RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus Liberibacter asiaticus str. psy62] (261 letters) >gnl|CDD|30941 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]. Length = 282 Score = 85.5 bits (209), Expect = 1e-17 Identities = 54/228 (23%), Positives = 80/228 (35%), Gaps = 35/228 (15%) Query: 18 FYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIEN 77 Y P ++L+HG S + W + +RVIA D GHG+SD Sbjct: 13 AYREAGGGGPPLVLLHGFPGS-SSVWRPVFKVLPALAARYRVIAPDLRGHGRSDP----A 67 Query: 78 DYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYD 137 Y L A D +LL+ LG+ KV ++G+SMG +A ++ L +P VR ++L G Sbjct: 68 GYSLSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGL 127 Query: 138 SDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADL------------------------- 172 + Q + L D + F Sbjct: 128 LEAALRQPAGAAPLAALADLLLGLDAAAFAALLAALGLLAALAAAARAGLAEALRAPLLG 187 Query: 173 -----DPGNDLKALASCLSMIRKPFCQDDLYRIDVPVLIAVGSQDDLA 215 LA+ L + + L RI VP LI G D + Sbjct: 188 AAAAAFARAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVV 235 >gnl|CDD|39380 KOG4178, KOG4178, KOG4178, Soluble epoxide hydrolase [Lipid transport and metabolism]. Length = 322 Score = 84.6 bits (209), Expect = 2e-17 Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 22 GDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRL 81 G D P +LL+HG S + W I L +G+RVIA D G+G SD ++Y + Sbjct: 40 GPGDGPIVLLLHGFPESWYS-WRHQ--IPGLASRGYRVIAPDLRGYGFSDAPPHISEYTI 96 Query: 82 VFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128 + D V+LL+HLG+ K ++G+ GA +A + LFYP V ++ Sbjct: 97 DELVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVT 143 >gnl|CDD|144228 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes. Length = 225 Score = 82.2 bits (203), Expect = 1e-16 Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 33/204 (16%) Query: 57 FRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMV 116 F VIAFD G G+S + DYR +A D +LL+ LG+ KV+++G+SMG IA + Sbjct: 1 FDVIAFDLRGFGRSSPPDLA-DYRFDDLAEDLEALLQALGLDKVNLVGHSMGGLIALAYA 59 Query: 117 LFYPSYVRSVIL-GGVGSVLYDSDVVDWQSLIDSF-------LLPSIDEVQN-------- 160 YP V++++L G V S + +L+ L S++ + Sbjct: 60 AKYPDRVKALVLVGTVHPAGLSSPLTPRGNLLGLLLDNFFNRLYDSVEALLGRAIKQFQA 119 Query: 161 ---PLGKKFRK-FADLDPGNDLKALASCLSMIRKPFCQD-------DLYRIDVPVLIAVG 209 P F K F + LA ++ L IDVP LI G Sbjct: 120 LGRPFVSDFLKQFELSSLIRFSETLALDG-LLGVALGYYLVWDRSAALKDIDVPTLIIWG 178 Query: 210 SQD---DLAGSPQELMSFIPSSQY 230 D S + L + P++Q Sbjct: 179 DDDPLVPPDASEK-LAALFPNAQL 201 >gnl|CDD|36667 KOG1454, KOG1454, KOG1454, Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]. Length = 326 Score = 62.0 bits (150), Expect = 2e-10 Identities = 61/270 (22%), Positives = 94/270 (34%), Gaps = 47/270 (17%) Query: 10 SWRKYQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQ-GFRVIAFDNLGHG 68 W + GDKD P +LL+HG +S + + + LL G RV+A D GHG Sbjct: 42 KWIPNLDKYGSPGDKDKPPVLLLHGFGASS---FSWRRVVPLLSKAKGLRVLAIDLPGHG 98 Query: 69 KSDKSYIENDYRLVFMAADAVSLLEHLGI----SKVHVMGYSMGARIACSMVLFYPSYVR 124 S ++ + V L+ V ++G+S+G +A +YP V Sbjct: 99 YSS----PLPRGPLYTLRELVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPETVD 154 Query: 125 SVI-LGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKF------------RKFAD 171 S++ L +G +Y + S E+ PL K Sbjct: 155 SLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLKVVY 214 Query: 172 LDPGNDLKALASCLSMIRKPFCQDDLYR--------------------IDVPVLIAVGSQ 