HHsearch alignment for GI: 254780166 and conserved domain: pfam10142
>pfam10142 PhoPQ_related PhoPQ-activated pathogenicity-related protein. Members of this family of bacterial proteins are involved in the virulence of some pathogenic proteobacteria.
Probab=97.13 E-value=0.0028 Score=38.61 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=86.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 22222222344344431013332102356523896288563311035699999986311110000111000000003476
Q gi|254780166|r 95 LGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDP 174 (261)
Q Consensus 95 l~~~~~~liGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (261)
T Consensus 165 ~~i~~FvV~GaSKRGWttWltaa~-D~RV~ai~P~Vid~l---n~~~~~~h~~~~yG-----~ws~a~~dY~~--~gi~~ 233 (360)
T pfam10142 165 IKIKKFVVTGASKRGWTTWLTAAV-DPRVAAIAPMVIDIL---NMRAQLKHQYESYG-----NWSEALKDYVA--EGIDE 233 (360)
T ss_pred CCCHHEEEECCCCHHHHHHHHHHC-CCCEEEEEEEEECCC---CCHHHHHHHHHHHC-----CCCHHHHHHHH--CCCHH
T ss_conf 860116994545210898887641-756147976887044---60899999999756-----89667776777--18333
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCC--HHHHHHHCCCCE-EEEECCCCCCCCCCCHHHHHHH
Q ss_conf 6541356777654101220012100357606998478887880--799999679979-9998888738434848999999
Q gi|254780166|r 175 GNDLKALASCLSMIRKPFCQDDLYRIDVPVLIAVGSQDDLAGS--PQELMSFIPSSQ-YLNICRRDHLLAVGDKQFKQGV 251 (261)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~--~~~l~~~~p~~~-~~~i~~~gH~~~~e~p~~~~~i 251 (261)
T Consensus 234 ~l~t~~f~~L~~ivDP~~Y~---~rl~~PKyiinatgDeFf~pDs~~~y~~~L~G~K~lryvPN~~H~l~~--~~~~~~l 308 (360)
T pfam10142 234 QLNTPAFKQLLQIVDPYSYR---QRLTIPKYIINATGDEFFVPDSTNFYFDDLPGEKALRYVPNASHGLIN--TKVLESL 308 (360)
T ss_pred HHCCHHHHHHHHHCCHHHHH---HHCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCC--HHHHHHH
T ss_conf 30897899998860827568---627856189844789630468434556148986469976889877651--2389999
Q ss_pred HHHHHHHC
Q ss_conf 99987516
Q gi|254780166|r 252 VNFYANEL 259 (261)
Q Consensus 252 ~~Fl~~~~ 259 (261)
T Consensus 309 ~sf~~~~~ 316 (360)
T pfam10142 309 VPFFKRVQ 316 (360)
T ss_pred HHHHHHHH
T ss_conf 99999997