Query gi|254780165|ref|YP_003064578.1| hypothetical protein CLIBASIA_00240 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 71
No_of_seqs 97 out of 99
Neff 3.8
Searched_HMMs 33803
Date Sun May 22 22:10:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780165.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1h2i_A RAD52, DNA repair prot 70.7 4.4 0.00013 22.0 3.3 31 3-33 29-60 (67)
2 >2npb_A Selenoprotein W; struc 64.5 13 0.00039 19.3 4.9 37 10-46 19-57 (96)
3 >2p0g_A Selenoprotein W-relate 50.3 23 0.00068 17.9 4.6 37 10-46 20-57 (105)
4 >3d3a_A Beta-galactosidase; pr 49.5 17 0.0005 18.7 3.2 45 18-66 25-71 (134)
5 >3dex_A SAV_2001; alpha-beta p 47.7 25 0.00075 17.7 4.7 37 10-46 29-66 (107)
6 >2fa8_A Hypothetical protein A 46.6 23 0.00068 17.9 3.5 37 10-46 24-61 (105)
7 >3cmg_A Putative beta-galactos 43.6 29 0.00087 17.3 4.3 30 33-62 44-73 (112)
8 >3dou_A Ribosomal RNA large su 42.1 16 0.00047 18.9 2.1 37 5-41 140-176 (191)
9 >2as0_A Hypothetical protein P 34.0 27 0.00079 17.5 2.2 54 3-56 4-59 (70)
10 >2zoo_A Probable nitrite reduc 34.0 23 0.00068 17.9 1.9 21 4-24 37-57 (71)
11 >2g7h_A Methylated-DNA--protei 32.3 34 0.001 16.9 2.5 15 39-53 3-17 (34)
12 >3gm8_A Glycoside hydrolase fa 30.4 48 0.0014 16.0 3.1 50 5-54 11-78 (111)
13 >3gm8_A Glycoside hydrolase fa 29.8 48 0.0014 16.0 2.9 35 27-65 86-120 (164)
14 >3c0w_A Intron-encoded endonuc 28.7 52 0.0015 15.9 3.2 29 4-32 22-50 (59)
15 >3fn9_A Putative beta-galactos 26.2 57 0.0017 15.6 3.6 35 27-65 80-114 (161)
16 >2ojl_A Hypothetical protein; 26.1 57 0.0017 15.6 3.5 37 10-46 25-62 (108)
17 >1y7r_A Hypothetical protein S 22.7 67 0.002 15.2 4.3 68 1-68 2-73 (133)
18 >2oka_A Hypothetical protein; 22.6 67 0.002 15.2 4.3 37 10-46 22-59 (104)
19 >3c0k_A UPF0064 protein YCCW; 22.5 26 0.00078 17.6 0.5 55 1-55 3-59 (71)
20 >1yq2_A Beta-galactosidase; gl 22.0 68 0.002 15.2 2.5 36 26-65 140-175 (221)
No 1
>>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} (A:1-67)
Probab=70.68 E-value=4.4 Score=22.05 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=24.9
Q ss_pred EEECHHHHHHHHHHHHHHCCCC-EEEEECCCC
Q ss_conf 0458999999999999861996-399507998
Q gi|254780165|r 3 VRMRADEIKKLERYLKRVFGSG-IAVQSRENQ 33 (71)
Q Consensus 3 i~M~~~Ei~klq~yLr~~F~~~-i~v~~r~~~ 33 (71)
..-++.|++.||+-|++++|++ |+-++-+..