211 DP L+ L LS K D PVLI G + Sbjct: 215 TDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDK 274 Query: 212 DDLAGSP--QELMSFIPSSQYLNICRRDHL 239 D + +EL +P+++ + I HL Sbjct: 275 DQIVPLELAEELKKKLPNAELVEIPGAGHL 304 >gnl|CDD|32448 COG2267, PldB, Lysophospholipase [Lipid metabolism]. Length = 298 Score = 56.2 bits (135), Expect = 1e-08 Identities = 44/228 (19%), Positives = 70/228 (30%), Gaps = 44/228 (19%) Query: 18 FYDVGDKDAP---TILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSY 74 Y P ++L+HGL L +GF V A D GHG+S + Sbjct: 23 RYRTWAAPEPPKGVVVLVHGLGEHSGRYEEL---ADDLAARGFDVYALDLRGHGRSPRGQ 79 Query: 75 IENDYRLVFMAADAVSLLEHLGI----SKVHVMGYSMGARIACSMVLFYPSYVRSVILGG 130 + D + +E + V ++G+SMG IA + YP + ++L Sbjct: 80 RGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVL-- 137 Query: 131 VGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKAL--------- 181 S + ++ L + + K ++L G L Sbjct: 138 -SSPALGLGGAILRLILARLALK----LLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAA 192 Query: 182 -----------------ASCLSMIRKPFCQDDLYRIDVPVLIAVGSQD 212 L R P D I +PVL+ G D Sbjct: 193 YEADPLIGVGGPVSRWVDLALLAGRVP-ALRDAPAIALPVLLLQGGDD 239 >gnl|CDD|39610 KOG4409, KOG4409, KOG4409, Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]. Length = 365 Score = 54.2 bits (130), Expect = 4e-08 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 6/107 (5%) Query: 24 KDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYR--L 81 + ++LIHG + + LF L + V A D LG G+S + D Sbjct: 88 ANKTPLVLIHGYGAGLG---LFFRNFDDLA-KIRNVYAIDLLGFGRSSRPKFSIDPTTAE 143 Query: 82 VFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128 + +G+ K+ ++G+S G +A L YP V +IL Sbjct: 144 KEFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPERVEKLIL 190 >gnl|CDD|38195 KOG2984, KOG2984, KOG2984, Predicted hydrolase [General function prediction only]. Length = 277 Score = 50.8 bits (121), Expect = 4e-07 Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 43/218 (19%) Query: 29 ILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFM---A 85 ILLI G S +T++ + L ++A+D G+G S E + + F A Sbjct: 45 ILLIPGALGSYKTDFPPQ-LLSLFKPLQVTIVAWDPPGYGTSRPP--ERKFEVQFFMKDA 101 Query: 86 ADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQS 145 AV L+E L + V+G+S G A + V +I+ G + + + ++ Sbjct: 102 EYAVDLMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKG 161 Query: 146 LID-SFLLPSIDEVQNPLGKKF----------------RKFADLDPGNDLKALASCLSMI 188 + D + + P + +F G Sbjct: 162 IRDVNKWSARGRQ---PYEDHYGPETFRTQWAAWVDVVDQFHSFCDGR------------ 206 Query: 189 RKPFCQDDLYRIDVPVLIAVGSQDDLAGSPQELMSFIP 226 FC+ L ++ P LI G +D G P + FIP Sbjct: 207 ---FCRLVLPQVKCPTLIMHGGKDPFCGDPH--VCFIP 239 >gnl|CDD|32204 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport and metabolism]. Length = 368 Score = 50.7 bits (121), Expect = 4e-07 Identities = 34/123 (27%), Positives = 42/123 (34%), Gaps = 24/123 (19%) Query: 29 ILLIHGLASSVQTNWLFS----GWIQLLCDQG-------FRVIAFDNLGHGK-----SDK 72 +L+ H L GW L G F VI + LG K S Sbjct: 54 VLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSI 113 Query: 73 SYIENDYRLVF-------MAADAVSLLEHLGISKVH-VMGYSMGARIACSMVLFYPSYVR 124 + Y F M LL+ LGI K+ V+G SMG A + YP VR Sbjct: 114 NPGGKPYGSDFPVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVR 173 Query: 125 SVI 127 I Sbjct: 174 RAI 176 >gnl|CDD|31695 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]. Length = 620 Score = 49.4 