RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus
Liberibacter asiaticus str. psy62]
         (261 letters)



>gnl|CDD|30941 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
           hydrolase superfamily) [General function prediction
           only].
          Length = 282

 Score = 85.5 bits (209), Expect = 1e-17
 Identities = 54/228 (23%), Positives = 80/228 (35%), Gaps = 35/228 (15%)

Query: 18  FYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIEN 77
            Y       P ++L+HG   S  + W     +       +RVIA D  GHG+SD      
Sbjct: 13  AYREAGGGGPPLVLLHGFPGS-SSVWRPVFKVLPALAARYRVIAPDLRGHGRSDP----A 67

Query: 78  DYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYD 137
            Y L   A D  +LL+ LG+ KV ++G+SMG  +A ++ L +P  VR ++L G       
Sbjct: 68  GYSLSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGL 127

Query: 138 SDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADL------------------------- 172
            +    Q    + L    D +       F                               
Sbjct: 128 LEAALRQPAGAAPLAALADLLLGLDAAAFAALLAALGLLAALAAAARAGLAEALRAPLLG 187

Query: 173 -----DPGNDLKALASCLSMIRKPFCQDDLYRIDVPVLIAVGSQDDLA 215
                        LA+ L  +     +  L RI VP LI  G  D + 
Sbjct: 188 AAAAAFARAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVV 235


>gnl|CDD|39380 KOG4178, KOG4178, KOG4178, Soluble epoxide hydrolase [Lipid
           transport and metabolism].
          Length = 322

 Score = 84.6 bits (209), Expect = 2e-17
 Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 22  GDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRL 81
           G  D P +LL+HG   S  + W     I  L  +G+RVIA D  G+G SD     ++Y +
Sbjct: 40  GPGDGPIVLLLHGFPESWYS-WRHQ--IPGLASRGYRVIAPDLRGYGFSDAPPHISEYTI 96

Query: 82  VFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128
             +  D V+LL+HLG+ K  ++G+  GA +A  + LFYP  V  ++ 
Sbjct: 97  DELVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVT 143


>gnl|CDD|144228 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.  This
           catalytic domain is found in a very wide range of
           enzymes.
          Length = 225

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 33/204 (16%)

Query: 57  FRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMV 116
           F VIAFD  G G+S    +  DYR   +A D  +LL+ LG+ KV+++G+SMG  IA +  
Sbjct: 1   FDVIAFDLRGFGRSSPPDLA-DYRFDDLAEDLEALLQALGLDKVNLVGHSMGGLIALAYA 59

Query: 117 LFYPSYVRSVIL-GGVGSVLYDSDVVDWQSLIDSF-------LLPSIDEVQN-------- 160
             YP  V++++L G V      S +    +L+          L  S++ +          
Sbjct: 60  AKYPDRVKALVLVGTVHPAGLSSPLTPRGNLLGLLLDNFFNRLYDSVEALLGRAIKQFQA 119

Query: 161 ---PLGKKFRK-FADLDPGNDLKALASCLSMIRKPFCQD-------DLYRIDVPVLIAVG 209
              P    F K F         + LA    ++               L  IDVP LI  G
Sbjct: 120 LGRPFVSDFLKQFELSSLIRFSETLALDG-LLGVALGYYLVWDRSAALKDIDVPTLIIWG 178

Query: 210 SQD---DLAGSPQELMSFIPSSQY 230
             D       S + L +  P++Q 
Sbjct: 179 DDDPLVPPDASEK-LAALFPNAQL 201


>gnl|CDD|36667 KOG1454, KOG1454, KOG1454, Predicted hydrolase/acyltransferase
           (alpha/beta hydrolase superfamily) [General function
           prediction only].
          Length = 326

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 61/270 (22%), Positives = 94/270 (34%), Gaps = 47/270 (17%)

Query: 10  SWRKYQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQ-GFRVIAFDNLGHG 68
            W      +   GDKD P +LL+HG  +S    + +   + LL    G RV+A D  GHG
Sbjct: 42  KWIPNLDKYGSPGDKDKPPVLLLHGFGASS---FSWRRVVPLLSKAKGLRVLAIDLPGHG 98

Query: 69  KSDKSYIENDYRLVFMAADAVSLLEHLGI----SKVHVMGYSMGARIACSMVLFYPSYVR 124
            S           ++   + V L+           V ++G+S+G  +A     +YP  V 
Sbjct: 99  YSS----PLPRGPLYTLRELVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPETVD 154

Query: 125 SVI-LGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKF------------RKFAD 171
           S++ L  +G  +Y +               S  E+  PL                 K   
Sbjct: 155 SLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLKVVY 214