T Consensus 29 ~~yT~~E~~~iq~~L~k~LGPEyIS~R~G~GG 60 (67)
T 1h2i_A 29 CQYTAEEYQAIQKALRQRLGPEYISSRMAGGG 60 (67)
T ss_dssp CCCCHHHHHHHHHHHHCCBCTTTEEEEECTTS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHEEECCCCC
T ss_conf 22208888999999964247113202126896
No 2
>>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus} (A:)
Probab=64.50 E-value=13 Score=19.33 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCCC--EEEEECCCCCCCEEEEECCEEE
Q ss_conf 999999999861996--3995079988727898889799
Q gi|254780165|r 10 IKKLERYLKRVFGSG--IAVQSRENQSDSVEVLMNSEFI 46 (71)
Q Consensus 10 i~klq~yLr~~F~~~--i~v~~r~~~~DSaEV~i~~Efi 46 (71)
..-++..|..+|.+. ..+...|....+-||++++|-|
T Consensus 19 a~~laqeLl~tF~~~l~~~~~l~p~~~G~FeV~vdgelV 57 (96)
T 2npb_A 19 YLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLV 57 (96)
T ss_dssp HHHHHHHHHHHSBTTEEEEECCCSSCCSCCEEEETTEEE
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCEEE
T ss_conf 999999999877986635871388998689999899998
No 3
>>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae} (A:)
Probab=50.33 E-value=23 Score=17.91 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCC-EEEEECCCCCCCEEEEECCEEE
Q ss_conf 999999999861996-3995079988727898889799
Q gi|254780165|r 10 IKKLERYLKRVFGSG-IAVQSRENQSDSVEVLMNSEFI 46 (71)
Q Consensus 10 i~klq~yLr~~F~~~-i~v~~r~~~~DSaEV~i~~Efi 46 (71)
..-++..|..+|.+. ..|...|....+-||.+++|-|
T Consensus 20 a~~laqeLl~tF~~~l~evsl~p~~~G~FeV~vdgelV 57 (105)
T 2p0g_A 20 SAWLSQELLHTFSEEIEYVALHPDTGGRFEIFCNGVQI 57 (105)
T ss_dssp HHHHHHHHHHHTTTTEEEEEEEEESTTCEEEEETTEEE
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCEEE
T ss_conf 99999999986665456099798899349999899898
No 4
>>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} (A:364-497)
Probab=49.53 E-value=17 Score=18.67 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=27.8
Q ss_pred HHHCC-C-CEEEEECCCCCCCEEEEECCEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 98619-9-6399507998872789888979999984346782578998454
Q gi|254780165|r 18 KRVFG-S-GIAVQSRENQSDSVEVLMNSEFIGLVYRNDDEEEISYHFDMSI 66 (71)
Q Consensus 18 r~~F~-~-~i~v~~r~~~~DSaEV~i~~EfiGvi~~D~eeGe~sY~f~MtI 66 (71)
|++|. + +-....-....|.|+||++++++|..+.-. ..+.|..+.
T Consensus 25 r~~~~~~~~~~~L~f~~v~~~a~V~vNG~~vG~~~~~~----~~~~~~itl 71 (134)
T 3d3a_A 25 RTSLSASDKEQTLLITEAHDWAQVFLNGKKLATLSRLK----GEGVVKLPP 71 (134)
T ss_dssp EEEECCBSSCEEEEEEEEESEEEEEETTEEEEEEETTT----TCCEEEECC
T ss_pred EEEECCCCCCCEEEEECCCCEEEEEECCEEEEEEECCC----CCEEEECCC
T ss_conf 98854778641389750685799998886899996134----420674245
No 5
>>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} (A:)
Probab=47.67 E-value=25 Score=17.67 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCC-EEEEECCCCCCCEEEEECCEEE
Q ss_conf 999999999861996-3995079988727898889799
Q gi|254780165|r 10 IKKLERYLKRVFGSG-IAVQSRENQSDSVEVLMNSEFI 46 (71)
Q Consensus 10 i~klq~yLr~~F~~~-i~v~~r~~~~DSaEV~i~~Efi 46 (71)
..-++..|..+|.+. ..|...|....+-||.++++-|
T Consensus 29 a~~laqeLl~tF~~~l~ev~l~pg~~G~FeV~vdg~lI 66 (107)
T 3dex_A 29 AAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVV 66 (107)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEEEESSSCEEEEETTEEE
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCEEE
T ss_conf 99999999986554467089788899129999899998
No 6
>>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PSI, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} (A:)
Probab=46.63 E-value=23 Score=17.90 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCC-EEEEECCCCCCCEEEEECCEEE
Q ss_conf 999999999861996-3995079988727898889799
Q gi|254780165|r 10 IKKLERYLKRVFGSG-IAVQSRENQSDSVEVLMNSEFI 46 (71)
Q Consensus 10 i~klq~yLr~~F~~~-i~v~~r~~~~DSaEV~i~~Efi 46 (71)
..-++..|..+|.+. ..|...|....+-||.+++|-|
T Consensus 24 a~~laqeLl~tF~~~l~eVsl~pg~~G~FeV~vdg~lV 61 (105)
T 2fa8_A 24 AGWXAQEILQTFASDIGEVSLIPSTGGLFEITVDGTII 61 (105)
T ss_dssp HHHHHHHHHHHHGGGCSEEEEEEECTTCEEEEETTEEE
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEE
T ss_conf 99999999986576566298688899379999899998
No 7
>>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, protein structure initiative; 1.90A {Bacteroides fragilis nctc 9343} (A:556-667)
Probab=43.59 E-value=29 Score=17.29 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=23.4
Q ss_pred CCCCEEEEECCEEEEEEEEECCCCCEEEEE
Q ss_conf 887278988897999998434678257899
Q gi|254780165|r 33 QSDSVEVLMNSEFIGLVYRNDDEEEISYHF 62 (71)
Q Consensus 33 ~~DSaEV~i~~EfiGvi~~D~eeGe~sY~f 62 (71)
.-+++|++++++.+|.--.|.+.+=+.++.