bits (117), Expect = 9e-07 Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 34/198 (17%) Query: 24 KDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFD---NLGHGKS-----DKSYI 75 K P I+ IHG S Q + F+ IQ+L G+ V+A + + G+G+ + Sbjct: 392 KKYPLIVYIHG-GPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWG 450 Query: 76 ENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVL 135 D + A DA+ L + ++ + G S G + P + +V + Sbjct: 451 GVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAV------- 503 Query: 136 YDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKALASCLSMIRKPFCQD 195 + VDW L + P + K R P Sbjct: 504 --AGGVDWLLYFGES--------TEGLRFDPEENGGGPPEDREKYED------RSPIFYA 547 Query: 196 DLYRIDVPVLIAVGSQDD 213 D I P+L+ G +DD Sbjct: 548 D--NIKTPLLLIHGEEDD 563 >gnl|CDD|36668 KOG1455, KOG1455, KOG1455, Lysophospholipase [Lipid transport and metabolism]. Length = 313 Score = 48.0 bits (114), Expect = 3e-06 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 31/226 (13%) Query: 28 TILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKS--YIENDYRLVFMA 85 + L HG ++W + + L GF V A D GHG+SD Y+ + +V Sbjct: 56 LVFLCHGYGE--HSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHAYVPSFDLVV--- 110 Query: 86 ADAVSLLEHLGISK------VHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSD 139 D +S + + + + G SMG +A + L P++ IL + + Sbjct: 111 DDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDT 170 Query: 140 VVDW---------QSLIDSFLLPSIDEVQNPLGK--KFRKFADLDP--GNDLKALASCLS 186 LI ++ + ++ + K + RK DP L + Sbjct: 171 KPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYE 230 Query: 187 MIRK-PFCQDDLYRIDVPVLIAVGSQD---DLAGSPQELMSFIPSS 228 ++R + +L + VP LI G+ D D S +EL SS Sbjct: 231 LLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKVS-KELYEKASSS 275 >gnl|CDD|37593 KOG2382, KOG2382, KOG2382, Predicted alpha/beta hydrolase [General function prediction only]. Length = 315 Score = 44.6 bits (105), Expect = 3e-05 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 10/110 (9%) Query: 24 KDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVF 83 + AP +++HGL S + NW L G V A D HG S K + N Sbjct: 50 ERAPPAIILHGLLGSKE-NWRSVA-KNLSRKLGRDVYAVDVRNHGSSPKITVHNYEA--- 104 Query: 84 MAADAVSLLEHLGIS----KVHVMGYSMG-ARIACSMVLFYPSYVRSVIL 128 MA D ++ +G S V ++G+SMG ++A + L P + +I+ Sbjct: 105 MAEDVKLFIDGVGGSTRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIV 154 >gnl|CDD|37775 KOG2564, KOG2564, KOG2564, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]. Length = 343 Score = 41.9 bits (98), Expect = 2e-04 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%) Query: 24 KDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVF 83 + P +LL+HG SS + +F+ ++ R +A D GHG++ K E+D L Sbjct: 72 TEGPILLLLHGGGSSALSFAIFASELKSKIRC--RCLALDLRGHGET-KVENEDDLSLET 128 Query: 84 MAADAVSLLEHL---GISKVHVMGYSMGARIA 112 M+ D ++++ L ++ ++G+SMG IA Sbjct: 129 MSKDFGAVIKELFGELPPQIILVGHSMGGAIA 160 >gnl|CDD|30778 COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]. Length = 345 Score = 40.7 bits (95), Expect = 4e-04 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 22/121 (18%) Query: 5 VKFFRSWRKYQFAFYDVGDKD---------APTILLIHGLASSVQTNWLFSGWIQLLCDQ 55 K + + + D D P ++L HGL S + + G ++ L + Sbjct: 45 PKVAYTRERLETPDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSSNSPYA-RGLMRALSRR 103 Query: 56 GFRVIAFDNLGHGKSDKSYIENDYRLVFMA---ADAVSLLEHL----GISKVHVMGYSMG 