YRV+L ND + VI + A+ +VH +G
Sbjct: 33 YRVVLFNDEEHSFDEVIDQIIKAIRCSRSKAERHTWEVHTRGRSIVFAGTMAEC 86
>gi|66504949|ref|XP_394362.2| PREDICTED: e3 ubiquitin-protein ligase UBR2-like [Apis mellifera]
Length = 1779
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
Y +L ND + VI L A + V G ++ + N+
Sbjct: 248 YCTVLFNDETHTFDQVISTLTRVMNCSQRDALEFVTNVDRDGRAIVKCAEFQQCKDLQNE 307
Query: 120 VMNY-SRQHQYPLQCIM 135
+ + SR L+ ++
Sbjct: 308 IEKFTSRHSNRALKVLV 324
>gi|119510879|ref|ZP_01630003.1| ATP-dependent Clp protease adaptor protein ClpS [Nodularia
spumigena CCY9414]
gi|119464488|gb|EAW45401.1| ATP-dependent Clp protease adaptor protein ClpS [Nodularia
spumigena CCY9414]
Length = 63
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 72 MEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
ME V+ L A IM++ H G+ A E AE + + +
Sbjct: 1 MEHVVQSLITTVPSLTQPQAVSIMMEAHTNGMALVITCAQEHAEFYCETLKS------HG 54
Query: 131 LQCIMEQK 138
L +E
Sbjct: 55 LSSTIEPD 62
>gi|149192135|ref|ZP_01870357.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio shilonii
AK1]
gi|148834038|gb|EDL51053.1| ATP-dependent Clp protease adaptor protein ClpS [Vibrio shilonii
AK1]
Length = 60
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 40 FDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHET 89
D + +KV P +Y V+L ND+YTPM+FV+ +L+ FF+
Sbjct: 8 VTPDSDLLEKEKTKVEPPAMYNVVLNNDDYTPMDFVVEILERFFHSTKTK 57
>gi|255031453|gb|AAB42328.2| Hypothetical protein C32E8.11 [Caenorhabditis elegans]
Length = 2033
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 45 DSEVRFSSK-VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+ + + + Y +L ND E VI VL+ + + + A + V +G
Sbjct: 181 EIFEKMKPEVTNEAQQYLTVLYNDETHTYESVIKVLELYIHCTKDQAMLVATIVDREGRS 240
Query: 104 ECGVYAYEIAEMKVNQVM-NYSRQ---------HQYPLQCIM 135
+ + + V +R H PL +
Sbjct: 241 AVKLGSKADCTKAKDDVQRKTARDPTSIRRSSNHNLPLSVKV 282
>gi|133902360|ref|NP_491231.2| hypothetical protein C32E8.11 [Caenorhabditis elegans]
gi|306526247|sp|P91133|UBR1_CAEEL RecName: Full=E3 ubiquitin-protein ligase ubr-1; AltName:
Full=N-recognin-1; AltName: Full=Ubiquitin-protein
ligase E3-alpha
Length = 2058
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 45 DSEVRFSSK-VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+ + + + Y +L ND E VI VL+ + + + A + V +G
Sbjct: 206 EIFEKMKPEVTNEAQQYLTVLYNDETHTYESVIKVLELYIHCTKDQAMLVATIVDREGRS 265
Query: 104 ECGVYAYEIAEMKVNQVM-NYSRQ---------HQYPLQCIM 135
+ + + V +R H PL +
Sbjct: 266 AVKLGSKADCTKAKDDVQRKTARDPTSIRRSSNHNLPLSVKV 307
>gi|329663812|ref|NP_001192826.1| E3 ubiquitin-protein ligase UBR1 [Bos taurus]
gi|297479564|ref|XP_002690859.1| PREDICTED: hypothetical protein [Bos taurus]
gi|296483294|gb|DAA25409.1| hypothetical protein BOS_10698 [Bos taurus]
Length = 1753
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 52 SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
K Y +L ND + + VI+ LQ + A+ + +G A+
Sbjct: 218 QKREKNDRYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQMHTTAIDKEGRRAVKAGAFA 277
Query: 112 IAEMKVNQVMNYSRQ-HQYPLQCIM 135
+ + ++S Q+PL +
Sbjct: 278 ACQEAKEDIKSHSENVSQHPLHVEV 302
>gi|145326694|ref|NP_001077794.1| unknown protein [Arabidopsis thaliana]
gi|332196704|gb|AEE34825.1| ATP-dependent Clp protease adaptor protein ClpS [Arabidopsis
thaliana]
Length = 129
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 19 LALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHV 78
L+ + + ++K I + +SE ++ YRV+L NDN+ E+V+ V
Sbjct: 41 LSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQV 100
Query: 79 LQNFFYKDHETAKCIMLKVHHQG 101
L A+ +++ G
Sbjct: 101 LM------KADAEQHCMQLRGNG 117
>gi|311244899|ref|XP_003121614.1| PREDICTED: e3 ubiquitin-protein ligase UBR1-like [Sus scrofa]
Length = 1360
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
Y +L ND + + VI+ LQ + A+ + +G A+ +
Sbjct: 184 EKNDRYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKTGAFSACQ 243
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 244 EAKEDIKSHSENVSQHPLHVEV 265
>gi|114656626|ref|XP_510341.2| PREDICTED: ubiquitin protein ligase E3 component n-recognin 1 [Pan
troglodytes]
Length = 1957
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G AY +
Sbjct: 411 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQ 470
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 471 EAKEDIKSHSENVSQHPLHVEV 492
>gi|308485054|ref|XP_003104726.1| hypothetical protein CRE_23977 [Caenorhabditis remanei]
gi|308257424|gb|EFP01377.1| hypothetical protein CRE_23977 [Caenorhabditis remanei]
Length = 2085
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 13/112 (11%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
K + D + S+ + +L ND E VI+VL+ + + + A +
Sbjct: 199 KDDLQLPDFFEKLKTESSTDNQQC---LTVLYNDETHTYESVINVLELYIHCTKDQAMLV 255
Query: 94 MLKVHHQGIGECGVY-------AYEIAEMKVNQVMNYSRQ---HQYPLQCIM 135
V +G + E + K ++ N R+ H PL +
Sbjct: 256 ATIVDREGRSAVKLGNKTDCTRTKEDVQKKSSRGQNVIRRSSTHHLPLSVKV 307
>gi|313142600|ref|ZP_07804793.1| ERD1 protein [Helicobacter canadensis MIT 98-5491]
gi|313131631|gb|EFR49248.1| ERD1 protein [Helicobacter canadensis MIT 98-5491]
Length = 35
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 104 ECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
CG+Y Y+IAE K QV +++ Q+PL+ I+E+
Sbjct: 1 MCGIYPYDIAETKAMQVRKMAKEKQFPLRAILEK 34
>gi|148696076|gb|EDL28023.1| ubiquitin protein ligase E3 component n-recognin 1 [Mus musculus]
Length = 1618
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G Y +
Sbjct: 82 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYATCQ 141
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 142 EAKEDIKSHSENVSQHPLHVEV 163
>gi|297296257|ref|XP_001105721.2| PREDICTED: e3 ubiquitin-protein ligase UBR1-like [Macaca mulatta]
Length = 1782
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G AY +
Sbjct: 254 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQ 313
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 314 EAKEDIKSHSENVSQHPLHVEV 335
>gi|193638845|ref|XP_001952747.1| PREDICTED: e3 ubiquitin-protein ligase UBR1-like [Acyrthosiphon
pisum]
Length = 1814
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKV 117
+ +L ND + VI L F + + + +G + ++K
Sbjct: 242 RFCTVLYNDETHTFDQVITTLTRFIKCPQRESIDYVTSIDREGRAVVKCAGFVQCKDLKE 301
Query: 118 NQVMNYSRQHQYPLQCIM 135
SR PL+ ++
Sbjct: 302 EIEKFTSRHGGKPLKTVV 319
>gi|62635500|gb|AAX90619.1| ubiquitin protein ligase E3 component n-recognin 1 [Mus musculus]
Length = 1757
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G Y +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYATCQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|73622072|sp|O70481|UBR1_MOUSE RecName: Full=E3 ubiquitin-protein ligase UBR1; AltName:
Full=N-recognin-1; AltName: Full=Ubiquitin-protein
ligase E3-alpha-1; AltName: Full=Ubiquitin-protein
ligase E3-alpha-I
gi|3170887|gb|AAC40165.1| ubiquitin-protein ligase E3-alpha [Mus musculus]
Length = 1757
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G Y +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYATCQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|154091026|ref|NP_033487.2| E3 ubiquitin-protein ligase UBR1 [Mus musculus]
gi|123857849|emb|CAM19009.1| ubiquitin protein ligase E3 component n-recognin 1 [Mus musculus]
gi|123858222|emb|CAM21400.1| ubiquitin protein ligase E3 component n-recognin 1 [Mus musculus]
Length = 1757
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G Y +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYATCQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|291403146|ref|XP_002717808.1| PREDICTED: ubiquitin protein ligase E3 component n-recognin 1