Query: 172 LDPGNDLKALASCLSMIRKPFCQDDLYR--------------------IDVPVLIAVGSQ 211
            DP   L+ L   LS   K     D                          PVLI  G +
Sbjct: 215 TDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDK 274

Query: 212 DDLAGSP--QELMSFIPSSQYLNICRRDHL 239
           D +      +EL   +P+++ + I    HL
Sbjct: 275 DQIVPLELAEELKKKLPNAELVEIPGAGHL 304


>gnl|CDD|32448 COG2267, PldB, Lysophospholipase [Lipid metabolism].
          Length = 298

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 44/228 (19%), Positives = 70/228 (30%), Gaps = 44/228 (19%)

Query: 18  FYDVGDKDAP---TILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSY 74
            Y       P    ++L+HGL                L  +GF V A D  GHG+S +  
Sbjct: 23  RYRTWAAPEPPKGVVVLVHGLGEHSGRYEEL---ADDLAARGFDVYALDLRGHGRSPRGQ 79

Query: 75  IENDYRLVFMAADAVSLLEHLGI----SKVHVMGYSMGARIACSMVLFYPSYVRSVILGG 130
             +         D  + +E +        V ++G+SMG  IA   +  YP  +  ++L  
Sbjct: 80  RGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVL-- 137

Query: 131 VGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKAL--------- 181
             S          + ++    L     +   +  K    ++L  G     L         
Sbjct: 138 -SSPALGLGGAILRLILARLALK----LLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAA 192

Query: 182 -----------------ASCLSMIRKPFCQDDLYRIDVPVLIAVGSQD 212
                               L   R P    D   I +PVL+  G  D
Sbjct: 193 YEADPLIGVGGPVSRWVDLALLAGRVP-ALRDAPAIALPVLLLQGGDD 239


>gnl|CDD|39610 KOG4409, KOG4409, KOG4409, Predicted hydrolase/acyltransferase
           (alpha/beta hydrolase superfamily) [General function
           prediction only].
          Length = 365

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 24  KDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYR--L 81
            +   ++LIHG  + +    LF      L  +   V A D LG G+S +     D     
Sbjct: 88  ANKTPLVLIHGYGAGLG---LFFRNFDDLA-KIRNVYAIDLLGFGRSSRPKFSIDPTTAE 143

Query: 82  VFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128
                      + +G+ K+ ++G+S G  +A    L YP  V  +IL
Sbjct: 144 KEFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPERVEKLIL 190


>gnl|CDD|38195 KOG2984, KOG2984, KOG2984, Predicted hydrolase [General function
           prediction only].
          Length = 277

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 43/218 (19%)

Query: 29  ILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFM---A 85
           ILLI G   S +T++     + L       ++A+D  G+G S     E  + + F    A
Sbjct: 45  ILLIPGALGSYKTDFPPQ-LLSLFKPLQVTIVAWDPPGYGTSRPP--ERKFEVQFFMKDA 101

Query: 86  ADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQS 145
             AV L+E L +    V+G+S G   A  +       V  +I+ G  + +     + ++ 
Sbjct: 102 EYAVDLMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKG 161

Query: 146 LID-SFLLPSIDEVQNPLGKKF----------------RKFADLDPGNDLKALASCLSMI 188
           + D +       +   P    +                 +F     G             
Sbjct: 162 IRDVNKWSARGRQ---PYEDHYGPETFRTQWAAWVDVVDQFHSFCDGR------------ 206

Query: 189 RKPFCQDDLYRIDVPVLIAVGSQDDLAGSPQELMSFIP 226
              FC+  L ++  P LI  G +D   G P   + FIP
Sbjct: 207 ---FCRLVLPQVKCPTLIMHGGKDPFCGDPH--VCFIP 239


>gnl|CDD|32204 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
           and metabolism].
          Length = 368

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 34/123 (27%), Positives = 42/123 (34%), Gaps = 24/123 (19%)

Query: 29  ILLIHGLASSVQTNWLFS----GWIQLLCDQG-------FRVIAFDNLGHGK-----SDK 72
           +L+ H L               GW   L   G       F VI  + LG  K     S  
Sbjct: 54  VLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSI 113

Query: 73  SYIENDYRLVF-------MAADAVSLLEHLGISKVH-VMGYSMGARIACSMVLFYPSYVR 124
           +     Y   F       M      LL+ LGI K+  V+G SMG   A    + YP  VR
Sbjct: 114 NPGGKPYGSDFPVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVR 173

