HHsearch alignment for GI: 254780166 and conserved domain: TIGR03230
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.89 E-value=1.8e-09 Score=75.46 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=69.9
Q ss_pred CCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 899878999987888800-122179999999868-9899996476554222222222222122222222222222-----
Q gi|254780166|r 23 DKDAPTILLIHGLASSVQ-TNWLFSGWIQLLCDQ-GFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHL----- 95 (261)
Q Consensus 23 ~~~~~~vv~iHG~~~~~~-~~~~~~~~~~~l~~~-g~~vi~~D~~G~G~S~~~~~~~~~s~~~~~~di~~~i~~l----- 95 (261)
T Consensus 38 n~s~pT~~IIHG~~~~g~~~~Wv~~m~~all~~~~d~NVI~VDW~~-ga~~-~Y~~A~~ntr~VG~~iA~~i~~L~~~~g 115 (442)
T TIGR03230 38 NHETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLS-RAQQ-HYPTSAAYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECHH-HCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9889809998888888987568999999999627981899980704-2272-3599999899999999999999998519
Q ss_pred -CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCC
Q ss_conf -222222234434443101333210235652389628856331
Q gi|254780166|r 96 -GISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYD 137 (261)
Q Consensus 96 -~~~~~~liGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 137 (261)
T Consensus 116 ~~~~~vHlIGhSLGAHvAG~aG~~~~~~lgRITGLDPA~P~F~ 158 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGPTFE 158 (442)
T ss_pred CCHHHEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 9811348985224201222345640687560884168752136