[Oryctolagus cuniculus]
Length = 1740
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G AY +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|149023072|gb|EDL79966.1| rCG26968 [Rattus norvegicus]
Length = 1568
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 52 SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+ + Y +L ND + + VI+ LQ + A+ + +G Y
Sbjct: 79 QRREKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYS 138
Query: 112 IAEMKVNQVMNYSRQ-HQYPLQCIM 135
+ + ++S Q+PL +
Sbjct: 139 ACQEAKEDIKSHSENVSQHPLHVEV 163
>gi|27451604|gb|AAO14997.1| UBR1 E3a ligase [Homo sapiens]
Length = 1709
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G AY +
Sbjct: 204 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQ 263
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 264 EAKEDIKSHSENVSQHPLHVEV 285
>gi|296010823|ref|NP_001171543.1| ubiquitin protein ligase E3 component n-recognin 1 [Rattus
norvegicus]
gi|295443877|dbj|BAJ06627.1| UBR1 [Rattus norvegicus]
Length = 1757
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 52 SKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+ + Y +L ND + + VI+ LQ + A+ + +G Y
Sbjct: 218 QRREKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYS 277
Query: 112 IAEMKVNQVMNYSRQ-HQYPLQCIM 135
+ + ++S Q+PL +
Sbjct: 278 ACQEAKEDIKSHSENVSQHPLHVEV 302
>gi|332026215|gb|EGI66357.1| E3 ubiquitin-protein ligase UBR2 [Acromyrmex echinatior]
Length = 1800
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVN 118
Y +L ND + + VI++L + A + V +G ++ ++K
Sbjct: 256 YCTVLFNDEHHTFDQVINMLIRVLKCSQKEAIEYVTGVDREGRTVIKCSGFKPCTDLKGE 315
Query: 119 QVMNYSRQHQYPLQCIM 135
R PL+ ++
Sbjct: 316 VEKFTYRHSNRPLKVLV 332
>gi|28372497|ref|NP_777576.1| E3 ubiquitin-protein ligase UBR1 [Homo sapiens]
gi|73622071|sp|Q8IWV7|UBR1_HUMAN RecName: Full=E3 ubiquitin-protein ligase UBR1; AltName:
Full=N-recognin-1; AltName: Full=Ubiquitin-protein
ligase E3-alpha-1; AltName: Full=Ubiquitin-protein
ligase E3-alpha-I
gi|27434484|gb|AAL32103.1| ubiquitin ligase E3 alpha-I [Homo sapiens]
gi|109731059|gb|AAI13508.1| Ubiquitin protein ligase E3 component n-recognin 1 [Homo sapiens]
gi|109731289|gb|AAI13506.1| Ubiquitin protein ligase E3 component n-recognin 1 [Homo sapiens]
gi|119612990|gb|EAW92584.1| ubiquitin protein ligase E3 component n-recognin 1 [Homo sapiens]
Length = 1749
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G AY +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|198467263|ref|XP_001354328.2| GA21530 [Drosophila pseudoobscura pseudoobscura]
gi|198149416|gb|EAL31381.2| GA21530 [Drosophila pseudoobscura pseudoobscura]
Length = 1828
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVN 118
+ +L ND + VI L H+ A I+ + +G ++ E+K
Sbjct: 228 FCTVLYNDESHTFDQVIQTLTKIAKCRHKEAMEIVAAIDREGRAVVKCDTFKACNELKTA 287
Query: 119 QVMNY 123
Sbjct: 288 IENQM 292
>gi|195173871|ref|XP_002027708.1| GL22690 [Drosophila persimilis]
gi|194114654|gb|EDW36697.1| GL22690 [Drosophila persimilis]
Length = 1829
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVN 118
+ +L ND + VI L H+ A I+ + +G ++ E+K
Sbjct: 228 FCTVLYNDESHTFDQVIQTLTKIAKCRHKEAMEIVAAIDREGRAVVKCDTFKACNELKTA 287
Query: 119 QVMNY 123
Sbjct: 288 IENQM 292
>gi|195393476|ref|XP_002055380.1| GJ18821 [Drosophila virilis]
gi|194149890|gb|EDW65581.1| GJ18821 [Drosophila virilis]
Length = 1858
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVN 118
+ +L ND + VI+ L H A I+ + +G ++ E+K
Sbjct: 254 FCTVLYNDESHTFDQVINTLTKIAKCRHRDAMEIVAAIDREGRAVVKCDTFKECNELKTA 313
Query: 119 QVMN 122
Sbjct: 314 IENQ 317
>gi|281338188|gb|EFB13772.1| hypothetical protein PANDA_001025 [Ailuropoda melanoleuca]
Length = 1726
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G A+ +
Sbjct: 194 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAFAACQ 253
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 254 EAKEDIKSHSENVSQHPLHVEV 275
>gi|237844445|ref|XP_002371520.1| ATP-dependent Clp protease adaptor domain-containing protein
[Toxoplasma gondii ME49]
gi|211969184|gb|EEB04380.1| ATP-dependent Clp protease adaptor domain-containing protein
[Toxoplasma gondii ME49]
gi|221481196|gb|EEE19597.1| ATP-dependent Clp protease adaptor domain-containing protein,
putative [Toxoplasma gondii GT1]
gi|221501744|gb|EEE27504.1| ATP-dependent Clp protease adaptor domain-containing protein,
putative [Toxoplasma gondii VEG]
Length = 389
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGEC 105
+ ++++ ++V+L ND + V +L + A I ++ H G+
Sbjct: 262 QAERRARLK---AWQVVLHNDEIHAIPHVTDLLVDAVPSLTKAKAHSITVQAHKTGLALV 318
Query: 106 GVYAYEIA 113
E A
Sbjct: 319 LRTWREKA 326
>gi|301754797|ref|XP_002913235.1| PREDICTED: e3 ubiquitin-protein ligase UBR1-like [Ailuropoda
melanoleuca]
Length = 1753
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G A+ +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAFAACQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|74000314|ref|XP_544645.2| PREDICTED: similar to ubiquitin protein ligase E3 component
n-recognin 1 [Canis familiaris]
Length = 1753
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G A+ +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAFAACQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|149692025|ref|XP_001503251.1| PREDICTED: ubiquitin protein ligase E3 component n-recognin 1
[Equus caballus]
Length = 1753
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G A+ +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAFAACQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|84998164|ref|XP_953803.1| hypothetical protein [Theileria annulata]
gi|71532865|emb|CAI73125.2| hypothetical protein, conserved [Theileria annulata]
Length = 133
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
+RV+L ND+ +V + A I L+ H G E + AE+
Sbjct: 70 WRVILYNDDIHNFMYVTESISKCVPQLPLAVAHLITLEAHKNGQAEIIRTWKDKAELYC 128
>gi|260836833|ref|XP_002613410.1| hypothetical protein BRAFLDRAFT_227182 [Branchiostoma floridae]
gi|229298795|gb|EEN69419.1| hypothetical protein BRAFLDRAFT_227182 [Branchiostoma floridae]
Length = 1679
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY---EIAEMK 116
Y +L ND E VI+ L + + A V +G + A
Sbjct: 158 YVTMLFNDEIHTYEQVINALTKAINCESKEAVEFATVVDREGRSSVRYGNRKSCDEART- 216
Query: 117 VNQVMNYSRQHQYPLQCIM 135
V Q + R PL+ +
Sbjct: 217 VIQSTSSVRSK--PLKVEV 233
>gi|74205565|dbj|BAE21081.1| unnamed protein product [Mus musculus]
Length = 850
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G Y +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYATCQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|60688315|gb|AAH90969.1| Ubr1 protein [Mus musculus]
Length = 857
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G Y +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYATCQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|74184956|dbj|BAE39093.1| unnamed protein product [Mus musculus]
Length = 849
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G Y +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYATCQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|26354613|dbj|BAC40933.1| unnamed protein product [Mus musculus]
Length = 849
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G Y +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYATCQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|72679672|gb|AAI00462.1| Ubr1 protein [Mus musculus]
Length = 859