Query: 125 SVI 127
             I
Sbjct: 174 RAI 176


>gnl|CDD|31695 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
           [Amino acid transport and metabolism].
          Length = 620

 Score = 49.4 bits (117), Expect = 9e-07
 Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 34/198 (17%)

Query: 24  KDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFD---NLGHGKS-----DKSYI 75
           K  P I+ IHG   S Q  + F+  IQ+L   G+ V+A +   + G+G+         + 
Sbjct: 392 KKYPLIVYIHG-GPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWG 450

Query: 76  ENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVL 135
             D   +  A DA+  L  +   ++ + G S G  +        P +  +V +       
Sbjct: 451 GVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAV------- 503

Query: 136 YDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKALASCLSMIRKPFCQD 195
             +  VDW                  L     +     P +  K         R P    
Sbjct: 504 --AGGVDWLLYFGES--------TEGLRFDPEENGGGPPEDREKYED------RSPIFYA 547

Query: 196 DLYRIDVPVLIAVGSQDD 213
           D   I  P+L+  G +DD
Sbjct: 548 D--NIKTPLLLIHGEEDD 563


>gnl|CDD|36668 KOG1455, KOG1455, KOG1455, Lysophospholipase [Lipid transport and
           metabolism].
          Length = 313

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 31/226 (13%)

Query: 28  TILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKS--YIENDYRLVFMA 85
            + L HG      ++W +    + L   GF V A D  GHG+SD    Y+ +   +V   
Sbjct: 56  LVFLCHGYGE--HSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHAYVPSFDLVV--- 110

Query: 86  ADAVSLLEHLGISK------VHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSD 139
            D +S  + +   +        + G SMG  +A  + L  P++    IL      + +  
Sbjct: 111 DDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDT 170

Query: 140 VVDW---------QSLIDSFLLPSIDEVQNPLGK--KFRKFADLDP--GNDLKALASCLS 186
                          LI ++ +    ++ +   K  + RK    DP        L +   
Sbjct: 171 KPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYE 230

Query: 187 MIRK-PFCQDDLYRIDVPVLIAVGSQD---DLAGSPQELMSFIPSS 228
           ++R     + +L  + VP LI  G+ D   D   S +EL     SS
Sbjct: 231 LLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKVS-KELYEKASSS 275


>gnl|CDD|37593 KOG2382, KOG2382, KOG2382, Predicted alpha/beta hydrolase [General
           function prediction only].
          Length = 315

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 10/110 (9%)

Query: 24  KDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVF 83
           + AP  +++HGL  S + NW       L    G  V A D   HG S K  + N      
Sbjct: 50  ERAPPAIILHGLLGSKE-NWRSVA-KNLSRKLGRDVYAVDVRNHGSSPKITVHNYEA--- 104

Query: 84  MAADAVSLLEHLGIS----KVHVMGYSMG-ARIACSMVLFYPSYVRSVIL 128
           MA D    ++ +G S     V ++G+SMG  ++A +  L  P  +  +I+
Sbjct: 105 MAEDVKLFIDGVGGSTRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIV 154


>gnl|CDD|37775 KOG2564, KOG2564, KOG2564, Predicted acetyltransferases and
           hydrolases with the alpha/beta hydrolase fold [General
           function prediction only].
          Length = 343

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 24  KDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVF 83
            + P +LL+HG  SS  +  +F+  ++       R +A D  GHG++ K   E+D  L  
Sbjct: 72  TEGPILLLLHGGGSSALSFAIFASELKSKIRC--RCLALDLRGHGET-KVENEDDLSLET 128

Query: 84  MAADAVSLLEHL---GISKVHVMGYSMGARIA 112
           M+ D  ++++ L      ++ ++G+SMG  IA
Sbjct: 129 MSKDFGAVIKELFGELPPQIILVGHSMGGAIA 160


>gnl|CDD|30778 COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase
           fold [General function prediction only].
          Length = 345

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 22/121 (18%)

Query: 5   VKFFRSWRKYQFAFYDVGDKD---------APTILLIHGLASSVQTNWLFSGWIQLLCDQ 55
            K   +  + +       D D          P ++L HGL  S  + +   G ++ L  +
Sbjct: 45  PKVAYTRERLETPDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSSNSPYA-RGLMRALSRR 103

Query: 56  GFRVIAFDNLGHGKSDKSYIENDYRLVFMA---ADAVSLLEHL----GISKVHVMGYSMG 108
           G+ V+ F   G          N    ++ +    D    L+ L        ++ +G+S+G
Sbjct: 104 GWLVVVFHFRGCSGE-----ANTSPRLYHSGETEDIRFFLDWLKARFPPRPLYAVGFSLG 158