T Consensus 44 N~~~VeL~lNG~slG~~~~~~~~~~~~~~V 73 (112)
T 3cmg_A 44 TAPEAELFVNGVSCGKQKADTYSTVVWKNV 73 (112)
T ss_dssp SSSEEEEEETTEEEEEEECCTTSEEEEEEE
T ss_pred CCCEEEEEECCEEEEEEECCCCCEEEEEEE
T ss_conf 899899999999999897798976999640
No 8
>>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} (A:)
Probab=42.07 E-value=16 Score=18.86 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=32.3
Q ss_pred ECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
Q ss_conf 5899999999999986199639950799887278988
Q gi|254780165|r 5 MRADEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLM 41 (71)
Q Consensus 5 M~~~Ei~klq~yLr~~F~~~i~v~~r~~~~DSaEV~i 41 (71)
+.......+..+|++.|.+-..++|......|.|+|+
T Consensus 140 ~~~~~~~~l~~~l~~~F~~v~~~KP~aSR~~s~E~y~ 176 (191)
T 3dou_A 140 FQGDXTNDFIAIWRKNFSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp ECSTHHHHHHHHHGGGEEEEEEECC------CCEEEE
T ss_pred ECCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEE
T ss_conf 6386899999999985398999899684668873999
No 9
>>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} (A:1-70)
Probab=34.00 E-value=27 Score=17.52 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=39.4
Q ss_pred EEECHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCEEEE-ECCEEEEEEEEECCCC
Q ss_conf 0458999999999999861996-3995079988727898-8897999998434678
Q gi|254780165|r 3 VRMRADEIKKLERYLKRVFGSG-IAVQSRENQSDSVEVL-MNSEFIGLVYRNDDEE 56 (71)
Q Consensus 3 i~M~~~Ei~klq~yLr~~F~~~-i~v~~r~~~~DSaEV~-i~~EfiGvi~~D~eeG 56 (71)
+..++.-.+.|..--.-.|.+. ..+.+...++|-++|+ -.++|||.=+-+-.--
T Consensus 4 v~i~~~a~~~i~~g~pwi~~~~I~~v~g~~~~GdiV~v~d~~g~~lg~G~~n~~S~ 59 (70)
T 2as0_A 4 VVVDAQAARAIGKGAXIVFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFANPNSN 59 (70)
T ss_dssp EEECHHHHHHHHTTCCEEEGGGEEEEESCCCTTCEEEEEETTCCEEEEEEECTTSS
T ss_pred EEECCCHHHHHHCCCCEEECHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCC
T ss_conf 99882156586469977975343025699988998999917997999999889998
No 10
>>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, metal-binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis TAC125} (A:317-353,A:409-442)
Probab=33.96 E-value=23 Score=17.91 Aligned_cols=21 Identities=5% Similarity=0.276 Sum_probs=19.0
Q ss_pred EECHHHHHHHHHHHHHHCCCC
Q ss_conf 458999999999999861996
Q gi|254780165|r 4 RMRADEIKKLERYLKRVFGSG 24 (71)
Q Consensus 4 ~M~~~Ei~klq~yLr~~F~~~ 24 (71)
.++..||+-|-+|.|..|||.