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G Y +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYATCQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|126281864|ref|XP_001364154.1| PREDICTED: similar to ubiquitin ligase E3 alpha-I [Monodelphis
domestica]
Length = 1756
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
E + L +E++ K Y +L ND + + VI+ LQ + A+ +
Sbjct: 212 EEEKDLPTELQLGEKTER---YYCVLFNDEHHSYDHVIYSLQKALKCELTEAQVHTTAID 268
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQ-HQYPLQCIM 135
+G + + + +S Q+PL +
Sbjct: 269 KEGRRAVKLGSGVHCREAKENIKFHSENVSQHPLHVEV 306
>gi|3236430|gb|AAC23678.1| ubiquitin-protein ligase E3-alpha [Mus musculus]
Length = 446
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G Y +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYATCQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|158258469|dbj|BAF85205.1| unnamed protein product [Homo sapiens]
Length = 1013
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G AY +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|124784752|gb|ABN14993.1| ubiquitin ligase E3 alpha-II [Taenia asiatica]
Length = 264
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGV-YAYEIAEMK 116
K Y V+L N+ + E VI +++ + A + V+ G +IA K
Sbjct: 77 KQYIVVLYNNEFHNYEDVIRIVRRVDGCTSKQATLFAVIVNRDGRTPLLTNLTLQIAAQK 136
Query: 117 VNQVMNY--SRQHQYPLQ-CIMEQ 137
+V SR PL+ +MEQ
Sbjct: 137 AARVSQSPGSRHLVRPLRAAVMEQ 160
>gi|195047781|ref|XP_001992412.1| GH24736 [Drosophila grimshawi]
gi|193893253|gb|EDV92119.1| GH24736 [Drosophila grimshawi]
Length = 1738
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ +L ND + VI+ L H+ A I+ + +G ++
Sbjct: 227 FCTVLYNDESHTFDQVINTLTKIARCRHKDAMEIVAAIDREGRAVVKCDTFKEC 280
>gi|325114160|emb|CBZ49718.1| putative ATP-dependent Clp protease adaptor domain-containing
protein [Neospora caninum Liverpool]
Length = 156
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 45 DSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIG 103
D + + + + K ++V+L ND+ + V +L + A I + H G+
Sbjct: 28 DDQKKQAERRERLKAWQVVLHNDDIHAIPHVTDLLVDAVPSLTKAKAHSITVHAHKTGLA 87
Query: 104 ECGVYAYEIA 113
E A
Sbjct: 88 LILRTWREKA 97
>gi|194379616|dbj|BAG63774.1| unnamed protein product [Homo sapiens]
Length = 1070
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G AY +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|14042752|dbj|BAB55380.1| unnamed protein product [Homo sapiens]
Length = 811
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G AY +
Sbjct: 18 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQ 77
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 78 EAKEDIKSHSENVSQHPLHVEV 99
>gi|297696447|ref|XP_002825405.1| PREDICTED: e3 ubiquitin-protein ligase UBR1-like [Pongo abelii]
Length = 1070
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
+ Y +L ND + + VI+ LQ + A+ + +G AY +
Sbjct: 221 EKNERYYCVLFNDEHHSYDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGAYAACQ 280
Query: 115 MKVNQVMNYSRQ-HQYPLQCIM 135
+ ++S Q+PL +
Sbjct: 281 EAKEDIKSHSENVSQHPLHVEV 302
>gi|195448036|ref|XP_002071481.1| GK25116 [Drosophila willistoni]
gi|194167566|gb|EDW82467.1| GK25116 [Drosophila willistoni]
Length = 1904
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 19/55 (34%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ +L ND + VI L H+ A I+ + +G ++
Sbjct: 299 QFCTVLYNDESHTFDQVIQTLTKIAKCRHKDAMEIVAAIDREGRAVVKCDTFKEC 353
>gi|95007079|emb|CAJ20295.1| ATP-dependent Clp protease adaptor protein C,putative [Toxoplasma
gondii RH]
Length = 226
Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 47 EVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGEC 105
+ ++++ ++V+L ND + V +L + A I ++ H G+
Sbjct: 99 QAERRARLK---AWQVVLHNDEIHAIPHVTDLLVDAVPSLTKAKAHSITVQAHKTGLALV 155
Query: 106 GVYAYEIA 113
E A
Sbjct: 156 LRTWREKA 163
>gi|309360562|emb|CAP31056.2| hypothetical protein CBG_12009 [Caenorhabditis briggsae AF16]
Length = 2072
Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 37 IAEFDNCLDSEVRFSSKVRVP---KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
I D+ E K VP + + +L ND E VI VL+ + + + A +
Sbjct: 212 ITHKDDLTLPEAFEEFKPEVPVDSQQFLTVLYNDETHTYESVIKVLELYIHCTKDQAMLV 271
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQ-----------VMNYSRQHQYPLQCIM 135
V +G + K + + + H PL +
Sbjct: 272 ATIVDREGRSAVKLGNKVDC-TKAKEDVQKKTSRDSLSIRRASTHHLPLSVKV 323
>gi|268560834|ref|XP_002646302.1| Hypothetical protein CBG12009 [Caenorhabditis briggsae]
Length = 2023
Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 37 IAEFDNCLDSEVRFSSKVRVP---KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
I D+ E K VP + + +L ND E VI VL+ + + + A +
Sbjct: 196 ITHKDDLTLPEAFEEFKPEVPVDSQQFLTVLYNDETHTYESVIKVLELYIHCTKDQAMLV 255
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQ-----------VMNYSRQHQYPLQCIM 135
V +G + K + + + H PL +
Sbjct: 256 ATIVDREGRSAVKLGNKVDC-TKAKEDVQKKTSRDSLSIRRASTHHLPLSVKV 307
>gi|195131703|ref|XP_002010285.1| GI14775 [Drosophila mojavensis]
gi|193908735|gb|EDW07602.1| GI14775 [Drosophila mojavensis]
Length = 1895
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
+ +L ND + VI+ L + A I+ + +G ++
Sbjct: 284 FCTVLYNDESHTFDQVINTLTKIAKCRQKDAMEIVAAIDREGRAVVKCDTFKKC 337
>gi|328876777|gb|EGG25140.1| ubiquitin ligase E3 alpha [Dictyostelium fasciculatum]
Length = 1884
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
Y VL+ ND++ + VI L+ A VH G + A
Sbjct: 527 YGVLIYNDDHNSFQSVIGELKAAIGLQRGPATDYAHYVHMNGKCIVFIGARSEC 580
>gi|47230163|emb|CAG10577.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1710
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 43 CLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ + + +Y +L ND + + V++ LQ + A+ +G
Sbjct: 204 EENLSAELQPRTK-DNMYYCVLYNDEHHSFDHVVYSLQRSINCEEGVAEMHTTVTDKEGR 262
Query: 103 GECGVYAYEIAEMKVNQVMNYSRQH--QYPLQCIM 135
+ ++ S +H PL+ +
Sbjct: 263 RAVKMGTLRSC-QHTKDLIKSSSEHISLQPLRVEI 296
>gi|224051209|ref|XP_002199185.1| PREDICTED: ubiquitin protein ligase E3 component n-recognin 1
[Taeniopygia guttata]
Length = 1800
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 39 EFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVH 98
E + L E+ KV Y +L ND + + VI+ LQ + A+ +
Sbjct: 253 EEEKELPVELTIREKVDS---YYCVLFNDEHHSYDHVIYSLQRALGCELGEAQLHTTAID 309
Query: 99 HQGIGECGVYAYEIAEMKVNQVMNYSRQ-HQYPLQCIM 135
+G Y + ++ +S Q PL +
Sbjct: 310 KEGRRAVKAGHYASCQEAKEEIKRHSENVSQRPLHVEV 347
>gi|118091680|ref|XP_421165.2| PREDICTED: similar to ubiquitin ligase E3 alpha-I [Gallus gallus]
Length = 1823
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
Y +L ND + + VI+ LQ + A+ + +G Y + +
Sbjct: 295 YYCVLFNDEHHSYDHVIYSLQRALGCELGEAQLHTTAIDKEGRRAVKAGHYASCQEAKEE 354
Query: 120 VMNYSRQ-HQYPLQCIM 135
+ +S Q PL +
Sbjct: 355 IKRHSENVSQRPLHVEV 371
>gi|170064939|ref|XP_001867735.1| E3 ubiquitin-protein ligase UBR1 [Culex quinquefasciatus]
gi|167882138|gb|EDS45521.1| E3 ubiquitin-protein ligase UBR1 [Culex quinquefasciatus]
Length = 703
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 71 PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-------EMKVNQVMNY 123
P VI L + + A + + +G +EI E KV +
Sbjct: 44 PRGEVIQTLTSMVKCTQKEAIEYVTSIDREGRAVVKCATFEICKKLKEDIENKVIRSTMT 103
Query: 124 SRQHQYPLQCIM 135
++ PL+ +
Sbjct: 104 AKAS--PLKVTV 113
>gi|326920513|ref|XP_003206516.1| PREDICTED: e3 ubiquitin-protein ligase UBR1-like [Meleagris
gallopavo]
Length = 1806
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
Y +L ND + + VI+ LQ + A+ + +G Y + +
Sbjct: 278 YYCVLFNDEHHSYDHVIYSLQRALGCELGEAQLHTTAIDKEGRRAVKAGHYASCQEAKEE 337
Query: 120 VMNYSRQ-HQYPLQCIM 135
+ +S Q PL +
Sbjct: 338 IKRHSENVSQRPLHVEV 354