108 G+ V+ F G N ++ + D L+ L ++ +G+S+G Sbjct: 104 GWLVVVFHFRGCSGE-----ANTSPRLYHSGETEDIRFFLDWLKARFPPRPLYAVGFSLG 158 Query: 109 A 109 Sbjct: 159 G 159 >gnl|CDD|29805 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.. Length = 275 Score = 40.3 bits (94), Expect = 5e-04 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%) Query: 23 DKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLV 82 + PT +IHG SS + +W+ L + VI D ++ +Y + Sbjct: 33 NPSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGR--GANPNYPQAVNNTR 90 Query: 83 FMAADAVSLLEHL------GISKVHVMGYSMGARIA 112 + A+ L+ L + VH++G+S+GA +A Sbjct: 91 VVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVA 126 >gnl|CDD|31833 COG1647, COG1647, Esterase/lipase [General function prediction only]. Length = 243 Score = 40.2 bits (94), Expect = 6e-04 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 21/192 (10%) Query: 29 ILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFM-AAD 87 +LL+HG + + + ++ + G+ V A GHG + +++ R + D Sbjct: 18 VLLLHGFTGTPRDVRMLGRYLN---ENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVED 74 Query: 88 AVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQSLI 147 L+ G ++ V+G SMG A + YP + + +V W+ +I Sbjct: 75 GYRDLKEAGYDEIAVVGLSMGGVFALKLAYHYP-------PKKIVPMCAPVNVKSWRIII 127 Query: 148 DSFL-----LPSIDEVQNPLGKKFRKFADLDPGNDLKALASCLSMIRKPFCQDDLYRIDV 202 + L + K K P L + R L +I Sbjct: 128 EGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPMTTTAQLKKLIKDAR-----RSLDKIYS 182 Query: 203 PVLIAVGSQDDL 214 P L+ G QD++ Sbjct: 183 PTLVVQGRQDEM 194 >gnl|CDD|30749 COG0400, COG0400, Predicted esterase [General function prediction only]. Length = 207 Score = 37.2 bits (86), Expect = 0.005 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 15/127 (11%) Query: 14 YQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWI-QLLCDQGFRVI----AFDNLGHG 68 + GD AP ++L+HGL +L + A + Sbjct: 6 FIPRIEKPGDPAAPLLILLHGLGGD---ELDLVPLPELILPNATLVSPRGPVAENGGPRF 62 Query: 69 KSDKSYIENDYRLVFMAADAV-----SLLEHLGI--SKVHVMGYSMGARIACSMVLFYPS 121 D + + + + L E GI S++ ++G+S GA IA S+ L P Sbjct: 63 FRRYDEGSFDQEDLDLETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPG 122 Query: 122 YVRSVIL 128 IL Sbjct: 123 LFAGAIL 129 >gnl|CDD|143919 pfam00151, Lipase, Lipase. Length = 329 Score = 35.9 bits (83), Expect = 0.011 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%) Query: 25 DAPTILLIHG-LASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSD-KSYIENDYRLV 82 T +IHG + +WL L +G VI D G G + + R+V Sbjct: 70 SKKTRAIIHGFTDKGQEESWLSDMCKNLFQVEGVNVIVVD-WGSGSTTFYRQATLNVRVV 128 Query: 83 --FMAADAVSLLEHLGIS--KVHVMGYSMGARIA 112 +A V L E L +S VH++G+S+GA +A Sbjct: 129 GAEVAKLLVELEEELNVSPENVHLIGHSLGAHVA 162 >gnl|CDD|37049 KOG1838, KOG1838, KOG1838, Alpha/beta hydrolase [General function prediction only]. Length = 409 Score = 35.6 bits (82), Expect = 0.013 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 13/100 (13%) Query: 22 GDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRL 81 D P ++++ GL +++ + +G+RV+ F++ G G + Sbjct: 121 DDGTDPIVVILPGLTGGSHESYV-RHLVHEAQRKGYRVVVFNHRGLG-----GSKLTTPR 174 Query: 82 VFMAADAVSL---LEHLG----ISKVHVMGYSMGARIACS 114 +F A L + H+ + + +G+SMG I + Sbjct: 175 LFTAGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTN 214 >gnl|CDD|37223 KOG2012, KOG2012, KOG2012, Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]. Length = 1013 