Query gi|254780165|ref|YP_003064578.1| hypothetical protein CLIBASIA_00240 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 71
No_of_seqs 97 out of 99
Neff 3.8
Searched_HMMs 23785
Date Sun May 22 19:45:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780165.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npb_A Selenoprotein W; struct 58.6 12 0.00049 18.7 5.2 37 10-46 19-57 (96)
2 3eld_A Methyltransferase; flav 41.7 22 0.00093 17.1 3.9 36 7-44 197-232 (300)
3 3dou_A Ribosomal RNA large sub 40.1 12 0.00052 18.6 2.1 34 8-41 143-176 (191)
4 1ej0_A FTSJ; methyltransferase 36.5 21 0.00089 17.2 2.8 34 8-41 140-173 (180)
5 3evf_A RNA-directed RNA polyme 35.1 28 0.0012 16.5 3.3 35 6-42 189-223 (277)
6 2p41_A Type II methyltransfera 33.2 30 0.0013 16.3 3.9 35 6-42 196-230 (305)
7 1h2i_A RAD52, DNA repair prote 33.2 30 0.0013 16.3 3.3 53 3-57 29-102 (209)
8 1c52_A Cytochrome-C552; electr 31.8 24 0.001 16.9 2.4 21 4-24 74-94 (131)
9 3bv8_A Tetrahydrodipicolinate 25.7 41 0.0017 15.5 3.2 47 4-54 3-55 (87)
10 2fa8_A Hypothetical protein AT 25.2 42 0.0018 15.5 3.5 37 10-46 24-61 (105)
11 3dex_A SAV_2001; alpha-beta pr 24.4 44 0.0018 15.4 4.3 41 11-54 30-71 (107)
12 2nyu_A Putative ribosomal RNA 22.2 34 0.0014 16.1 1.8 33 9-41 150-182 (196)
13 2plw_A Ribosomal RNA methyltra 20.9 29 0.0012 16.5 1.2 33 9-41 159-191 (201)
No 1
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=58.61 E-value=12 Score=18.71 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHCCCCE--EEEECCCCCCCEEEEECCEEE
Q ss_conf 9999999998619963--995079988727898889799
Q gi|254780165|r 10 IKKLERYLKRVFGSGI--AVQSRENQSDSVEVLMNSEFI 46 (71)
Q Consensus 10 i~klq~yLr~~F~~~i--~v~~r~~~~DSaEV~i~~Efi 46 (71)
...++.-|..+|++.+ ....+|..+..-||.++++-|
T Consensus 19 a~~laqeLl~tF~~~i~~~~~l~p~~~G~FeV~vdg~lI 57 (96)
T 2npb_A 19 YLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLV 57 (96)
T ss_dssp HHHHHHHHHHHSBTTEEEEECCCSSCCSCCEEEETTEEE
T ss_pred HHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEEECCEEE
T ss_conf 999999999877863342264035897489999899998
No 2
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase, viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=41.67 E-value=22 Score=17.12 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCE
Q ss_conf 99999999999986199639950799887278988897
Q gi|254780165|r 7 ADEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLMNSE 44 (71)
Q Consensus 7 ~~Ei~klq~yLr~~F~~~i~v~~r~~~~DSaEV~i~~E 44 (71)
++-+.+|+ .|++.|+.-+ ++++.+-..|.|+|+=..
T Consensus 197 ~~~~e~L~-~lq~~F~~v~-vrkPaSR~sS~E~Y~Va~ 232 (300)
T 3eld_A 197 PDVIEKLE-RLQLRFGGGI-VRVPFSRNSTHEMYYISG 232 (300)
T ss_dssp HHHHHHHH-HHHHHHCCEE-ECCTTSCTTCCCEEEESS
T ss_pred HHHHHHHH-HHHHHCCCEE-EECCCCCCCCCCEEEEEC
T ss_conf 66999999-9998749989-969999998841899944
No 3
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium}
Probab=40.10 E-value=12 Score=18.57 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
Q ss_conf 9999999999986199639950799887278988
Q gi|254780165|r 8 DEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLM 41 (71)
Q Consensus 8 ~Ei~klq~yLr~~F~~~i~v~~r~~~~DSaEV~i 41 (71)
.+...+-..|++.|..--.++|......|.|+|+
T Consensus 143 ~~~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Yl 176 (191)
T 3dou_A 143 DMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp THHHHHHHHHGGGEEEEEEECC------CCEEEE
T ss_pred CCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEE
T ss_conf 7899999999986299999999584767864999
No 4
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=36.54 E-value=21 Score=17.23 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