>gi|307104985|gb|EFN53236.1| hypothetical protein CHLNCDRAFT_137134 [Chlorella variabilis]
Length = 161
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 6/105 (5%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
G D+ + +RVLL++ + V+ + D A+ +
Sbjct: 59 PDGTPLTDSAGSKLDSNGGRGLGGGSWRVLLLDSDKHVEARVVDAIMAVVGADQAHAQNV 118
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQK 138
G E AE Q+ + ME
Sbjct: 119 FHTARSIGQAIITCAPKEHAEFYAQQLWQR------GCKVNMEPD 157
>gi|302673572|ref|XP_003026472.1| hypothetical protein SCHCODRAFT_79680 [Schizophyllum commune H4-8]
gi|300100155|gb|EFI91569.1| hypothetical protein SCHCODRAFT_79680 [Schizophyllum commune H4-8]
Length = 1811
Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETA 90
+ + + N + V+ S+ ++ ++L ND+ + V VL++ + E A
Sbjct: 229 DYSPEEPSVPANEAELCVQPSADPMTKDVFSIVLWNDDKHSYDEVAKVLRDLLGRSREEA 288
Query: 91 KCIMLKVHHQGIGEC-----GVYAYEIAEM 115
I+ + G EIA+
Sbjct: 289 SEILRNMEENGREVIEMNSNATRMLEIAQT 318
>gi|301623661|ref|XP_002941132.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase
UBR1-like [Xenopus (Silurana) tropicalis]
Length = 1763
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
Y +L ND + + I+ LQ D + A+ + +G E
Sbjct: 219 QYYCVLYNDEHHTYDHFIYSLQRSLGCDQKEAQTLTSAAEREGRKAVKKGTLEQ----CQ 274
Query: 119 QVMNYSRQH 127
+V + +
Sbjct: 275 EVTESLKAN 283
>gi|284051855|ref|ZP_06382065.1| ATP-dependent Clp protease adaptor protein ClpS [Arthrospira
platensis str. Paraca]
Length = 49
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
+ A + +VH++G V E AE+ Q+
Sbjct: 1 MTSDQAWELTNRVHYEGQATVWVGPLEQAELYHTQL 36
>gi|126697028|ref|YP_001091914.1| hypothetical protein P9301_16901 [Prochlorococcus marinus str. MIT
9301]
gi|126544071|gb|ABO18313.1| Hypothetical protein P9301_16901 [Prochlorococcus marinus str. MIT
9301]
Length = 63
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 72 MEFVIHVL-QNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
ME+V L + + A IML+ H+ G+G V E AE + +
Sbjct: 1 MEYVTISLREVVPQLSEQDAIAIMLEAHNTGVGLVIVCDLEPAEFYSESLKSK------G 54
Query: 131 LQCIMEQK 138
+ +E++
Sbjct: 55 ISSSIEKE 62
>gi|331214580|ref|XP_003319971.1| hypothetical protein PGTG_00883 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309298961|gb|EFP75552.1| hypothetical protein PGTG_00883 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 2049
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 18/60 (30%)
Query: 50 FSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYA 109
+R + V+L ND VI + A I + +G V +
Sbjct: 401 TDHNLRGSGPWGVVLWNDERHSYAQVIDQVSKATGCTRAEALRIANTIDTKGREVIQVSS 460
>gi|327259555|ref|XP_003214602.1| PREDICTED: e3 ubiquitin-protein ligase UBR1-like [Anolis
carolinensis]
Length = 1809
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 19/56 (33%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
Y ++ ND + + VI+ LQ + A+ + +G Y
Sbjct: 276 EKTDKYYCVVFNDEHHSYDHVIYSLQRTLGCELGEAQLYTTAIDKEGRKAVKKGPY 331
>gi|315080002|gb|EFT51978.1| conserved domain protein [Propionibacterium acnes HL078PA1]
Length = 47
Score = 47.1 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 89 TAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIMEQ 137
A +M++VH+QG + E E+ V+ + H Y LQ +E+
Sbjct: 1 RATQLMIQVHNQGRATVAEGSKEEMEVAVHAM------HGYGLQASVEK 43
>gi|198416904|ref|XP_002123634.1| PREDICTED: similar to LOC568531 protein, partial [Ciona
intestinalis]
Length = 825
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 20/64 (31%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
+ ++ ND ++VI VL + + A + +G +
Sbjct: 201 KFATVVFNDESHTFDYVIGVLSHAVHCTSNRAADFATVIDREGRSTVLCGSKTQCRNAKE 260
Query: 119 QVMN 122
V N
Sbjct: 261 LVTN 264
>gi|150951625|ref|XP_001387973.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388750|gb|EAZ63950.2| predicted protein [Pichia stipitis CBS 6054]
Length = 1802
Score = 47.1 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
L+ ++L ND + E A I +++ G G
Sbjct: 251 LWYLILWNDERHDFPQAQEAIILASGVSEEKAHKIATQINESGRGI 296
>gi|241727050|ref|XP_002404499.1| ubiquitin ligase E3 alpha, putative [Ixodes scapularis]
gi|215505444|gb|EEC14938.1| ubiquitin ligase E3 alpha, putative [Ixodes scapularis]
Length = 1634
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 24/103 (23%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA-EMKVN 118
+ +L ND E VI L H A V +G ++ +
Sbjct: 149 FVTMLFNDEAHTYEQVIQTLNRAIECTHREAIEYATTVDREGRSLVRSSSFADCLQTFAM 208
Query: 119 QVMNYSR----------------------QHQYPL-QCIMEQK 138
+++++ + + +PL +C+M
Sbjct: 209 RLLSWLQGFLSQCQAFRLVFSGVMLEPTPEEGFPLVRCVMRAD 251
>gi|323507575|emb|CBQ67446.1| related to ubiquitin-protein ligase e3 component [Sporisorium
reilianum]
Length = 2223
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 7/101 (6%)
Query: 20 ALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSS--KVRVPKLYRVLLVNDNYTPMEFVIH 77
L S MA S M + + LD+ S + + VLL ND VI
Sbjct: 407 NLASENVMAASEMLSASASRRKSSLDTAKSQSPPEATNANRQFAVLLWNDEKHSFSQVID 466
Query: 78 VLQNFFYKDHETAKCIMLKVHHQGIGECGVYA-----YEIA 113
++ + + AK + +V G V Y+IA
Sbjct: 467 IVTDATGRSEHDAKGVAERVDQHGREIVEVGPDLRRLYQIA 507
>gi|257056893|ref|YP_003134725.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharomonospora
viridis DSM 43017]
gi|256586765|gb|ACU97898.1| ATP-dependent Clp protease adaptor protein ClpS [Saccharomonospora
viridis DSM 43017]
Length = 88
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVY-AYEIAEMKV 117
+ V L +D+ + VL++ D ET + + G + AE V
Sbjct: 9 RWHVDLHHDDVNRYPGMAFVLRHVCGLDKETGVALADEAQRHGTARVLSCDTRDDAERIV 68
Query: 118 NQVMNYS 124
++
Sbjct: 69 AEIQLLG 75
>gi|313221077|emb|CBY31907.1| unnamed protein product [Oikopleura dioica]
Length = 1879
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
++L ND + V +L+ E A + +G + E
Sbjct: 251 LILYNDEVHSYDQVERMLKESVNATTEQAHIYATHIDKKGRTSLKTGSRADCE 303
>gi|281202040|gb|EFA76245.1| hypothetical protein PPL_10006 [Polysphondylium pallidum PN500]
Length = 1263
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFY-----KDHETAKCIMLKVHHQGIGECGVYAYEIA 113
Y VL+ ND+ + VI L+ + VH + +Y+
Sbjct: 431 QYGVLIYNDDVNSFDGVISSLKKSIPDVPAIVTSQNCTDYAHYVHMNDRCVIFIGSYDQC 490
Query: 114 E 114
+
Sbjct: 491 Q 491
>gi|328855830|gb|EGG04954.1| hypothetical protein MELLADRAFT_108006 [Melampsora larici-populina
98AG31]
Length = 2039
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
K + + ++L ND VI + A I +V +G
Sbjct: 414 EEKPKGAGPWGLVLWNDEKHSYAQVIDQVSRATGCSRREALEIANRVDSKGR 465
>gi|164658037|ref|XP_001730144.1| hypothetical protein MGL_2526 [Malassezia globosa CBS 7966]
gi|159104039|gb|EDP42930.1| hypothetical protein MGL_2526 [Malassezia globosa CBS 7966]
Length = 1847
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 17/129 (13%)
Query: 18 ILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVR-------VPKLYRVLLVNDNYT 70
+ D + K F+N ++ + + P L+ LL ND
Sbjct: 251 APKQTQLVMGPDVVDSIKRQPSFENAFPAKGKARQDMSDGAERDPQPPLFVALLWNDEKH 310
Query: 71 PMEFV-IHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQ- 128
V +L+ + A+ V G V +++ +R+
Sbjct: 311 SFNEVSDKILEVCTTMTPKDARNFAEAVDRHGRQVVA------MSDDVRRLVLMARRIGV 364
Query: 129 -YPLQCIME 136
Y L ++
Sbjct: 365 IY-LLVTVQ 372
>gi|313231678|emb|CBY08791.1| unnamed protein product [Oikopleura dioica]
Length = 2242
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
++L ND + V +L+ E A + +G + E
Sbjct: 613 LILYNDEVHSYDQVERMLKESVNATTEQAHIYATHIDKKGRTSLKTGSRADCE 665
>gi|219114487|ref|XP_002176414.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402660|gb|EEC42650.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 214