Score = 35.7 bits (82), Expect = 0.014 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 20/110 (18%) Query: 98 SKVHVMGY-SMGARIACSMVLFYPSYVRSVILGGVGSV-LYDSDVVDWQSLIDSFLLPSI 155 S V + G +G IA +++IL GV SV L+D V L F L Sbjct: 38 SNVLISGLQGLGVEIA-----------KNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEE 86 Query: 156 DEVQNPLGKKFRKFADLDPGNDLKALASCLSMIRKPFCQDDLYRIDVPVL 205 D +N K A+L+ + L P ++ L V VL Sbjct: 87 DIGKNRAEASVEKLAELNNYVPVVVLTG-------PLTEEFLSDFQVVVL 129 >gnl|CDD|37492 KOG2281, KOG2281, KOG2281, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]. Length = 867 Score = 35.0 bits (80), Expect = 0.024 Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 19/132 (14%) Query: 24 KDAPTILLIHGLASSVQT-NWLFSGWIQL----LCDQGFRVIAFDNLG---HGKSDKSYI 75 K PT+L ++G VQ N F G L L G+ V+ DN G G +S+I Sbjct: 640 KKYPTVLNVYG-GPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHI 698 Query: 76 ENDYRLVFMAADAV----SLLEHLG---ISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128 + V D V L E G + +V V G+S G ++ + YP+ R I Sbjct: 699 KKKMGQV-EVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIA 757 Query: 129 GGVGSV--LYDS 138 G + LYD+ Sbjct: 758 GAPVTDWRLYDT 769 >gnl|CDD|33312 COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 312 Score = 33.8 bits (77), Expect = 0.051 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 16/123 (13%) Query: 23 DKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDK----SYIEND 78 AP ++++HG S +GW L +GF V D + + D Sbjct: 58 PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWFGPAD 117 Query: 79 YRL-----VFMAADAVSLLEHLGI--SKVHVMGYSMGARIACSMVLFYPSYVRSVILGGV 131 R F+ A L+ GI ++V+V G S G R+A + YP I + Sbjct: 118 RRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPD-----IFAAI 172 Query: 132 GSV 134 V Sbjct: 173 APV 175 >gnl|CDD|38142 KOG2931, KOG2931, KOG2931, Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]. Length = 326 Score = 33.3 bits (76), Expect = 0.068 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 10/109 (9%) Query: 27 PTILLIHGLASSVQTNWLFSGWIQLLCDQG----FRVIAFDNLGHGKSDKSYIENDYRLV 82 P I+ H L + ++ F G+ F V D G + Y Sbjct: 47 PAIITYHDLGLNHKSC--FQGFFNFPDMAEILEHFCVYHVDAPGQ-EDGAPSFPEGYPYP 103 Query: 83 FM---AADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128 M A +L+H G+ V MG GA I L +P V ++L Sbjct: 104 SMDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPERVLGLVL 152 >gnl|CDD|145034 pfam01674, Lipase_2, Lipase (class 2). This family consists of hypothetical C. elegans proteins and lipases. Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids. One member, a triacylglycerol lipase, is a extracellular lipase from B. subtilis 168. Length = 218 Score = 33.1 bits (76), Expect = 0.072 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 29/114 (25%) Query: 29 ILLIHGLASSVQTNWLFSGWIQLLCDQGF---RVIAFDNLGHGKSDKSYIENDYRLVFMA 85 ++ +HG + W S Q ++G+ + A G G S + M Sbjct: 4 VIFVHGNSGLAAGGW--SKLRQYFKERGYTLAELYAT-TWGDGNLLTSL-----QRAEMK 55 Query: 86 ADAVSLLEHLGIS-------KVHVMGYSMGARIACSMVLFYPSYVRSVILGGVG 132 + V + + KV ++ +SMG IA R ILGG Sbjct: 56 CEYVKQIRRFIEAVLGYTGAKVDIVAHSMGVPIA-----------RKAILGGNC 98 >gnl|CDD|30761 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 236 Score = 32.7 bits (74), Expect = 0.11 Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 37/134 (27%) Query: 18 FYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCD----QGFRVIAFDNLGH--GKSD 