Query: 109 A 109
            
Sbjct: 159 G 159


>gnl|CDD|29805 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
           Lipases are esterases that can hydrolyze long-chain
           acyl-triglycerides into di- and monoglycerides,
           glycerol, and free fatty acids at a water/lipid
           interface.  A typical feature of lipases is "interfacial
           activation," the process of becoming active at the
           lipid/water interface, although several examples of
           lipases have been identified that do not undergo
           interfacial activation .  The active site of a lipase
           contains a catalytic triad consisting of Ser - His -
           Asp/Glu, but unlike most serine proteases, the active
           site is buried inside the structure.  A "lid" or "flap"
           covers the active site, making it inaccessible to
           solvent and substrates. The lid opens during the process
           of interfacial activation, allowing the lipid substrate
           access to the active site..
          Length = 275

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 23  DKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLV 82
           +   PT  +IHG  SS + +W+       L    + VI  D      ++ +Y +      
Sbjct: 33  NPSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGR--GANPNYPQAVNNTR 90

Query: 83  FMAADAVSLLEHL------GISKVHVMGYSMGARIA 112
            + A+    L+ L       +  VH++G+S+GA +A
Sbjct: 91  VVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVA 126


>gnl|CDD|31833 COG1647, COG1647, Esterase/lipase [General function prediction
           only].
          Length = 243

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 21/192 (10%)

Query: 29  ILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFM-AAD 87
           +LL+HG   + +   +   ++    + G+ V A    GHG   + +++   R  +    D
Sbjct: 18  VLLLHGFTGTPRDVRMLGRYLN---ENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVED 74

Query: 88  AVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQSLI 147
               L+  G  ++ V+G SMG   A  +   YP          +  +    +V  W+ +I
Sbjct: 75  GYRDLKEAGYDEIAVVGLSMGGVFALKLAYHYP-------PKKIVPMCAPVNVKSWRIII 127

Query: 148 DSFL-----LPSIDEVQNPLGKKFRKFADLDPGNDLKALASCLSMIRKPFCQDDLYRIDV 202
           +  L         +        K  K     P      L   +   R       L +I  
Sbjct: 128 EGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPMTTTAQLKKLIKDAR-----RSLDKIYS 182

Query: 203 PVLIAVGSQDDL 214
           P L+  G QD++
Sbjct: 183 PTLVVQGRQDEM 194


>gnl|CDD|30749 COG0400, COG0400, Predicted esterase [General function prediction
           only].
          Length = 207

 Score = 37.2 bits (86), Expect = 0.005
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 14  YQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWI-QLLCDQGFRVI----AFDNLGHG 68
           +       GD  AP ++L+HGL                +L +          A +     
Sbjct: 6   FIPRIEKPGDPAAPLLILLHGLGGD---ELDLVPLPELILPNATLVSPRGPVAENGGPRF 62

Query: 69  KSDKSYIENDYRLVFMAADAV-----SLLEHLGI--SKVHVMGYSMGARIACSMVLFYPS 121
                    D   + +  + +      L E  GI  S++ ++G+S GA IA S+ L  P 
Sbjct: 63  FRRYDEGSFDQEDLDLETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPG 122

Query: 122 YVRSVIL 128
                IL
Sbjct: 123 LFAGAIL 129


>gnl|CDD|143919 pfam00151, Lipase, Lipase. 
          Length = 329

 Score = 35.9 bits (83), Expect = 0.011
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 25  DAPTILLIHG-LASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSD-KSYIENDYRLV 82
              T  +IHG      + +WL      L   +G  VI  D  G G +        + R+V
Sbjct: 70  SKKTRAIIHGFTDKGQEESWLSDMCKNLFQVEGVNVIVVD-WGSGSTTFYRQATLNVRVV 128

Query: 83  --FMAADAVSLLEHLGIS--KVHVMGYSMGARIA 112
              +A   V L E L +S   VH++G+S+GA +A
Sbjct: 129 GAEVAKLLVELEEELNVSPENVHLIGHSLGAHVA 162


>gnl|CDD|37049 KOG1838, KOG1838, KOG1838, Alpha/beta hydrolase [General function
           prediction only].
          Length = 409

 Score = 35.6 bits (82), Expect = 0.013
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 13/100 (13%)

Query: 22  GDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRL 81
            D   P ++++ GL      +++    +     +G+RV+ F++ G G       +     
Sbjct: 121 DDGTDPIVVILPGLTGGSHESYV-RHLVHEAQRKGYRVVVFNHRGLG-----GSKLTTPR 174