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Query: 28 ADSRMNKKGIAEFD-NCLDSEVRFSSKVRVPKLYRVLL----VNDNYTPMEFVIHVLQNF 82
+D+ + L+ + + + +LL + + +V L+
Sbjct: 71 SDNDRTNDDEDNTEYPDLEYLQDSAESREINDPFHILLMGSTFDKPKITVTYVSGSLEYV 130
Query: 83 FYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
E A + +G+ G + E
Sbjct: 131 LQMPSEEATELSSFAREEGMACLGTWPREKC 161
>gi|302037181|ref|YP_003797503.1| ATP-dependent Clp protease adapter protein ClpS [Candidatus
Nitrospira defluvii]
gi|300605245|emb|CBK41578.1| ATP-dependent Clp protease adapter protein ClpS [Candidatus
Nitrospira defluvii]
Length = 97
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 61 RVLLVNDNYTPMEFVIHVLQN-FFYKDHETAKCIMLKVHHQGIGECGVYAYEIAE 114
RV++ N + + VI + + A + ++ H+G + AE
Sbjct: 27 RVIVFNCDCHTYQQVIALFCKCIPGMNSSRAFELAWRIDHEGQATVYSGERKAAE 81
>gi|321474544|gb|EFX85509.1| hypothetical protein DAPPUDRAFT_314139 [Daphnia pulex]
Length = 1956
Score = 44.8 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
Y + ND E VI LQ A + + +G ++ NQ
Sbjct: 365 YATAVYNDESHTFEQVIQALQRSLDVSSREAVDLATCIDREGRSIVRCSSF----QACNQ 420
Query: 120 VMNYSRQH 127
+ +H
Sbjct: 421 ARSAIERH 428
>gi|310793818|gb|EFQ29279.1| hypothetical protein GLRG_04423 [Glomerella graminicola M1.001]
Length = 2138
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
Y ++L ND ME V + + A + G
Sbjct: 233 PEYALVLWNDEKHTMEDVQNQIARACRTTEAQALQRATETDLIGRSI 279
>gi|71003067|ref|XP_756214.1| hypothetical protein UM00067.1 [Ustilago maydis 521]
gi|46096219|gb|EAK81452.1| hypothetical protein UM00067.1 [Ustilago maydis 521]
Length = 2223
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 58 KLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
+ Y VLL ND VI ++ + + AK + +V G V + +
Sbjct: 449 RQYAVLLWNDEKHSFSQVIDIVTDATGRSEHDAKGVAERVDKHGREIIEVGS------DL 502
Query: 118 NQVMNYSR-QHQYPLQCIMEQ 137
++ +R H L +
Sbjct: 503 RRLHQIARVLHSIDLAVTIRP 523
>gi|294877966|ref|XP_002768216.1| hypothetical protein Pmar_PMAR003006 [Perkinsus marinus ATCC 50983]
gi|239870413|gb|EER00934.1| hypothetical protein Pmar_PMAR003006 [Perkinsus marinus ATCC 50983]
Length = 1101
Score = 44.4 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYK-DHETAKCIMLKVHHQGIGECGVYA-YEIAEMKV 117
++VLL ND + + V ++ + + + A LK H G +AE V
Sbjct: 70 WQVLLHNDQFHTFDQVADIVHDMLGQVSRQDAFSAALKAHRYGESSLTTAPQRSVAERWV 129
Query: 118 NQVMN 122
+ +
Sbjct: 130 KMLTD 134
>gi|224013842|ref|XP_002296585.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968937|gb|EED87281.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 168
Score = 44.0 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 31 RMNKKGIAEFDNCLDSEVRFSSKVRVPK----LYRV--LLVNDNYTPMEFVIHVLQNFFY 84
M+ + + + E + + R P + + + +D E++ L
Sbjct: 54 DMSYELMEVTTTTMSGEHQMYQQTREPPVGPLKWELGLIHYDDCEHNDEYISECLSQVVG 113
Query: 85 KDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
E A + G+ + + AEM ++
Sbjct: 114 ISEEDANLVSTLARQHGVALIEEFPRKYAEMYQQEL 149
>gi|256053250|ref|XP_002570112.1| ubiquitin ligase E3 alpha-related [Schistosoma mansoni]
gi|227287487|emb|CAY17805.1| ubiquitin ligase E3 alpha-related [Schistosoma mansoni]
Length = 2627
Score = 44.0 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
S + + + VLL N+ Y E VI L+ + + V+ G
Sbjct: 419 SERTAASRSFLVLLYNNEYHNYEQVIKTLRRVLDCTTQQGTHYAVLVNCDGRAV 472
>gi|284123345|ref|ZP_06386927.1| Adaptor protein ClpS, core [Candidatus Poribacteria sp. WGA-A3]
gi|283829267|gb|EFC33674.1| Adaptor protein ClpS, core [Candidatus Poribacteria sp. WGA-A3]
Length = 98
Score = 44.0 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 61 RVLLVNDNYTPMEFVIHVLQ-NFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
V++ N + + VI + + A + ++ H G ++ AE +
Sbjct: 28 EVIVYNCDCHTYQQVIDLFCRHIPGMTSSKAFELAWRIDHHGNARVYEGTHKSAETIATK 87
Query: 120 V 120
+
Sbjct: 88 L 88
>gi|326433055|gb|EGD78625.1| hypothetical protein PTSG_01603 [Salpingoeca sp. ATCC 50818]
Length = 2743
Score = 44.0 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 56 VPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE---I 112
L+ L ND + VI LQ + + V +G +
Sbjct: 207 EEDLHCTTLYNDEVHTFDQVIRQLQAAVGSTPDLGRTWANYVDVEGRAVVRIGRPRPCID 266
Query: 113 AEMKVNQVMNYSRQH 127
A + Q+ +R+
Sbjct: 267 AATTLVQIRLDAREQ 281
>gi|149236752|ref|XP_001524253.1| hypothetical protein LELG_04224 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451788|gb|EDK46044.1| hypothetical protein LELG_04224 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1281
Score = 44.0 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
V + ++L ND + + + +++ + + A + K+ +G
Sbjct: 244 EIDVNSQDKWYLILWNDEFHDVNQAVESIKSCKRCNDDQAIKLATKIDKEGYAILL---- 299
Query: 111 EIAEMKVNQVMNYSRQHQYPLQCIM 135
AE + L +
Sbjct: 300 -KAENYRELTTPKFKVEAGGLVSTI 323
>gi|119624502|gb|EAX04097.1| ubiquitin protein ligase E3 component n-recognin 2, isoform CRA_d
[Homo sapiens]
Length = 277
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 15/47 (31%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQ 100
V Y +L ND E VI+ LQ + A V
Sbjct: 221 VEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRD 267
>gi|224013562|ref|XP_002296445.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968797|gb|EED87141.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 163
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 49 RFSSKVRVPKLYRV--LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
+ P + + + +D E++ L E A + G+
Sbjct: 76 QTRESPAGPLKWELGLIHYDDCEHSNEYISECLSQVVGISEEDANLVSTLARQHGVALIE 135
Query: 107 VYAYEIAEMKVNQV 120
+ + AEM ++
Sbjct: 136 EFPRKYAEMYQQEL 149
>gi|159489657|ref|XP_001702813.1| clp protease adaptor protein [Chlamydomonas reinhardtii]
gi|158271030|gb|EDO96858.1| clp protease adaptor protein [Chlamydomonas reinhardtii]
Length = 169
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Query: 35 KGIAEFDNCLDSEVRFSSKVRVPKL---YRVLLVNDNYTPMEFVIHVL-QNFFYKDHETA 90
+ ++ + P YRVLL++ + V+ + + + + A
Sbjct: 64 PSWDAKTDNGNNGSNTDKDKKSPPGGGNYRVLLLDSPQHTEKGVVAAITRVVPGTNPDHA 123
Query: 91 KCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNY 123
+ G+ E AE+ Q+ Y
Sbjct: 124 RNCFATSKQLGMAIITTALKEHAELYREQLFTY 156
>gi|256376714|ref|YP_003100374.1| ATP-dependent Clp protease adaptor protein ClpS [Actinosynnema
mirum DSM 43827]
gi|255921017|gb|ACU36528.1| ATP-dependent Clp protease adaptor protein ClpS [Actinosynnema
mirum DSM 43827]
Length = 80
Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYA-YEIAEMKVN 118
+RV++++D+ + + L D E A ++H +G +A + AE V
Sbjct: 9 WRVVVLDDDVNTLTTAGYALAAHCGLDAEGA---AWRLHTEGSVPVAEFADRDPAEELVV 65
Query: 119 QVMNYSRQHQYPLQCIMEQ 137
R ++ L +
Sbjct: 66 ------RLQRHGLHAALRP 78
>gi|167524579|ref|XP_001746625.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774895|gb|EDQ88521.1| predicted protein [Monosiga brevicollis MX1]
Length = 1898
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 18/60 (30%)
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
+++ ND VI +L + A+ L + G + E +
Sbjct: 456 LVVYNDELHDFVQVIEILSLATHCTEARARSWALLIDEIGRAVILLGTPGQCEQGSEIIT 515
>gi|298713231|emb|CBJ33527.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 998
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
V + ND+ E+VI + + A + +V G+ + + + +
Sbjct: 288 VRVHNDDVHTFEYVIGTFTDL-GISYHNAAALTQEVDDNGMANVLRASR----PRALRTL 342
Query: 122 NYSRQHQ 128
+ R+ Q
Sbjct: 343 RFLRERQ 349
>gi|224004900|ref|XP_002296101.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209586133|gb|ACI64818.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 176
Score = 41.7 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 45 DSEVRFSSKVRV-----------PKLYRVLLVNDNYTPMEFVIHVLQNFF-YKDHETAKC 92