71 G P ++++H + + I+ + G+ V+A D G +D Sbjct: 19 ARPAGAGGFPGVIVLHE-------IFGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTD 71 Query: 72 KSYIENDYR--------------LVFMAADAVSLLEHLGISKVHVMGYSMGARIACSM-- 115 + + A D ++ + ++ V+G+ MG +A Sbjct: 72 IEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAAT 131 Query: 116 --------VLFYPS 121 V FY Sbjct: 132 RAPEVKAAVAFYGG 145 >gnl|CDD|73270 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.. Length = 286 Score = 31.7 bits (72), Expect = 0.21 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 124 RSVILGGVGSV-LYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDP 174 +++IL GV SV L+D+ W L F L D +N + A+L+P Sbjct: 36 KNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP 87 >gnl|CDD|73271 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.. Length = 197 Score = 30.9 bits (70), Expect = 0.31 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 123 VRSVILGGVGSV-LYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKAL 181 ++++L G+GS+ + D V + L FL+P+ D QN + L+P + Sbjct: 37 AKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD 96 Query: 182 ASCLSMIRKPF 192 +S + F Sbjct: 97 TDDISEKPEEF 107 >gnl|CDD|111194 pfam02273, Acyl_transf_2, Acyl transferase. This bacterial family of Acyl transferases (or myristoyl-acp-specific thioesterases) catalyse the first step in the bioluminescent fatty acid reductase system. Length = 294 Score = 30.6 bits (69), Expect = 0.42 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 15/97 (15%) Query: 23 DKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGH-GKSDKSYIENDYRL 81 K TI++ G A + F+G + L GF VI +D+L H G S E Sbjct: 27 PKRNNTIVIASGFARRMDH---FAGLAEYLSTNGFHVIRYDSLHHVGLSSGEIDE----- 78 Query: 82 VFMAADAVSL------LEHLGISKVHVMGYSMGARIA 112 M+ SL L+ GI+ + ++ S+ ARIA Sbjct: 79 FTMSVGKNSLLTVIDWLKTRGINNIGLIASSLSARIA 115 >gnl|CDD|33856 COG4099, COG4099, Predicted peptidase [General function prediction only]. Length = 387 Score = 29.2 bits (65), Expect = 1.3 Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 12/133 (9%) Query: 3 NEVKFFRSWRKYQFAFYDVGDKDAPTILLIHG--LASSVQTNWLFSGWIQLLCDQ---GF 57 NE+K+ R Y Y K P +L +HG S L SG + Sbjct: 172 NELKY----RLYTPKDYAPDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQC 227 Query: 58 RVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGI--SKVHVMGYSMGARIACSM 115 V+A + V L I S+++V+G S G ++ Sbjct: 228 FVLAPQYNPIFADSEEKTLLYLIEKIDLILEV-LASTYNIDRSRIYVIGLSRGGFGTWAL 286 Query: 116 VLFYPSYVRSVIL 128 +P + + + Sbjct: 287 AEKFPDFFAAAVP 299 >gnl|CDD|34393 COG4782, COG4782, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 377 Score = 28.0 bits (62), Expect = 2.5 Identities = 4/26 (15%), Positives = 13/26 (50%) Query: 91 LLEHLGISKVHVMGYSMGARIACSMV 116 L + +++++ +SMG + + Sbjct: 184 LATDKPVKRIYLLAHSMGTWLLMEAL 209 >gnl|CDD|33055 COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]. Length = 445 Score = 28.0 bits (62), Expect = 2.6 Identities = 12/76 (15%), Positives = 30/76 (39%) Query: 46 SGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGY 105 ++ L +QG V S + DY L ++ ++ + G ++++GY Sbjct: 129 KSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYILEGLSEAIDTVKDITGQKDINLIGY 188 Query: 106 SMGARIACSMVLFYPS 121 +G + + + + Sbjct: 189 CVGGTLLAAALALMAA 204 >gnl|CDD|38937 KOG3733, KOG3733, KOG3733, Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]. Length = 