Q ss_conf 9999999999986199639950799887278988
Q gi|254780165|r 8 DEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLM 41 (71)
Q Consensus 8 ~Ei~klq~yLr~~F~~~i~v~~r~~~~DSaEV~i 41 (71)
.+...+-..|++.|..-...+|......|.|+|+
T Consensus 140 ~~~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Y~ 173 (180)
T 1ej0_A 140 EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYI 173 (180)
T ss_dssp TTHHHHHHHHHHHEEEEEEECCTTSCTTCCEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE
T ss_conf 7899999999830498999999886657864999
No 5
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, ATP-binding, capsid protein, cleavage on PAIR of basic residues; HET: GTA SAH; 1.45A {Yellow fever virus 17D} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=35.13 E-value=28 Score=16.51 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEC
Q ss_conf 8999999999999861996399507998872789888
Q gi|254780165|r 6 RADEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLMN 42 (71)
Q Consensus 6 ~~~Ei~klq~yLr~~F~~~i~v~~r~~~~DSaEV~i~ 42 (71)
.+..+.+|+ -|++.|+..+ ++++.+-.-|.|+|+=
T Consensus 189 ~~e~~e~L~-~lq~~F~~v~-vrkPaSR~sS~E~Y~V 223 (277)
T 3evf_A 189 MPDVLEKLE-LLQRRFGGTV-IRNPLSRNSTHEMYYV 223 (277)
T ss_dssp SHHHHHHHH-HHHHHHCCEE-ECCTTSCTTCCCEEEE
T ss_pred CHHHHHHHH-HHHHHCCCEE-EECCCCCCCCCCEEEE
T ss_conf 988999999-9998749988-8289988787567999
No 6
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A*
Probab=33.21 E-value=30 Score=16.32 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEC
Q ss_conf 8999999999999861996399507998872789888
Q gi|254780165|r 6 RADEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLMN 42 (71)
Q Consensus 6 ~~~Ei~klq~yLr~~F~~~i~v~~r~~~~DSaEV~i~ 42 (71)
+++.+.+|.. |++.||.. .|+.+-+...|+|.|.-
T Consensus 196 ~~~vle~L~~-lqr~fgg~-lVR~P~SRnst~EmY~v 230 (305)
T 2p41_A 196 MSSVIEKMEA-LQRKHGGA-LVRNPLSRNSTHEMYWV 230 (305)
T ss_dssp SHHHHHHHHH-HHHHHCCE-EECCTTSCTTCCCEEEE
T ss_pred CHHHHHHHHH-HHHHHCCE-EECCCCCCCCCCEEEEE
T ss_conf 9789999999-99986994-65078887775227887
No 7
>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} SCOP: d.50.1.3 PDB: 1kn0_A
Probab=33.21 E-value=30 Score=16.32 Aligned_cols=53 Identities=9% Similarity=0.208 Sum_probs=36.7
Q ss_pred EEECHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCEEEEECC--------------------EEEEEEEEECCCCC
Q ss_conf 0458999999999999861996-3995079988727898889--------------------79999984346782
Q gi|254780165|r 3 VRMRADEIKKLERYLKRVFGSG-IAVQSRENQSDSVEVLMNS--------------------EFIGLVYRNDDEEE 57 (71)
Q Consensus 3 i~M~~~Ei~klq~yLr~~F~~~-i~v~~r~~~~DSaEV~i~~--------------------EfiGvi~~D~eeGe 57 (71)
..-+..|++.||.-|++.++++ |+.++-| ..+---||.+ .-+.+.+.|++.|-
T Consensus 29 ~~~t~~e~~~iq~~L~~~l~~e~Is~R~g~--gg~kvsYIeg~~vI~lANeiFGfdGWSs~I~~~~~d~~d~~~~k 102 (209)
T 1h2i_A 29 CQYTAEEYQAIQKALRQRLGPEYISSRMAG--GGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGK 102 (209)
T ss_dssp CCCCHHHHHHHHHHHHCCBCTTTEEEEECT--TSCEEEEECHHHHHHHHHHHHCTTTEEEEEEEEEEEEEEESSSS
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHCCCCCC--CCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCC
T ss_conf 777999999999998355798882204679--98257762079999999985188854002144344466236894
No 8
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=31.81 E-value=24 Score=16.93 Aligned_cols=21 Identities=14% Similarity=0.427 Sum_probs=18.5
Q ss_pred EECHHHHHHHHHHHHHHCCCC
Q ss_conf 458999999999999861996
Q gi|254780165|r 4 RMRADEIKKLERYLKRVFGSG 24 (71)
Q Consensus 4 ~M~~~Ei~klq~yLr~~F~~~ 24 (71)
.++..||..|=+|+|..|||.