+ + K + L+ ++L+ D VI L + + A
Sbjct: 71 EEVTKQKKKFKPSEPEEEYEFKEAPLWLLMLIADEADEQMHVITRLTEIVEDVNDDMAAE 130
Query: 93 IMLKVHHQGIGECGVYAYEIAEMKVNQVMN 122
+ + G G Y EI EM Q+
Sbjct: 131 LFKAANMVGEALVGKYPKEIGEMYAEQLTR 160
>gi|294659911|ref|XP_462347.2| DEHA2G18568p [Debaryomyces hansenii CBS767]
gi|199434328|emb|CAG90854.2| DEHA2G18568p [Debaryomyces hansenii]
Length = 1814
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 57 PKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
L+ ++L ND + ++ ++ A I ++ G
Sbjct: 242 DSLWYLILWNDEHHDFPSATKAIKAAVGVNYSRAHEIASDINASGRCV 289
>gi|325181571|emb|CCA16021.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 2407
Score = 41.0 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 7/86 (8%), Positives = 25/86 (29%)
Query: 20 ALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVL 79
++ ++ + + + + + K + + + ND+ V + L
Sbjct: 369 SVSPTGSNDHTQEREDYQVKPTLHRSGQGKKALKNTDGGQFYIRIHNDDVHTYHKVANTL 428
Query: 80 QNFFYKDHETAKCIMLKVHHQGIGEC 105
F + ++ + G
Sbjct: 429 STTFQLSESVSTRVVDAIDRHGDAII 454
>gi|322697974|gb|EFY89748.1| E3 ubiquitin-protein ligase ubr11 [Metarhizium acridum CQMa 102]
Length = 2252
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++L ND ++ V + K A + G Y +I ++
Sbjct: 420 FALILWNDEKHTVQEVQDQIARACRKTRREAAQNAWETDAVGRSIL-TYLSDI-----DR 473
Query: 120 VMNYSRQHQ 128
++ ++ +
Sbjct: 474 LLQMAKIME 482
>gi|255721247|ref|XP_002545558.1| hypothetical protein CTRG_00339 [Candida tropicalis MYA-3404]
gi|240136047|gb|EER35600.1| hypothetical protein CTRG_00339 [Candida tropicalis MYA-3404]
Length = 1807
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC--GVY 108
+ + + ++L ND + + + ++ + A I K+ +G GV
Sbjct: 235 AEDINSTDKWYLVLWNDEFHNVTEAVDAIKAGTGVNDFRAHQIANKIDREGFCLLKEGVT 294
Query: 109 AYEIAEMK 116
+A K
Sbjct: 295 PRVLARSK 302
>gi|224013582|ref|XP_002296455.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968807|gb|EED87151.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 205
Score = 39.4 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 56 VPKLYRV--LLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIA 113
P + + + +D EF+ L E A + G+ + + A
Sbjct: 125 EPLKWELGLIRHDDCKHSNEFISECLSQVVGISEEDANLVSSLARQHGVALIEEFPRKYA 184
Query: 114 EMKVNQV 120
M ++
Sbjct: 185 VMYQQEL 191
>gi|330431512|gb|AEC16571.1| putative oxidoreductase [Gallibacterium anatis UMN179]
Length = 355
Score = 39.0 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 71 PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYP 130
+ V VL + H I + +G + I E +Q++ ++++ P
Sbjct: 60 TQQKVNLVLIATYNYSHRQLAEIAI---QKGCAVFIETPFTINEQDAHQLIQMAKENNVP 116
Query: 131 L 131
L
Sbjct: 117 L 117
>gi|296418782|ref|XP_002839004.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634998|emb|CAZ83195.1| unnamed protein product [Tuber melanosporum]
Length = 2122
Score = 38.7 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
Y +++ ND ++ V + K K + H G
Sbjct: 250 YALIVWNDEKHTIDEVEDQVARACKKTKGFGKEKAQETHFVGRSIVA 296
>gi|239615546|gb|EEQ92533.1| ubiquitin-protein ligase E3 component [Ajellomyces dermatitidis
ER-3]
gi|327354695|gb|EGE83552.1| ubiquitin-protein ligase E3 component [Ajellomyces dermatitidis
ATCC 18188]
Length = 2176
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
V + ++L ND + V + L + + + H G Y+ +
Sbjct: 233 VEEEPEFALVLWNDEKHTVTEVANQLSRACREGSKFGIEKANETHEIGRSVVR-YSKD 289
>gi|261199544|ref|XP_002626173.1| ubiquitin-protein ligase E3 component [Ajellomyces dermatitidis
SLH14081]
gi|239594381|gb|EEQ76962.1| ubiquitin-protein ligase E3 component [Ajellomyces dermatitidis
SLH14081]
Length = 2148
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
V + ++L ND + V + L + + + H G Y+ +
Sbjct: 233 VEEEPEFALVLWNDEKHTVTEVANQLSRACREGSKFGIEKANETHEIGRSVVR-YSKD 289
>gi|219122605|ref|XP_002181632.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406908|gb|EEC46846.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1373
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 12/61 (19%)
Query: 61 RVLLVNDNYTPMEFVIHVLQN---FFYKDHET---------AKCIMLKVHHQGIGECGVY 108
++ L ND+ + VI L + A + V G +
Sbjct: 541 QLRLHNDDVHTFDEVIEALHKPRSLRRHSEDRQSLVALRDHATEMTHHVDADGQVTVKTF 600
Query: 109 A 109
Sbjct: 601 T 601
>gi|260825207|ref|XP_002607558.1| hypothetical protein BRAFLDRAFT_119718 [Branchiostoma floridae]
gi|229292906|gb|EEN63568.1| hypothetical protein BRAFLDRAFT_119718 [Branchiostoma floridae]
Length = 1216
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 11 HRVKRDGILALMS-----FIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLV 65
H V D + + ++ D + G + DN + K +Y
Sbjct: 762 HEVYSDEAIRVTPPPTSSYLNGDDDPESPNGDLDMDNVTRVRLVQFQKNTEEPMY----- 816
Query: 66 NDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECG 106
ME V V F K+ + I LK++ +G
Sbjct: 817 -----DMENVTRVRLIQFQKNTDEPMGITLKMNEEGRCVVA 852
>gi|301117228|ref|XP_002906342.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262107691|gb|EEY65743.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 2268
Score = 37.9 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 22/71 (30%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLK 96
A+ + + L+ + L ND+ + V++ L A+ + +
Sbjct: 297 EAQTNEADHKTTSSEDDSKAGVLFGIGLHNDDVHSVNEVVNHLYVELGMSKPQARSAVSQ 356
Query: 97 VHHQGIGECGV 107
V G
Sbjct: 357 VDDLGDATVAT 367
>gi|322708526|gb|EFZ00103.1| E3 ubiquitin-protein ligase ubr11 [Metarhizium anisopliae ARSEF 23]
Length = 2263
Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
+ ++L ND ++ V + K A + G +Y +I +
Sbjct: 433 FALILWNDEKHTVQEVQDQIARACRKTRREAAKDAWETDAVGRSIL-IYLNDI-----DM 486
Query: 120 VMNYSRQHQ 128
++ ++ +
Sbjct: 487 LLQMAKIME 495
>gi|33861243|ref|NP_892804.1| hypothetical protein PMM0686 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639975|emb|CAE19145.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 60
Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 37 IAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQN 81
+ DN S V + R R+++++DN+ E V + L
Sbjct: 1 MKISDNLTTSVVDPKTTKRKYPKARIIVLDDNFNTFEHVANCLVR 45
>gi|320591337|gb|EFX03776.1| ubiquitin-protein ligase e3 component [Grosmannia clavigera kw1407]
Length = 2108
Score = 37.5 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 14/52 (26%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
P Y VLL ND + V H + + + G
Sbjct: 233 DTGPPDEYAVLLWNDEKHTVTDVAHQVARACQTTAADGQKRAHETDEIGRSL 284
>gi|225557538|gb|EEH05824.1| E3 ubiquitin-protein ligase ubr11 [Ajellomyces capsulatus G186AR]
Length = 2174
Score = 37.5 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
V+ + ++L ND + V + + + + H G Y+ +
Sbjct: 233 VQEEPEFALVLWNDEKHTVTEVANQVVRACREASRFGVEKANETHEIGRSVVK-YSKD 289
>gi|302922273|ref|XP_003053431.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734372|gb|EEU47718.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 2159
Score = 37.1 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
+ ++L ND ++ V + K A + G Y+ EI
Sbjct: 236 FALILWNDEKHTVQEVQDQVARACRKSRRAAAENAWETDAIGRSIL-TYSSEI 287
>gi|299754936|ref|XP_001828298.2| hypothetical protein CC1G_02879 [Coprinopsis cinerea okayama7#130]
gi|298410993|gb|EAU93649.2| hypothetical protein CC1G_02879 [Coprinopsis cinerea okayama7#130]
Length = 2081
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 33 NKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDH 87
+ I N D ++ S+ + +Y V+L N + + V V+ + K H
Sbjct: 221 SPDEITVPLNEADLRLQPSADPMMKDVYCVVLWNGDKHTFDEVKTVILDLTGKGH 275
>gi|302829927|ref|XP_002946530.1| hypothetical protein VOLCADRAFT_115933 [Volvox carteri f.