Query: 82  VFMAADAVSL---LEHLG----ISKVHVMGYSMGARIACS 114
           +F A     L   + H+      + +  +G+SMG  I  +
Sbjct: 175 LFTAGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTN 214


>gnl|CDD|37223 KOG2012, KOG2012, KOG2012, Ubiquitin activating enzyme UBA1
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 1013

 Score = 35.7 bits (82), Expect = 0.014
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 20/110 (18%)

Query: 98  SKVHVMGY-SMGARIACSMVLFYPSYVRSVILGGVGSV-LYDSDVVDWQSLIDSFLLPSI 155
           S V + G   +G  IA           +++IL GV SV L+D   V    L   F L   
Sbjct: 38  SNVLISGLQGLGVEIA-----------KNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEE 86

Query: 156 DEVQNPLGKKFRKFADLDPGNDLKALASCLSMIRKPFCQDDLYRIDVPVL 205
           D  +N       K A+L+    +  L         P  ++ L    V VL
Sbjct: 87  DIGKNRAEASVEKLAELNNYVPVVVLTG-------PLTEEFLSDFQVVVL 129


>gnl|CDD|37492 KOG2281, KOG2281, KOG2281, Dipeptidyl
           aminopeptidases/acylaminoacyl-peptidases
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 867

 Score = 35.0 bits (80), Expect = 0.024
 Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 19/132 (14%)

Query: 24  KDAPTILLIHGLASSVQT-NWLFSGWIQL----LCDQGFRVIAFDNLG---HGKSDKSYI 75
           K  PT+L ++G    VQ  N  F G   L    L   G+ V+  DN G    G   +S+I
Sbjct: 640 KKYPTVLNVYG-GPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHI 698

Query: 76  ENDYRLVFMAADAV----SLLEHLG---ISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128
           +     V    D V     L E  G   + +V V G+S G  ++   +  YP+  R  I 
Sbjct: 699 KKKMGQV-EVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIA 757

Query: 129 GGVGSV--LYDS 138
           G   +   LYD+
Sbjct: 758 GAPVTDWRLYDT 769


>gnl|CDD|33312 COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 312

 Score = 33.8 bits (77), Expect = 0.051
 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 23  DKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDK----SYIEND 78
              AP ++++HG   S       +GW  L   +GF V   D      +       +   D
Sbjct: 58  PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWFGPAD 117

Query: 79  YRL-----VFMAADAVSLLEHLGI--SKVHVMGYSMGARIACSMVLFYPSYVRSVILGGV 131
            R       F+ A    L+   GI  ++V+V G S G R+A  +   YP      I   +
Sbjct: 118 RRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPD-----IFAAI 172

Query: 132 GSV 134
             V
Sbjct: 173 APV 175


>gnl|CDD|38142 KOG2931, KOG2931, KOG2931, Differentiation-related gene 1 protein
           (NDR1 protein), related proteins [Function unknown].
          Length = 326

 Score = 33.3 bits (76), Expect = 0.068
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 10/109 (9%)

Query: 27  PTILLIHGLASSVQTNWLFSGWIQLLCDQG----FRVIAFDNLGHGKSDKSYIENDYRLV 82
           P I+  H L  + ++   F G+            F V   D  G  +         Y   
Sbjct: 47  PAIITYHDLGLNHKSC--FQGFFNFPDMAEILEHFCVYHVDAPGQ-EDGAPSFPEGYPYP 103

Query: 83  FM---AADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128
            M   A     +L+H G+  V  MG   GA I     L +P  V  ++L
Sbjct: 104 SMDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPERVLGLVL 152


>gnl|CDD|145034 pfam01674, Lipase_2, Lipase (class 2).  This family consists of
           hypothetical C. elegans proteins and lipases. Lipases or
           triacylglycerol acylhydrolases hydrolyse ester bonds in
           triacylglycerol giving diacylglycerol, monoacylglycerol,
           glycerol and free fatty acids. One member, a
           triacylglycerol lipase, is a extracellular lipase from
           B. subtilis 168.
          Length = 218

 Score = 33.1 bits (76), Expect = 0.072
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 29/114 (25%)

Query: 29  ILLIHGLASSVQTNWLFSGWIQLLCDQGF---RVIAFDNLGHGKSDKSYIENDYRLVFMA 85
           ++ +HG +      W  S   Q   ++G+    + A    G G    S      +   M 
Sbjct: 4   VIFVHGNSGLAAGGW--SKLRQYFKERGYTLAELYAT-TWGDGNLLTSL-----QRAEMK 55

