HHsearch alignment for GI: 254780166 and conserved domain: TIGR01839
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II; InterPro: IPR011287 This entry represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids . These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=95.93 E-value=0.048 Score=31.23 Aligned_cols=210 Identities=10% Similarity=0.152 Sum_probs=112.7
Q ss_pred CCCEEEEECC-------CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 9878999987-------8888001221799999998689899996476554222222222222122222222222222--
Q gi|254780166|r 25 DAPTILLIHG-------LASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHL-- 95 (261)
Q Consensus 25 ~~~~vv~iHG-------~~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~~~~s~~~~~~di~~~i~~l-- 95 (261)
T Consensus 214 ~ArPLLvVPPQINKfYiFDLSp-----~~S~~~Y~Lk~~~Q~F~iSWR-----NP~~~~REWGLStYv~AL~~A~~~~~~ 283 (560)
T TIGR01839 214 HARPLLVVPPQINKFYIFDLSP-----EKSFVQYALKNQLQVFIISWR-----NPDKAHREWGLSTYVDALEEAVDAVRA 283 (560)
T ss_pred CCCCEEECCCCCCCEEEEECCC-----HHHHHHHHHHCCCEEEEEEEC-----CCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 0552043388766347760374-----267999997528808999605-----987101325406799999999999875
Q ss_pred --CCCCCCCCCCCCCCCCHHHH----HHHCCC-CCCCEEE-ECCCCC--------CCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf --22222223443444310133----321023-5652389-628856--------3311035699999986311110000
Q gi|254780166|r 96 --GISKVHVMGYSMGARIACSM----VLFYPS-YVRSVIL-GGVGSV--------LYDSDVVDWQSLIDSFLLPSIDEVQ 159 (261)
Q Consensus 96 --~~~~~~liGhS~Gg~ia~~~----a~~~p~-~v~~lvl-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (261)
T Consensus 284 ItG~~d~Nl~GACaGGlT~aAL~GHl~~~~~~RkV~s~T~LVSlLDs~~~~~~~LF~DEQTlEaaKR-~SYQ~GVLdG~e 362 (560)
T TIGR01839 284 ITGSRDLNLLGACAGGLTVAALLGHLQAKRQLRKVNSLTYLVSLLDSKMESPAALFADEQTLEAAKR-RSYQAGVLDGSE 362 (560)
T ss_pred HCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH-HHHHCCCCCHHH
T ss_conf 1488760011015147899999989999753021456777777663145664011100345666532-344215645234
Q ss_pred --HHHH--HH----HCCC-CCCCCCCC----------------HHHHHHHH-HHH-----------CCCCCHHHHHCCCC
Q ss_conf --1110--00----0000-03476654----------------13567776-541-----------01220012100357
Q gi|254780166|r 160 --NPLG--KK----FRKF-ADLDPGND----------------LKALASCL-SMI-----------RKPFCQDDLYRIDV 202 (261)
Q Consensus 160 --~~~~--~~----~~~~-~~~~~~~~----------------~~~~~~~~-~~~-----------~~~~~~~~l~~i~~ 202 (261)
T Consensus 363 ~AkvFAWMRPNDLIWNYWVNNYLLG~~PP~FDILyWN~D~TRLPAA~HGdLld~FK~NPLTrP~aLEVcGTpiDL~~V~~ 442 (560)
T TIGR01839 363 MAKVFAWMRPNDLIWNYWVNNYLLGKEPPAFDILYWNNDTTRLPAAFHGDLLDLFKSNPLTRPDALEVCGTPIDLKKVKL 442 (560)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCEECCEEEE
T ss_conf 67665106866220243455453068768112553058886673665336999961378889876032365000130434
Q ss_pred CEEEEEECCCCCCC--CHHHHHHHCCCCEEEEECCCCCCC-CCCCH
Q ss_conf 60699847888788--079999967997999988887384-34848
Q gi|254780166|r 203 PVLIAVGSQDDLAG--SPQELMSFIPSSQYLNICRRDHLL-AVGDK 245 (261)
Q Consensus 203 P~l~i~G~~D~~~~--~~~~l~~~~p~~~~~~i~~~gH~~-~~e~p 245 (261)
T Consensus 443 D~f~vAG~~DHITPW~avYRSA~LlGG~~~FvLsNSGHIQSIlNPP 488 (560)
T TIGR01839 443 DSFSVAGTNDHITPWDAVYRSALLLGGKRRFVLSNSGHIQSILNPP 488 (560)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEECCCCC
T ss_conf 4565347778878427898888870895479873477222201811