nagariensis]
gi|300268276|gb|EFJ52457.1| hypothetical protein VOLCADRAFT_115933 [Volvox carteri f.
nagariensis]
Length = 170
Score = 37.1 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 60 YRVLLVNDNYTPMEFVIH-VLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVN 118
YRVLL++ + V+ + D A+ G+ E AE
Sbjct: 93 YRVLLMDSPQHSEKVVVRGICTVVPNADEAHARNCYHTSKQLGMAIITTALKEHAEFYRQ 152
Query: 119 QVMNYS 124
Q+ Y
Sbjct: 153 QLYTYG 158
>gi|226330748|ref|ZP_03806266.1| hypothetical protein PROPEN_04668 [Proteus penneri ATCC 35198]
gi|225201543|gb|EEG83897.1| hypothetical protein PROPEN_04668 [Proteus penneri ATCC 35198]
Length = 42
Score = 37.1 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 42 NCLDSEVRFSSKVRVPKLYRVLLVNDNYTP 71
K P +Y+V+L ND+YTP
Sbjct: 8 TETTLGEDVHQKNEPPSMYKVILNNDDYTP 37
>gi|317146484|ref|XP_001820808.2| hypothetical protein AOR_1_1896144 [Aspergillus oryzae RIB40]
Length = 1809
Score = 37.1 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 17/123 (13%)
Query: 5 DDGSMYHRVKRDGILALMSF-IFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVL 63
D+ S+ R L S + S + R S P +
Sbjct: 696 DNLSLLQRSLMQHGLRYDSDSLLRPQSSDRPRTPTPSQTRRSIRKRSSPSKNEPD----V 751
Query: 64 LVNDNYTP------MEFVIHVLQNFFYKD------HETAKCIMLKVHHQGIGECGVYAYE 111
+ ND +P M V VL+ A IM + +G G+ + E
Sbjct: 752 VYNDENSPPETNVPMVKVTGVLEETRKGSITTQDFLNEATKIMDIIRSKGRNVGGLSSVE 811
Query: 112 IAE 114
+E
Sbjct: 812 ESE 814
>gi|154274928|ref|XP_001538315.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414755|gb|EDN10117.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 2174
Score = 36.7 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
V+ + ++L ND + V + + + + H G Y+ +
Sbjct: 233 VQEEPEFALVLWNDEKHTVTEVANQVVRACREASRFGIEKANETHEIGRSVVK-YSKD 289
>gi|190346256|gb|EDK38296.2| hypothetical protein PGUG_02394 [Meyerozyma guilliermondii ATCC
6260]
Length = 674
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 7/53 (13%), Positives = 17/53 (32%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
L+ ++L ND ++ + + A+ + + QG
Sbjct: 234 DTNSSNLWYLVLWNDENHTVDQALQAILAASKLAKPRAQALTQVISEQGKAVI 286
>gi|146417392|ref|XP_001484665.1| hypothetical protein PGUG_02394 [Meyerozyma guilliermondii ATCC
6260]
Length = 674
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 7/53 (13%), Positives = 17/53 (32%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
L+ ++L ND ++ + + A+ + + QG
Sbjct: 234 DTNSSNLWYLVLWNDENHTVDQALQAILAASKLAKPRAQALTQVISEQGKAVI 286
>gi|116182518|ref|XP_001221108.1| hypothetical protein CHGG_01887 [Chaetomium globosum CBS 148.51]
gi|88186184|gb|EAQ93652.1| hypothetical protein CHGG_01887 [Chaetomium globosum CBS 148.51]
Length = 2143
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 13/52 (25%)
Query: 53 KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
P Y VLL ND + V + A + G
Sbjct: 230 DTESPGEYAVLLWNDEKHTVIDVRDQVARACSTTMANAMSKAYETDGIGRSI 281
>gi|154311182|ref|XP_001554921.1| hypothetical protein BC1G_06709 [Botryotinia fuckeliana B05.10]
gi|150851113|gb|EDN26306.1| hypothetical protein BC1G_06709 [Botryotinia fuckeliana B05.10]
Length = 2239
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
V P + +LL ND + V + + + G Y ++I
Sbjct: 233 VEDPCEFALLLWNDEKHTVNEVRDQVARACKVTNAEGMQRAHETDDIGRSVIK-YDHDI 290
>gi|238881549|gb|EEQ45187.1| hypothetical protein CAWG_03501 [Candida albicans WO-1]
Length = 1787
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+S V + ++L ND + + + ++ D A I K+ +G
Sbjct: 231 ASDVNSTNRWALILWNDEFHNLTEAVTAIKAGTGVDDRNAYKIAEKIDIKGFCV 284
>gi|68470882|ref|XP_720448.1| hypothetical protein CaO19.2695 [Candida albicans SC5314]
gi|68471340|ref|XP_720218.1| hypothetical protein CaO19.10210 [Candida albicans SC5314]
gi|46442074|gb|EAL01366.1| hypothetical protein CaO19.10210 [Candida albicans SC5314]
gi|46442315|gb|EAL01605.1| hypothetical protein CaO19.2695 [Candida albicans SC5314]
Length = 1787
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 51 SSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGE 104
+S V + ++L ND + + + ++ D A I K+ +G
Sbjct: 231 ASDVNSTNRWALILWNDEFHNLTEAVTAIKAGTGVDDRNAYKIAEKIDIKGFCV 284
>gi|226292196|gb|EEH47616.1| E3 ubiquitin-protein ligase ubr11 [Paracoccidioides brasiliensis
Pb18]
Length = 2161
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 55 RVPKLYRVLLVNDNYTP----MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+ ++L ND V+ + E A + H G Y+
Sbjct: 228 EEEPEFALVLWNDEKHTVTEVANQVVRACREVSRFGKEKA----NETHEIGRSVVK-YSR 282
Query: 111 E 111
+
Sbjct: 283 D 283
>gi|225681103|gb|EEH19387.1| ring finger protein [Paracoccidioides brasiliensis Pb03]
Length = 2161
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 55 RVPKLYRVLLVNDNYTP----MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+ ++L ND V+ + E A + H G Y+
Sbjct: 228 EEEPEFALVLWNDEKHTVTEVANQVVRACREVSRFGKEKA----NETHEIGRSVVK-YSR 282
Query: 111 E 111
+
Sbjct: 283 D 283
>gi|325096245|gb|EGC49555.1| ubiquitin ligase [Ajellomyces capsulatus H88]
Length = 2174
Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 54 VRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
V+ + ++L ND + V + + + + H G Y+ +
Sbjct: 233 VQEEPEFALVLWNDEKHTVTEVANQVVRACREASRFGVEKANETHDIGRSVVK-YSKD 289
>gi|328773767|gb|EGF83804.1| hypothetical protein BATDEDRAFT_21290 [Batrachochytrium
dendrobatidis JAM81]
Length = 2278
Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGI 102
+ +L ND + VI + A+ + + V +G
Sbjct: 285 FSCVLWNDESHSFQEVIDQVAEATNCTEAYARSVAVAVDKRGR 327
>gi|295673454|ref|XP_002797273.1| E3 ubiquitin-protein ligase ubr11 [Paracoccidioides brasiliensis
Pb01]
gi|226282645|gb|EEH38211.1| E3 ubiquitin-protein ligase ubr11 [Paracoccidioides brasiliensis
Pb01]
Length = 2162
Score = 36.3 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 55 RVPKLYRVLLVNDNYTP----MEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAY 110
+ ++L ND V+ + E A + H G Y+
Sbjct: 228 EEEPEFALVLWNDEKHTVTEVANQVVRACREVSRFGKEKA----NETHEIGRSVVK-YSR 282
Query: 111 E 111
+
Sbjct: 283 D 283
>gi|224006984|ref|XP_002292452.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972094|gb|EED90427.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 3493
Score = 36.3 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 14 KRDGILALMSFIFMA-DSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRV--LLVNDNYT 70
+R +L ++ + + ++ LD+ + +PK Y + L ND+
Sbjct: 552 RRGAVLHEVANLSSPCVGNVTPPVWTVPEHVLDAANEHYT-TELPKKYNLYLRLHNDDVH 610
Query: 71 PMEFVIHVLQNFFYK 85
+ VI L + +K
Sbjct: 611 TFDEVIRALNHKSHK 625
>gi|170078559|ref|YP_001735197.1| putative two-component sensor histidine kinase [Synechococcus sp.
PCC 7002]
gi|169886228|gb|ACA99941.1| putative two-component sensor histidine kinase [Synechococcus sp.