T Consensus 37 ~LsD~EIAaVlTYIRnsWGN~ 57 (71)
T 2zoo_A 37 CLNDEDIANVITFVLNNWDNA 57 (71)
T ss_dssp HCCHHHHHHHHHHHHTSTTCC
T ss_pred HCCHHHHHHHHHHHHHHCCCC
T ss_conf 289999999999999855899
No 11
>>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii} (A:1-34)
Probab=32.34 E-value=34 Score=16.94 Aligned_cols=15 Identities=20% Similarity=0.806 Sum_probs=12.7
Q ss_pred EEECCEEEEEEEEEC
Q ss_conf 988897999998434
Q gi|254780165|r 39 VLMNSEFIGLVYRND 53 (71)
Q Consensus 39 V~i~~EfiGvi~~D~ 53 (71)
|-+++-|||.||+-.
T Consensus 3 vqi~dyfigmifkgn 17 (34)
T 2g7h_A 3 IQIEEYFIGMIFKGN 17 (34)
T ss_dssp EEETTEEEEEEESSS
T ss_pred EEECCEEEEEEEECC
T ss_conf 786670899999676
No 12
>>3gm8_A Glycoside hydrolase family 2, candidate beta- glycosidase; structural genomics, PSI-2, protein structure initiative; 2.40A {Bacteroides vulgatus atcc 8482} (A:578-688)
Probab=30.43 E-value=48 Score=16.05 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=33.1
Q ss_pred ECHHHHHHHHHHHHHHC-CC-C-EEEEEC------C---------CCCCCEEEEECCEEEEEEEEECC
Q ss_conf 58999999999999861-99-6-399507------9---------98872789888979999984346
Q gi|254780165|r 5 MRADEIKKLERYLKRVF-GS-G-IAVQSR------E---------NQSDSVEVLMNSEFIGLVYRNDD 54 (71)
Q Consensus 5 M~~~Ei~klq~yLr~~F-~~-~-i~v~~r------~---------~~~DSaEV~i~~EfiGvi~~D~e 54 (71)
|+..-+.|...|+.+.. .+ + +-+.+. + ..-|++|+++++..||....++.
T Consensus 11 ~D~~r~pK~~~y~~~s~w~~~p~v~i~~~w~w~~~~~~~~~v~VySN~d~VeL~lNGk~lg~~~~~~~ 78 (111)
T 3gm8_A 11 IDIAAIPKDAYFLYQSLWTDKPMVHLLPHWTHPGKEGKTIPVVIYTNCDAVELFINNVSLGSKPYTGE 78 (111)
T ss_dssp BCTTSCBCHHHHHHHHHHCCSCCEEEESCSCCTTCBTSEEEEEEEESSSEEEEEETTEEEEEEECSSS
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEEECCCC
T ss_conf 08998797999999974646994777567667788896679999908997999999999557846788
No 13
>>3gm8_A Glycoside hydrolase family 2, candidate beta- glycosidase; structural genomics, PSI-2, protein structure initiative; 2.40A {Bacteroides vulgatus atcc 8482} (A:1-164)
Probab=29.81 E-value=48 Score=16.05 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=23.6
Q ss_pred EEECCCCCCCEEEEECCEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 950799887278988897999998434678257899845
Q gi|254780165|r 27 VQSRENQSDSVEVLMNSEFIGLVYRNDDEEEISYHFDMS 65 (71)
Q Consensus 27 v~~r~~~~DSaEV~i~~EfiGvi~~D~eeGe~sY~f~Mt 65 (71)
...-...++.|+||++++++|.. +.+-..|.|.+|
T Consensus 86 ~L~f~gv~~~a~V~vNG~~vg~~----~~~~~~~~~dIt 120 (164)
T 3gm8_A 86 QILFEGVYLNSEVWINGHWLGKR----PNGYISFVYDLT 120 (164)
T ss_dssp EEEESCCBSCEEEEETTEEEEEE----CCSSCCEEEECG
T ss_pred EEEECCCCCEEEEEECCEEEEEE----CCCCCCEEEECH
T ss_conf 99989028499999999998178----287453899787
No 14
>>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* (A:145-203)
