HHsearch alignment for GI: 254780166 and conserved domain: COG3243
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism].
Probab=99.23 E-value=3.5e-11 Score=85.56 Aligned_cols=221 Identities=14% Similarity=0.134 Sum_probs=122.5
Q ss_pred CCCEEEEECCCCCCCHH--HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98789999878888001--2217999999986898999964765542222222222221222222222222222222222
Q gi|254780166|r 25 DAPTILLIHGLASSVQT--NWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGISKVHV 102 (261)
Q Consensus 25 ~~~~vv~iHG~~~~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~~~~s~~~~~~di~~~i~~l~~~~~~l 102 (261)
T Consensus 106 ~~~PlLiVpP~iNk~yI~DL~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~edYi~e~l~~aid~V~~itg~~dInl 185 (445)
T COG3243 106 LKRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYILEGLSEAIDTVKDITGQKDINL 185 (445)
T ss_pred CCCCEEEECCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 78844863443375247867877408999997598368996158607655346999999999999999998747651235
Q ss_pred CCCCCCCCCHHHHHHHCCCC-CCCEEEECCCCCCCC-------CCHHHHHHHHHHHHCCC-CCHH---------------
Q ss_conf 34434443101333210235-652389628856331-------10356999999863111-1000---------------
Q gi|254780166|r 103 MGYSMGARIACSMVLFYPSY-VRSVILGGVGSVLYD-------SDVVDWQSLIDSFLLPS-IDEV--------------- 158 (261)
Q Consensus 103 iGhS~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~--------------- 158 (261)
T Consensus 186 iGyC~GGt~~~~a~a~~~~~~I~S~T~~ts~~Df~~~g~l~~f~~~~~~~~~~~~~~~~g~ipg~~ma~~F~mLrp~dli 265 (445)
T COG3243 186 IGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSHAGDLGIFANEATIEALDADIVQKGILPGWYMAIVFFLLRPNDLI 265 (445)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH
T ss_conf 54614569999999974431224467773201003575100126878999998642221678808999999863931101
Q ss_pred -----------HHHHHHHHCCCCC---CCCCCCHHHHH-HHHH-------HHCCCCCHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf -----------0111000000003---47665413567-7765-------410122001210035760699847888788
Q gi|254780166|r 159 -----------QNPLGKKFRKFAD---LDPGNDLKALA-SCLS-------MIRKPFCQDDLYRIDVPVLIAVGSQDDLAG 216 (261)
Q Consensus 159 -----------~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~-------~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~ 216 (261)
T Consensus 266 w~~fV~nyl~ge~pl~fdllyWn~Dst~~~~~~~~~~Lrn~y~~N~L~~g~~~v~G~~VdL~~It~pvy~~a~~~DhIaP 345 (445)
T COG3243 266 WNYFVNNYLDGEQPLPFDLLYWNADSTRLPGAAHSEYLRNFYLENRLIRGGLEVSGTMVDLGDITCPVYNLAAEEDHIAP 345 (445)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHCCCEEECCEEECHHHCCCCEEEEECCCCCCCC
T ss_conf 68889886178888723678860778657668999999999973744306548888894223266423886303465566
Q ss_pred CH--HHHHHHCCCCEEEEECCCCCCCCC-CCH
Q ss_conf 07--999996799799998888738434-848
Q gi|254780166|r 217 SP--QELMSFIPSSQYLNICRRDHLLAV-GDK 245 (261)
Q Consensus 217 ~~--~~l~~~~p~~~~~~i~~~gH~~~~-e~p 245 (261)
T Consensus 346 ~~Sv~~g~~l~~g~~~f~l~~sGHIa~vVN~p 377 (445)
T COG3243 346 WSSVYLGARLLGGEVTFVLSRSGHIAGVVNPP 377 (445)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCEEEEEECCC
T ss_conf 89898898754996499983686078885782