Query: 86  ADAVSLLEHLGIS-------KVHVMGYSMGARIACSMVLFYPSYVRSVILGGVG 132
            + V  +     +       KV ++ +SMG  IA           R  ILGG  
Sbjct: 56  CEYVKQIRRFIEAVLGYTGAKVDIVAHSMGVPIA-----------RKAILGGNC 98


>gnl|CDD|30761 COG0412, COG0412, Dienelactone hydrolase and related enzymes
           [Secondary metabolites biosynthesis, transport, and
           catabolism].
          Length = 236

 Score = 32.7 bits (74), Expect = 0.11
 Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 37/134 (27%)

Query: 18  FYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCD----QGFRVIAFDNLGH--GKSD 71
               G    P ++++H         +  +  I+ +       G+ V+A D  G     +D
Sbjct: 19  ARPAGAGGFPGVIVLHE-------IFGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTD 71

Query: 72  KSYIENDYR--------------LVFMAADAVSLLEHLGISKVHVMGYSMGARIACSM-- 115
                 +                 +  A D ++    +   ++ V+G+ MG  +A     
Sbjct: 72  IEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAAT 131

Query: 116 --------VLFYPS 121
                   V FY  
Sbjct: 132 RAPEVKAAVAFYGG 145


>gnl|CDD|73270 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1.
           E1, a highly conserved small protein present universally
           in eukaryotic cells, is part of cascade to attach
           ubiquitin (Ub) covalently to substrate proteins. This
           cascade consists of activating (E1), conjugating (E2),
           and/or ligating (E3) enzymes and then targets them for
           degradation by the 26S proteasome. E1 activates
           ubiquitin by C-terminal adenylation, and subsequently
           forms a highly reactive thioester bond between its
           catalytic cysteine and ubiquitin's C-terminus. E1 also
           associates with E2 and promotes ubiquitin transfer to
           the E2's catalytic cysteine. Ubiquitin-E1 is a
           single-chain protein with a weakly conserved two-fold
           repeat. This CD represents the first repeat of Ub-E1..
          Length = 286

 Score = 31.7 bits (72), Expect = 0.21
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 124 RSVILGGVGSV-LYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDP 174
           +++IL GV SV L+D+    W  L   F L   D  +N       + A+L+P
Sbjct: 36  KNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP 87


>gnl|CDD|73271 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1.
           Aos1 is part of the heterodimeric activating enzyme
           (E1), specific for the SUMO family of ubiquitin-like
           proteins (Ubls). E1 enzymes are part of a conjugation
           cascade to attach Ub or Ubls, covalently to substrate
           proteins consisting of activating (E1), conjugating
           (E2), and/or ligating (E3) enzymes. E1 activates
           ubiquitin by C-terminal adenylation, and subsequently
           forms a highly reactive thioester bond between its
           catalytic cysteine and Ubls C-terminus. The E1 also
           associates with E2 and promotes ubiquitin transfer to
           the E2's catalytic cysteine. Post-translational
           modification by SUMO family of ubiquitin-like proteins
           (Ublps) is involved in cell division, nuclear transport,
           the stress response and signal transduction. Aos1
           contains part of the adenylation domain..
          Length = 197

 Score = 30.9 bits (70), Expect = 0.31
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 123 VRSVILGGVGSV-LYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKAL 181
            ++++L G+GS+ + D   V  + L   FL+P+ D  QN       +   L+P   +   
Sbjct: 37  AKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD 96

Query: 182 ASCLSMIRKPF 192
              +S   + F
Sbjct: 97  TDDISEKPEEF 107


>gnl|CDD|111194 pfam02273, Acyl_transf_2, Acyl transferase.  This bacterial family
           of Acyl transferases (or myristoyl-acp-specific
           thioesterases) catalyse the first step in the
           bioluminescent fatty acid reductase system.
          Length = 294

 Score = 30.6 bits (69), Expect = 0.42
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 15/97 (15%)

Query: 23  DKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGH-GKSDKSYIENDYRL 81
            K   TI++  G A  +     F+G  + L   GF VI +D+L H G S     E     
Sbjct: 27  PKRNNTIVIASGFARRMDH---FAGLAEYLSTNGFHVIRYDSLHHVGLSSGEIDE----- 78

Query: 82  VFMAADAVSL------LEHLGISKVHVMGYSMGARIA 112
             M+    SL      L+  GI+ + ++  S+ ARIA
Sbjct: 79  FTMSVGKNSLLTVIDWLKTRGINNIGLIASSLSARIA 115


