HHsearch alignment for GI: 254780166 and conserved domain: COG3946

>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion].
Probab=96.12  E-value=0.0053  Score=36.95  Aligned_cols=178  Identities=16%  Similarity=0.151  Sum_probs=93.1

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf             8789999878888001221799999998689899996476554222222222222122222222222222----222222
Q gi|254780166|r   26 APTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHL----GISKVH  101 (261)
Q Consensus        26 ~~~vv~iHG~~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~~~~s~~~~~~di~~~i~~l----~~~~~~  101 (261)
T Consensus       260 d~~av~~SGDGGWr~---lDk~v~~~l~~~gvpVvGvdsLRYfW~~r-------tPe~~a~Dl~r~i~~y~~~w~~~~~~  329 (456)
T COG3946         260 DTVAVFYSGDGGWRD---LDKEVAEALQKQGVPVVGVDSLRYFWSER-------TPEQIAADLSRLIRFYARRWGAKRVL  329 (456)
T ss_pred             CEEEEEEECCCCHHH---HHHHHHHHHHHCCCCEEEEEHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             569999836873656---44999999997799556430023551568-------97888777999999998863764389


Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH--HHHHHHCCCCCCCCCCCHH
Q ss_conf             23443444310133321023565238962885633110356999999863111100001--1100000000347665413
Q gi|254780166|r  102 VMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQN--PLGKKFRKFADLDPGNDLK  179 (261)
Q Consensus       102 liGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  179 (261)
T Consensus       330 liGySfGADvlP~~~n~L~~~~--------------------r~~v~~~~ll~l~~~~~fe~~v~gWlg~~~~-------  382 (456)
T COG3946         330 LIGYSFGADVLPFAYNRLPPAT--------------------RQRVRMVSLLGLGRTADFEISVEGWLGMAGE-------  382 (456)
T ss_pred             EEEECCCCHHHHHHHHHCCHHH--------------------HHHHHHHHHHHCCCCCEEEEEEEEEECCCCC-------
T ss_conf             9960466404689987588778--------------------8899999997415543279999655303776-------


Q ss_pred             HHHHHHHHHCCCCCHHHHHCCC-CCEEEEEECCCC--CCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             5677765410122001210035-760699847888--788079999967997999988887384348489999999998
Q gi|254780166|r  180 ALASCLSMIRKPFCQDDLYRID-VPVLIAVGSQDD--LAGSPQELMSFIPSSQYLNICRRDHLLAVGDKQFKQGVVNFY  255 (261)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~i~-~P~l~i~G~~D~--~~~~~~~l~~~~p~~~~~~i~~~gH~~~~e~p~~~~~i~~Fl  255 (261)
T Consensus       383 ---------g~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp~l~-----~~~~~~v~lpGgHHF-d~dy~~la~~il~~~  446 (456)
T COG3946         383 ---------GAGDVVPDIAKLPLARVQCIYGQEEKDTACPSLK-----AKGVDTVKLPGGHHF-DGDYEKLAKAILQGM  446 (456)
T ss_pred             ---------CCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCH-----HHCCEEEECCCCCCC-CCCHHHHHHHHHHHH
T ss_conf             ---------7777642555077440688745766556687641-----114346744787666-752899999999988