Probab=28.67 E-value=52 Score=15.87 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=22.8
Q ss_pred EECHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 45899999999999986199639950799
Q gi|254780165|r 4 RMRADEIKKLERYLKRVFGSGIAVQSREN 32 (71)
Q Consensus 4 ~M~~~Ei~klq~yLr~~F~~~i~v~~r~~ 32 (71)
+.+.+|...|+.-|..+|+=...+....+
T Consensus 22 sFt~~Ev~~L~~~L~~kf~L~~si~~~~~ 50 (59)
T 3c0w_A 22 SFTFEEVEYLVKGLRNKFQLNCYVKINKN 50 (59)
T ss_dssp TSCHHHHHHHHHHHHHHHCCCEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 89999999999999987194799996596
No 15
>>3fn9_A Putative beta-galactosidase; structural genomics, glycosidase, hydrolase, PSI-2; 2.70A {Bacteroides fragilis nctc 9343} (A:1-161)
Probab=26.23 E-value=57 Score=15.61 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=23.5
Q ss_pred EEECCCCCCCEEEEECCEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 950799887278988897999998434678257899845
Q gi|254780165|r 27 VQSRENQSDSVEVLMNSEFIGLVYRNDDEEEISYHFDMS 65 (71)
Q Consensus 27 v~~r~~~~DSaEV~i~~EfiGvi~~D~eeGe~sY~f~Mt 65 (71)
...-...+..++||++++++|.-. .+-..|.|.+|
T Consensus 80 ~L~f~~v~~~~~v~iNG~~vg~~~----~~~~~~~~dIt 114 (161)
T 3fn9_A 80 FLRFEGVGACAEVYVNGKLAGTHK----GGYSAFACEIG 114 (161)
T ss_dssp EEEESCCBSEEEEEETTEEEEEEE----CTTSCEEEECG
T ss_pred EEEECCCCCEEEEEECCEEEEEEE----CCCCEEEEECH
T ss_conf 999882691899999998970881----87510899685
No 16
>>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein structure initiative; 2.10A {Bordetella parapertussis 12822} (A:)
Probab=26.13 E-value=57 Score=15.60 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCC-EEEEECCCCCCCEEEEECCEEE
Q ss_conf 999999999861996-3995079988727898889799
Q gi|254780165|r 10 IKKLERYLKRVFGSG-IAVQSRENQSDSVEVLMNSEFI 46 (71)
Q Consensus 10 i~klq~yLr~~F~~~-i~v~~r~~~~DSaEV~i~~Efi 46 (71)
..-++.-|..+|.+. -.|...|....+-||+++++-|
T Consensus 25 a~~laqeLl~tF~~~i~ev~l~p~~~G~FeV~vng~lV 62 (108)
T 2ojl_A 25 AAWXAQELLSTFGADLGEVALVPGTGGVFRIHYNGAPL 62 (108)
T ss_dssp HHHHHHHHHHHHGGGSSEEEEEEECTTCEEEEETTEEE
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEE
T ss_conf 99999999986577576199887899489999899897
No 17
>>1y7r_A Hypothetical protein SA2161; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus} (A:)
Probab=22.73 E-value=67 Score=15.21 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=46.6
Q ss_pred CCEEECHHHHHHHHHHHHHHCCCCEE---E-EECCCCCCCEEEEECCEEEEEEEEECCCCCEEEEEEEEEEE
Q ss_conf 92045899999999999986199639---9-50799887278988897999998434678257899845441
Q gi|254780165|r 1 MEVRMRADEIKKLERYLKRVFGSGIA---V-QSRENQSDSVEVLMNSEFIGLVYRNDDEEEISYHFDMSILE 68 (71)
Q Consensus 1 m~i~M~~~Ei~klq~yLr~~F~~~i~---v-~~r~~~~DSaEV~i~~EfiGvi~~D~eeGe~sY~f~MtILd 68 (71)
|+|..++.++..+.+..+..|..+.. + ..-.+..-..-++.+++.+|.+.--.+.....+--.++|..