>gnl|CDD|33856 COG4099, COG4099, Predicted peptidase [General function prediction
           only].
          Length = 387

 Score = 29.2 bits (65), Expect = 1.3
 Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 12/133 (9%)

Query: 3   NEVKFFRSWRKYQFAFYDVGDKDAPTILLIHG--LASSVQTNWLFSGWIQLLCDQ---GF 57
           NE+K+    R Y    Y    K  P +L +HG     S     L SG   +         
Sbjct: 172 NELKY----RLYTPKDYAPDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQC 227

Query: 58  RVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGI--SKVHVMGYSMGARIACSM 115
            V+A          +                V L     I  S+++V+G S G     ++
Sbjct: 228 FVLAPQYNPIFADSEEKTLLYLIEKIDLILEV-LASTYNIDRSRIYVIGLSRGGFGTWAL 286

Query: 116 VLFYPSYVRSVIL 128
              +P +  + + 
Sbjct: 287 AEKFPDFFAAAVP 299


>gnl|CDD|34393 COG4782, COG4782, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 377

 Score = 28.0 bits (62), Expect = 2.5
 Identities = 4/26 (15%), Positives = 13/26 (50%)

Query: 91  LLEHLGISKVHVMGYSMGARIACSMV 116
           L     + +++++ +SMG  +    +
Sbjct: 184 LATDKPVKRIYLLAHSMGTWLLMEAL 209


>gnl|CDD|33055 COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid
           metabolism].
          Length = 445

 Score = 28.0 bits (62), Expect = 2.6
 Identities = 12/76 (15%), Positives = 30/76 (39%)

Query: 46  SGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGY 105
              ++ L +QG  V          S  +    DY L  ++    ++ +  G   ++++GY
Sbjct: 129 KSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYILEGLSEAIDTVKDITGQKDINLIGY 188

Query: 106 SMGARIACSMVLFYPS 121
            +G  +  + +    +
Sbjct: 189 CVGGTLLAAALALMAA 204


>gnl|CDD|38937 KOG3733, KOG3733, KOG3733, Mucolipidin and related proteins (TRML
           subfamily of transient receptor potential proteins)
           [Inorganic ion transport and metabolism].
          Length = 566

 Score = 27.3 bits (60), Expect = 5.0
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 168 KFADLDPGNDLKALASCLSMIRKP--FCQDDLYRIDVPVLIAVGSQDDLAGSPQELMSFI 225
            +A   PG  +  LA C    R+   F  +D + ID P +  V  +       +  +   
Sbjct: 145 PYAYPTPGTTMSPLALCQQNYRRGTIFPFNDTFDID-PHIDTVCERVP---PNETTIGVE 200

Query: 226 PSSQYLNICRRDHLLAVGDKQFKQGVVNFYAN 257
              +  N+    H L      FK   +N  AN
Sbjct: 201 NYLRQRNLTLNFHSLVSVQLTFKLKTINLQAN 232


>gnl|CDD|145081 pfam01738, DLH, Dienelactone hydrolase family. 
          Length = 216

 Score = 26.9 bits (60), Expect = 5.2
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 15/76 (19%)

Query: 52  LCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMA---------ADAVSLLEHL------G 96
           L ++G+  +  D       D +      R +             D ++ + +L       
Sbjct: 37  LAEEGYVALCPDLYARQGPDPTDPREAARAMRGLLSKRMEAVVDDLLAAINYLRGQPYVD 96

Query: 97  ISKVHVMGYSMGARIA 112
             KV V+G+ +G R+A
Sbjct: 97  TKKVGVVGFCLGGRLA 112


>gnl|CDD|107300 cd06305, PBP1_methylthioribose_binding_like,
          Methylthioribose-binding protein-like of ABC-type
          transport systems that belong to a family of
          pentose/hexose sugar-binding proteins of the type I
          periplasmic binding protein (PBP1) superfamily.
          Methylthioribose-binding protein-like of ABC-type
          transport systems that belong to a family of
          pentose/hexose sugar-binding proteins of the type I
          periplasmic binding protein (PBP1) superfamily, which
          consists of two alpha/beta globular domains connected
          by a three-stranded hinge. This Venus flytrap-like
          domain undergoes transition from an open to a closed
          conformational state upon ligand binding. The
          sugar-binding domain of the periplasmic proteins in
          this group is also homologous to the ligand-binding
          domain of eukaryotic receptors such as metabotropic
          glutamate receptor (mGluR), DNA-binding transcriptional
          repressors such as LacI and GalR.
          Length = 273