PCC 7002]
Length = 438
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 19/115 (16%)
Query: 6 DGSMYHRVKRDGILALMSFIFMADSRM--NKKGIAEFDNCLDSEVRFSS----KVRVPKL 59
+G + +G L+ ++ + + + + ++ P
Sbjct: 242 EGGPSLALPPNGELSFAPDRSLSVEPLPVAEVVLPLVASLGAIATERGITLNYRLPEPSP 301
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKD----------HETAKCIMLKVHHQGIGE 104
+ ++ ++ ME + ++L+N A + + VH G G
Sbjct: 302 W---VLGNHTALMEVLNNLLENALKYTPSGGQVFLQVEAQAHELTIAVHDTGYGI 353
>gi|223997410|ref|XP_002288378.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975486|gb|EED93814.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 200
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 49 RFSSKVRVPKLYRVLLVNDNYT-----PMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIG 103
+ +LL++D + +E+ + A + + ++G
Sbjct: 82 DREVSRETDDPFHILLLDDTFAKNSRITIEYCASSCSYVLGMPFDDAAELAMHAKNEGFS 141
Query: 104 ECGVYAYEIA 113
G + + A
Sbjct: 142 CLGTWTHAEA 151
>gi|316972224|gb|EFV55911.1| putative ATP-dependent Clp protease adaptor protein ClpS
[Trichinella spiralis]
Length = 1267
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 59 LYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+ +++ ND E VI L + D A+ + ++ G E
Sbjct: 125 PHAIVMFNDEVHSYEDVISTLSSALDIDTTCARLLSARIDRDGCSVVFCAILE 177
>gi|303312051|ref|XP_003066037.1| Putative zinc finger in N-recognin family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240105699|gb|EER23892.1| Putative zinc finger in N-recognin family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 2180
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+ V+L ND + V + + + + + G Y+ +
Sbjct: 229 EESPEFAVVLWNDEKHTIREVTQQVARACRESSQFGLDRANETNDYGRSVVK-YSKD 284
>gi|119193464|ref|XP_001247338.1| hypothetical protein CIMG_01109 [Coccidioides immitis RS]
Length = 2182
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+ V+L ND + V + + + + + G Y+ +
Sbjct: 229 EESPEFAVVLWNDEKHTIREVTQQVARACRESSQFGLDRANETNDYGRSVVK-YSKD 284
>gi|168698907|ref|ZP_02731184.1| hypothetical protein GobsU_05271 [Gemmata obscuriglobus UQM 2246]
Length = 60
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 75 VIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQ 119
V + + A+ M + HH G V E AE+ V Q
Sbjct: 3 VTRAVMDITRFGSAEAEYRMWEAHHCGRSLVVVTHLERAELFVEQ 47
>gi|328349919|emb|CCA36319.1| E3 ubiquitin-protein ligase UBR1 [Pichia pastoris CBS 7435]
Length = 1842
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
+ V+L ND + + I +Q + K++ G
Sbjct: 247 WNVVLWNDEFHNYDEAIDCIQQVSRCSLSKGQADAQKINDFGFSII 292
>gi|254564761|ref|XP_002489491.1| Ubiquitin-protein ligase (E3) [Pichia pastoris GS115]
gi|238029287|emb|CAY67210.1| Ubiquitin-protein ligase (E3) [Pichia pastoris GS115]
Length = 1811
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 60 YRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGEC 105
+ V+L ND + + I +Q + K++ G
Sbjct: 247 WNVVLWNDEFHNYDEAIDCIQQVSRCSLSKGQADAQKINDFGFSII 292
>gi|320040013|gb|EFW21947.1| ubiquitin-protein ligase E3 component [Coccidioides posadasii str.
Silveira]
Length = 1530
Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 55 RVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYE 111
+ V+L ND + V + + + + + G Y+ +
Sbjct: 229 EESPEFAVVLWNDEKHTIREVTQQVARACRESSQFGLDRANETNDYGRSVVK-YSKD 284
>gi|157165676|ref|YP_001466294.1| N-(5'phosphoribosyl)anthranilate isomerase [Campylobacter concisus
13826]
gi|112800837|gb|EAT98181.1| N-(5'phosphoribosyl)anthranilate isomerase [Campylobacter concisus
13826]
Length = 204
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 82 FFYKDHET-----AKCIMLKVHHQGIGECGVYAY----EI------AEMKVNQVMNYSRQ 126
F K A+ I H +G GV+A EI AE+ V QV +
Sbjct: 29 IFAKSKRRVELNLARQIAKFAHSKGKKVVGVFALQSDCEIMEICQFAELDVAQVHGAISE 88
Query: 127 HQY 129
+ +
Sbjct: 89 NLH 91
>gi|308453620|ref|XP_003089512.1| hypothetical protein CRE_02726 [Caenorhabditis remanei]
gi|308239989|gb|EFO83941.1| hypothetical protein CRE_02726 [Caenorhabditis remanei]
Length = 786
Score = 34.4 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 12/102 (11%)
Query: 34 KKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCI 93
+ D E+ S+ + +L + E V+ VL+ + + A +
Sbjct: 199 NDDLKLPDFFEKLEIESSTDNQQC---LTVLYKNETHSYESVLKVLELY--CTKDQAMFV 253
Query: 94 MLKVHHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQCIM 135
V +G + + + H PL +
Sbjct: 254 ETIVDREGRSAVKLGNK----TDCIRAKD---DHHLPLSFKV 288
>gi|154305384|ref|XP_001553094.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|150853248|gb|EDN28440.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 1107
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 6 DGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLV 65
+G + + L + F S L + R + + K RVL+
Sbjct: 945 NGGAGYSIDTQPRLVGLRQPFFTSSPTPPPNDDNAKTQLAAIDRAAKEKVGDKKIRVLVA 1004
Query: 66 NDNYTPMEFVIHVLQ------NFFYKDHETAKCIMLKVHHQGI 102
DN E V+ +L+ KD + A I+ + +G
Sbjct: 1005 EDNLVNQEVVLRMLKLEDVYDVVVAKDGQEAYDIVKQSMEEGK 1047
>gi|39726319|gb|AAR30105.1| putative histidine kinase HHK5p [Botryotinia fuckeliana]
Length = 1075
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 6 DGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRVLLV 65
+G + + L + F S L + R + + K RVL+
Sbjct: 945 NGGAGYSIDTQPRLVGLRQPFFTSSPTPPPNDDNAKTQLAAIDRAAKEKVGDKKIRVLVA 1004
Query: 66 NDNYTPMEFVIHVLQ------NFFYKDHETAKCIMLKVHHQGI 102
DN E V+ +L+ KD + A I+ + +G
Sbjct: 1005 EDNLVNQEVVLRMLKLEDVYDVVVAKDGQEAYDIVKQSMEEGK 1047
>gi|27462479|gb|AAO15451.1|AF436129_4 putative regulatory protein E2 [Human papillomavirus 54]
Length = 366
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 62 VLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVM 121
V+ M++V+ F D E + + G +Y + AE KV V
Sbjct: 119 VIFDGHKENTMQYVMWACIYFPNCDGEGWTKVCSNIDAMG-----IYYMD-AEYKVYYV- 171
Query: 122 NYSRQH 127
+++++
Sbjct: 172 DFAKEA 177
>gi|154422105|ref|XP_001584065.1| TB2/DP1, HVA22 family protein [Trichomonas vaginalis G3]
gi|121918310|gb|EAY23079.1| TB2/DP1, HVA22 family protein [Trichomonas vaginalis G3]
Length = 151
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 74 FVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQVMNYS 124
++ + F + +TA I +K H++G E+A+ KV + ++ +
Sbjct: 98 YIEPTVDAFVDRYSQTALQIAIKAHNEGKALMQKAGEEMAKQKVQEAIDDA 148
>gi|190364913|gb|ACE77085.1| oligosaccharide-producing multifunctional G-amylase [Bacillus sp.
ZW2531-1]
Length = 561
Score = 34.0 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 46 SEVRFSSKVRVPKLYRVLLVNDNY---TPMEFVIHVLQNFFYKDHETAKCIM--LKVHHQ 100
++R K+ + Y++L ND E+ L E A + +H +
Sbjct: 471 IQLRKQYKIMIYGDYQLLQENDPQVFSYLREYQGEKLLVVVNLSEEKALFVAPPELIHER 530
Query: 101 GIGECGVYAYEIAEMKVNQVMNY 123
Y E A++K + Y
Sbjct: 531 WKVLISNYPQERADLKSISLKPY 553
>gi|123474958|ref|XP_001320659.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121903469|gb|EAY08436.1| hypothetical protein TVAG_354950 [Trichomonas vaginalis G3]
Length = 343
Score = 33.6 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 47 EVRFSSKVR-VPKLYRVLLVNDNYTP-----MEFVI---HVLQNFFYKDHETAKCIMLKV 97
EVR K + P L+ V N + EFV ++ + + A +
Sbjct: 54 EVRPRQKTQINPPLHTVFFYNMPFNTPKEKINEFVSQFGEIVNLYPRSEKGQAFATYYDI 113
Query: 98 HHQGIGECGVYAYEIAEMKVN 118
V E E KV+
Sbjct: 114 RDAEKAVEAVQDREFMERKVS 134
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.313 0.158 0.451
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,441,432,606
Number of Sequences: 13984884
Number of extensions: 69746338
Number of successful extensions: 208372
Number of sequences better than 10.0: 1410
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 206626
Number of HSP's gapped (non-prelim): 1431
length of query: 138
length of database: 4,792,584,752
effective HSP length: 103
effective length of query: 35
effective length of database: 3,352,141,700
effective search space: 117324959500
effective search space used: 117324959500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 76 (33.6 bits)