T Consensus 2 M~ir~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~v~~ 73 (133)
T 1y7r_A 2 VKVTYDIPTCEDYCALRINAGXSPKTREAAEKGLPNALFTVTLYDKDRLIGXGRVIGDGGTVFQIVDIAVLK 73 (133)
T ss_dssp CEEECSCCCHHHHHHHHHHTTCCCCCHHHHHHHGGGCSEEEEEEETTEEEEEEEEEECSSSEEEEEEEEECG
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEEECCEEEEEEEEEECCCCEEEEEEEEECH
T ss_conf 289957999999999999769498999999988537839999999999999999996258699995312116
No 18
>>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A (A:)
Probab=22.64 E-value=67 Score=15.20 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCCC-EEEEECCCCCCCEEEEECCEEE
Q ss_conf 999999999861996-3995079988727898889799
Q gi|254780165|r 10 IKKLERYLKRVFGSG-IAVQSRENQSDSVEVLMNSEFI 46 (71)
Q Consensus 10 i~klq~yLr~~F~~~-i~v~~r~~~~DSaEV~i~~Efi 46 (71)
..-++..|..+|.+. ..|...|....+-||.++++-|
T Consensus 22 a~~laqeLl~tF~~~l~evsl~pg~~G~FeV~vdg~lV 59 (104)
T 2oka_A 22 AAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQV 59 (104)
T ss_dssp HHHHHHHHHHHSTTTCSEEEEEEECTTCEEEEETTEEE
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCEEE
T ss_conf 99999999986666466299898899449999899997
No 19
>>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} (A:1-71)
Probab=22.49 E-value=26 Score=17.56 Aligned_cols=55 Identities=9% Similarity=0.225 Sum_probs=36.7
Q ss_pred CCEEECHHHHHHHHHHHHHHCCCCE-EEEECCCCCCCEEEE-ECCEEEEEEEEECCC
Q ss_conf 9204589999999999998619963-995079988727898-889799999843467
Q gi|254780165|r 1 MEVRMRADEIKKLERYLKRVFGSGI-AVQSRENQSDSVEVL-MNSEFIGLVYRNDDE 55 (71)
Q Consensus 1 m~i~M~~~Ei~klq~yLr~~F~~~i-~v~~r~~~~DSaEV~-i~~EfiGvi~~D~ee 55 (71)
|++..++..-++|...---.|.+.+ .+.+++..+|-++|+ -+++|||+-|-+..-
T Consensus 3 ~kv~l~~~~~~~i~~ghPwiy~~~i~~~~~~~~~G~iV~v~~~~g~~lg~G~~n~~S 59 (71)
T 3c0k_A 3 VRLVLAKGREKSLLRRHPWVFSGAVARXEGKASLGETIDIVDHQGKWLARGAYSPAS 59 (71)
T ss_dssp CEEEECTTCCHHHHTTCSEEEGGGEEEEESCCCTTCEEEEECTTCCEEEEEEECTTS
T ss_pred EEEEECCCCHHHHHCCCCEEECHHHCCCCCCCCCCCEEEEECCCCCEEEEEEECCCC
T ss_conf 479988885536755998370611133679999999899984899789999987999
No 20
>>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} (A:1-221)
Probab=22.00 E-value=68 Score=15.18 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=24.9
Q ss_pred EEEECCCCCCCEEEEECCEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 9950799887278988897999998434678257899845
Q gi|254780165|r 26 AVQSRENQSDSVEVLMNSEFIGLVYRNDDEEEISYHFDMS 65 (71)
Q Consensus 26 ~v~~r~~~~DSaEV~i~~EfiGvi~~D~eeGe~sY~f~Mt 65 (71)
....=...+..|+||++++++|.- +.+-..|.|.+|
T Consensus 140 i~L~f~gv~~~a~V~vNG~~vg~~----~~~~~p~~~dIt 175 (221)
T 1yq2_A 140 LTLRFDGVESRYKVWVNGQEIGVG----SGSRLAQEFDVS 175 (221)
T ss_dssp EEEEESCEESCEEEEETTEEEEEE----CCTTSCEEEECT
T ss_pred EEEEECCCCCEEEEEECCEEEEEE----CCCCCCEEEECH
T ss_conf 999989118188999999896287----399623899795
Done!