 Score = 26.9 bits (60), Expect = 5.8
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%)

Query: 29 ILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDN 64
          I++ HG A  ++       W++   D G  V+AFD 
Sbjct: 59 IIIQHGRAEVLK------PWVKRALDAGIPVVAFDV 88


>gnl|CDD|146268 pfam03537, DUF297, TM1410 hypothetical-related protein. 
          Length = 203

 Score = 26.9 bits (60), Expect = 5.9
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 42  NWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYI-ENDYRLVFMAADAVSLLEHL 95
           +++    + LL  +GF  +  DN+       SY   N       AAD V+L+  L
Sbjct: 89  DFIMDARLDLLWAKGFDGVFLDNVD------SYQNANGTGRPLTAADLVALIREL 137


>gnl|CDD|111936 pfam03096, Ndr, Ndr family.  This family consists of proteins from
           different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3.
           Their similarity was previously noted. The precise
           molecular and cellular function of members of this
           family is still unknown. Yet, they are known to be
           involved in cellular differentiation events. The Ndr1
           group was the first to be discovered. Their expression
           is repressed by the proto-oncogenes N-myc and c-myc, and
           in line with this observation, Ndr1 protein expression
           is down-regulated in neoplastic cells, and is
           reactivated when differentiation is induced by chemicals
           such as retinoic acid. Ndr2 and Ndr3 expression is not
           under the control of N-myc or c-myc. Ndr1 expression is
           also activated by several chemicals: tunicamycin and
           homocysteine induce Ndr1 in human umbilical endothelial
           cells; nickel induces Ndr1 in several cell types.
           Members of this family are found in wide variety of
           multicellular eukaryotes, including an Ndr1 type protein
           in Helianthus annuus (sunflower), known as Sf21.
           Interestingly, the highest scoring matches in the noise
           are all alpha/beta hydrolases pfam00561, suggesting that
           this family may have an enzymatic function (Bateman A
           pers. obs.).
          Length = 285

 Score = 26.5 bits (59), Expect = 7.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 84  MAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128
           +A     +L+H  +  V  MG   GA I     L +P  V  ++L
Sbjct: 85  LADMLPVVLDHFRLKSVIGMGVGAGAYILARFALKHPERVEGLVL 129


>gnl|CDD|33323 COG3520, COG3520, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 335

 Score = 26.4 bits (58), Expect = 8.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   FFRSWRKYQFAF-YDVGDKDA--PTILLIHGLASSVQTNWLFSGWIQLLC 53
           F+R+WRKY++A  +D G  DA    +L + GL      + L       L 
Sbjct: 128 FYRAWRKYRYAVGFDRGADDAFSAQLLALSGLGPPGLRDKLADNHSARLA 177


>gnl|CDD|37835 KOG2624, KOG2624, KOG2624, Triglyceride lipase-cholesterol esterase
           [Lipid transport and metabolism].
          Length = 403

 Score = 26.1 bits (57), Expect = 8.8
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 18/117 (15%)

Query: 27  PTILLIHGLASSVQTNWLFSGWIQ----LLCDQGFRVIAFDNLGHGKSDKSYIEN----- 77
           P +LL HGL +S  ++W+ +G  Q    LL D G+ V   +N G+  S K    +     
Sbjct: 74  PVVLLQHGLLASS-SSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSPSSDK 132

Query: 78  ---DYRLVFMAA-DAVSLLEHL----GISKVHVMGYSMGARIACSMVLFYPSYVRSV 126
              D+    M   D  ++++++    G  K+H +G+S G      M+   P Y + +
Sbjct: 133 EFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKI 189


>gnl|CDD|35102 COG5543, COG5543, Uncharacterized conserved protein [Function
            unknown].
          Length = 1400

 Score = 26.2 bits (57), Expect = 9.0
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 83   FMAADAVSLLEHLGISK--VHVMGYSMGARIA--CSMVLFYPS--YVRSVILGGVGSVLY 136
                 A+SL+      +  ++V+  S    +A    M+L Y    Y+  + L G+ S  Y
Sbjct: 1037 SDLKHAISLMRMYRGQENNIYVVDGSKQLYLAQILDMLLKYEDSIYLDDICLLGLYSPFY 1096

Query: 137  DSDVVDWQSLIDSF 150
            ++ +   Q +  +F
Sbjct: 1097 EAQLSTLQYMNTNF 1110


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0735    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,322,694
Number of extensions: 175873
Number of successful extensions: 550
Number of sequences better than 10.0: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 51
Length of query: 261
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,275,709
Effective search space: 722594821
Effective search space used: 722594821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)