T Consensus 74 ~LsD~eI~~v~~YIr~~~gn~ 94 (131)
T 1c52_A 74 QLKDEEIAAVLNHIATAWGDA 94 (131)
T ss_dssp TSCHHHHHHHHHHHHHTTSTG
T ss_pred CCCHHHHHHHHHHHHHHCCCC
T ss_conf 799999999999999864897
No 9
>3bv8_A Tetrahydrodipicolinate acetyltransferase; PFAM08503, structural genomics, PSI-2, protein structure initiative; 1.75A {Staphylococcus aureus subsp}
Probab=25.67 E-value=41 Score=15.55 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=31.6
Q ss_pred EECHHHHHHHHHHHHHHC-CCC--EEEEECCCC---CCCEEEEECCEEEEEEEEECC
Q ss_conf 458999999999999861-996--399507998---872789888979999984346
Q gi|254780165|r 4 RMRADEIKKLERYLKRVF-GSG--IAVQSRENQ---SDSVEVLMNSEFIGLVYRNDD 54 (71)
Q Consensus 4 ~M~~~Ei~klq~yLr~~F-~~~--i~v~~r~~~---~DSaEV~i~~EfiGvi~~D~e 54 (71)
.|++.||.+ |....= .++ .-++..-.. ++++++|.++.| ||+|-|-+
T Consensus 3 ~mdA~eII~---yI~~skKkTPVKvYvkG~l~~i~~~~~~k~fg~~~~-~vlfGd~~ 55 (87)
T 3bv8_A 3 ALTAEEIIQ---YISDAKKFTPIKVYLNGNFEGITYPESFKVFGSEQS-KVIFCEAD 55 (87)
T ss_dssp CCCHHHHHH---HHHHHTTCCEEEEEEEECCTTCCCCTTCEEEEETTE-EEEEEEHH
T ss_pred CCCHHHHHH---HHHCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCC-EEEEECHH
T ss_conf 679999999---997189889879999156225767652489936985-79993199
No 10
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PSI, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=25.23 E-value=42 Score=15.50 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHCCCC-EEEEECCCCCCCEEEEECCEEE
Q ss_conf 999999999861996-3995079988727898889799
Q gi|254780165|r 10 IKKLERYLKRVFGSG-IAVQSRENQSDSVEVLMNSEFI 46 (71)
Q Consensus 10 i~klq~yLr~~F~~~-i~v~~r~~~~DSaEV~i~~Efi 46 (71)
...++.-|..+|.+. ..|.-.|.....-||.++++-|
T Consensus 24 a~wlaqELl~tF~~~i~evsL~P~~~G~FeV~vdg~lI 61 (105)
T 2fa8_A 24 AGWMAQEILQTFASDIGEVSLIPSTGGLFEITVDGTII 61 (105)
T ss_dssp HHHHHHHHHHHHGGGCSEEEEEEECTTCEEEEETTEEE
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEE
T ss_conf 99999999986565354498687899179999899999
No 11
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis}
Probab=24.38 E-value=44 Score=15.40 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCC-EEEEECCCCCCCEEEEECCEEEEEEEEECC
Q ss_conf 99999999861996-399507998872789888979999984346
Q gi|254780165|r 11 KKLERYLKRVFGSG-IAVQSRENQSDSVEVLMNSEFIGLVYRNDD 54 (71)
Q Consensus 11 ~klq~yLr~~F~~~-i~v~~r~~~~DSaEV~i~~EfiGvi~~D~e 54 (71)
.-++.-|..+|++. ..|.-.|.....-||.+++|- ||.-.|
T Consensus 30 ~wlaqELL~tF~~~i~eVsLvPg~gGvFeV~vdgel---I~sRke 71 (107)
T 3dex_A 30 AWLAQELLTTFETELTELALKPGTGGVFVVRVDDEV---VWDRRE 71 (107)
T ss_dssp HHHHHHHHHHSTTTEEEEEEEEESSSCEEEEETTEE---EEEHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEE---EEECCC
T ss_conf 999999998677545639978779916999989999---997177
No 12
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=22.24 E-value=34 Score=16.06 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
Q ss_conf 999999999986199639950799887278988
Q gi|254780165|r 9 EIKKLERYLKRVFGSGIAVQSRENQSDSVEVLM 41 (71)
Q Consensus 9 Ei~klq~yLr~~F~~~i~v~~r~~~~DSaEV~i 41 (71)
+...+-.-|++.|..-..++|....+.|.|+|+
T Consensus 150 ~~~~l~~~l~~~F~~v~~~KP~aSR~~ssE~Yl 182 (196)
T 2nyu_A 150 QSRRLQRRLTEEFQNVRIIKPEASRKESSEVYF 182 (196)
T ss_dssp GGHHHHHHHHHHEEEEEEECCC--------EEE
T ss_pred CHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEE
T ss_conf 599999999974698999889882789844999
No 13
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum 3D7}
Probab=20.91 E-value=29 Score=16.47 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
Q ss_conf 999999999986199639950799887278988
Q gi|254780165|r 9 EIKKLERYLKRVFGSGIAVQSRENQSDSVEVLM 41 (71)
Q Consensus 9 Ei~klq~yLr~~F~~~i~v~~r~~~~DSaEV~i 41 (71)
+...|-.-|++.|..=..++|......|.|+|+
T Consensus 159 ~~~~l~~~l~~~F~~V~~~KP~aSR~~ssE~Yl 191 (201)
T 2plw_A 159 QTNNLKTYLKGMFQLVHTTKPKASRNESREIYL 191 (201)
T ss_dssp THHHHHHHHHTTEEEEEECCCC-----CCEEEE
T ss_pred CHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEE
T ss_conf 799999999972398999889774778860999
Done!