HHsearch alignment for GI: 254780166 and conserved domain: TIGR03611
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=100.00 E-value=5.6e-45 Score=286.78 Aligned_cols=237 Identities=23% Similarity=0.340 Sum_probs=177.4
Q ss_pred EEEEEECCC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999996489--987899998788880012217999999986898999964765542222222222221222222222222
Q gi|254780166|r 16 FAFYDVGDK--DAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLE 93 (261)
Q Consensus 16 l~y~~~g~~--~~~~vv~iHG~~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~~~~s~~~~~~di~~~i~ 93 (261)
T Consensus 1 ~~y~~~g~~~~~~P~lvllHG~~~~~~---~w~~~~~~L~~~-~rvi~~Dl~G~G~S~~~~-~~~ys~~~~a~dl~~~l~ 75 (257)
T TIGR03611 1 MHYELHGPPDADAPTVVLSSGLGGSGS---YWAPQLDVLTQR-FHVVTYDHRGTGRSPEEL-PPGYSIAHMADDVLQLLD 75 (257)
T ss_pred CEEEEECCCCCCCCEEEEECCCCCCHH---HHHHHHHHHHCC-CEEEEECCCCCCCCCCCC-CCCCCHHHHHHHHHHHHH
T ss_conf 979995899999995999799866888---999999998269-869997899999999999-999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH----------HH
Q ss_conf 22222222234434443101333210235652389628856331103569999998631111000011----------10
Q gi|254780166|r 94 HLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQNP----------LG 163 (261)
Q Consensus 94 ~l~~~~~~liGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 163 (261)
T Consensus 76 ~l~~~~~~lvG~S~Gg~va~~~a~~~P~~V~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
T TIGR03611 76 ALGIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWIS 155 (257)
T ss_pred HCCCCCCEEEEECCCHHHHHHHHHHCHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHH
T ss_conf 76998726998477289999999969565408889888666883566678999999983277889987677516745442
Q ss_pred HHHCCCC-----CCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCC--HHHHHHHCCCCEEEEECCC
Q ss_conf 0000000-----34766541356777654101220012100357606998478887880--7999996799799998888
Q gi|254780166|r 164 KKFRKFA-----DLDPGNDLKALASCLSMIRKPFCQDDLYRIDVPVLIAVGSQDDLAGS--PQELMSFIPSSQYLNICRR 236 (261)
Q Consensus 164 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~--~~~l~~~~p~~~~~~i~~~ 236 (261)
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~ip~~~~~~i~~~ 235 (257)
T TIGR03611 156 ENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPNAQLKLLPYG 235 (257)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 30467768999998737768899999998862584888854899779996268876899999999987899889998999
Q ss_pred CCCCCCCCH-HHHHHHHHHHHH
Q ss_conf 738434848-999999999875
Q gi|254780166|r 237 DHLLAVGDK-QFKQGVVNFYAN 257 (261)
Q Consensus 237 gH~~~~e~p-~~~~~i~~Fl~~ 257 (261)
T Consensus 236 GH~~~~e~P~~~~~~l~~FLks 257 (257)
T TIGR03611 236 GHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred CCCHHHHCHHHHHHHHHHHHCC
T ss_conf 9710786999999999999675