HHsearch alignment for GI: 254780166 and conserved domain: COG3946
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion].
Probab=96.12 E-value=0.0053 Score=36.95 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=93.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf 8789999878888001221799999998689899996476554222222222222122222222222222----222222
Q gi|254780166|r 26 APTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHL----GISKVH 101 (261)
Q Consensus 26 ~~~vv~iHG~~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~~~~s~~~~~~di~~~i~~l----~~~~~~ 101 (261)
T Consensus 260 d~~av~~SGDGGWr~---lDk~v~~~l~~~gvpVvGvdsLRYfW~~r-------tPe~~a~Dl~r~i~~y~~~w~~~~~~ 329 (456)
T COG3946 260 DTVAVFYSGDGGWRD---LDKEVAEALQKQGVPVVGVDSLRYFWSER-------TPEQIAADLSRLIRFYARRWGAKRVL 329 (456)
T ss_pred CEEEEEEECCCCHHH---HHHHHHHHHHHCCCCEEEEEHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 569999836873656---44999999997799556430023551568-------97888777999999998863764389
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH--HHHHHHCCCCCCCCCCCHH
Q ss_conf 23443444310133321023565238962885633110356999999863111100001--1100000000347665413
Q gi|254780166|r 102 VMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQN--PLGKKFRKFADLDPGNDLK 179 (261)
Q Consensus 102 liGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 179 (261)
T Consensus 330 liGySfGADvlP~~~n~L~~~~--------------------r~~v~~~~ll~l~~~~~fe~~v~gWlg~~~~------- 382 (456)
T COG3946 330 LIGYSFGADVLPFAYNRLPPAT--------------------RQRVRMVSLLGLGRTADFEISVEGWLGMAGE------- 382 (456)
T ss_pred EEEECCCCHHHHHHHHHCCHHH--------------------HHHHHHHHHHHCCCCCEEEEEEEEEECCCCC-------
T ss_conf 9960466404689987588778--------------------8899999997415543279999655303776-------
Q ss_pred HHHHHHHHHCCCCCHHHHHCCC-CCEEEEEECCCC--CCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 5677765410122001210035-760699847888--788079999967997999988887384348489999999998
Q gi|254780166|r 180 ALASCLSMIRKPFCQDDLYRID-VPVLIAVGSQDD--LAGSPQELMSFIPSSQYLNICRRDHLLAVGDKQFKQGVVNFY 255 (261)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~i~-~P~l~i~G~~D~--~~~~~~~l~~~~p~~~~~~i~~~gH~~~~e~p~~~~~i~~Fl 255 (261)
T Consensus 383 ---------g~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp~l~-----~~~~~~v~lpGgHHF-d~dy~~la~~il~~~ 446 (456)
T COG3946 383 ---------GAGDVVPDIAKLPLARVQCIYGQEEKDTACPSLK-----AKGVDTVKLPGGHHF-DGDYEKLAKAILQGM 446 (456)
T ss_pred ---------CCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCH-----HHCCEEEECCCCCCC-CCCHHHHHHHHHHHH
T ss_conf ---------7777642555077440688745766556687641-----114346744787666-752899999999988