566 Score = 27.3 bits (60), Expect = 5.0 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 6/92 (6%) Query: 168 KFADLDPGNDLKALASCLSMIRKP--FCQDDLYRIDVPVLIAVGSQDDLAGSPQELMSFI 225 +A PG + LA C R+ F +D + ID P + V + + + Sbjct: 145 PYAYPTPGTTMSPLALCQQNYRRGTIFPFNDTFDID-PHIDTVCERVP---PNETTIGVE 200 Query: 226 PSSQYLNICRRDHLLAVGDKQFKQGVVNFYAN 257 + N+ H L FK +N AN Sbjct: 201 NYLRQRNLTLNFHSLVSVQLTFKLKTINLQAN 232 >gnl|CDD|145081 pfam01738, DLH, Dienelactone hydrolase family. Length = 216 Score = 26.9 bits (60), Expect = 5.2 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 15/76 (19%) Query: 52 LCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMA---------ADAVSLLEHL------G 96 L ++G+ + D D + R + D ++ + +L Sbjct: 37 LAEEGYVALCPDLYARQGPDPTDPREAARAMRGLLSKRMEAVVDDLLAAINYLRGQPYVD 96 Query: 97 ISKVHVMGYSMGARIA 112 KV V+G+ +G R+A Sbjct: 97 TKKVGVVGFCLGGRLA 112 >gnl|CDD|107300 cd06305, PBP1_methylthioribose_binding_like, Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR. Length = 273 Score = 26.9 bits (60), Expect = 5.8 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Query: 29 ILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDN 64 I++ HG A ++ W++ D G V+AFD Sbjct: 59 IIIQHGRAEVLK------PWVKRALDAGIPVVAFDV 88 >gnl|CDD|146268 pfam03537, DUF297, TM1410 hypothetical-related protein. Length = 203 Score = 26.9 bits (60), Expect = 5.9 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Query: 42 NWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYI-ENDYRLVFMAADAVSLLEHL 95 +++ + LL +GF + DN+ SY N AAD V+L+ L Sbjct: 89 DFIMDARLDLLWAKGFDGVFLDNVD------SYQNANGTGRPLTAADLVALIREL 137 >gnl|CDD|111936 pfam03096, Ndr, Ndr family. This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.). Length = 285 Score = 26.5 bits (59), Expect = 7.1 Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 84 MAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128 +A +L+H + V MG GA I L +P V ++L Sbjct: 85 LADMLPVVLDHFRLKSVIGMGVGAGAYILARFALKHPERVEGLVL 129 >gnl|CDD|33323 COG3520, COG3520, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 335 Score = 26.4 bits (58), Expect = 8.2 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 7 FFRSWRKYQFAF-YDVGDKDA--PTILLIHGLASSVQTNWLFSGWIQLLC 53 F+R+WRKY++A +D G DA +L + GL + L L Sbjct: 128 FYRAWRKYRYAVGFDRGADDAFSAQLLALSGLGPPGLRDKLADNHSARLA 177 >gnl|CDD|37835 KOG2624, KOG2624, KOG2624, Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]. Length = 403 Score = 26.1 bits (57), Expect = 8.8 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 18/117 (15%) Query: 27 PTILLIHGLASSVQTNWLFSGWIQ----LLCDQGFRVIAFDNLGHGKSDKSYIEN----- 77 P +LL HGL +S ++W+ +G Q LL D G+ V +N G+ S K + Sbjct: 74 PVVLLQHGLLASS-SSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSPSSDK 132 Query: 78 ---DYRLVFMAA-DAVSLLEHL----GISKVHVMGYSMGARIACSMVLFYPSYVRSV 126 D+ M D ++++++ G K+H +G+S G M+ P Y + + Sbjct: 133 EFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKI 189 >gnl|CDD|35102 COG5543, COG5543, Uncharacterized conserved protein [Function unknown]. Length = 1400 Score = 26.2 bits (57), Expect = 9.0 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Query: 83 FMAADAVSLLEHLGISK--VHVMGYSMGARIA--CSMVLFYPS--YVRSVILGGVGSVLY 136 A+SL+ + ++V+ S +A M+L Y Y+ + L G+ S Y Sbjct: 1037 SDLKHAISLMRMYRGQENNIYVVDGSKQLYLAQILDMLLKYEDSIYLDDICLLGLYSPFY 1096 Query: 137 DSDVVDWQSLIDSF 150 ++ + Q + +F Sbjct: 1097 EAQLSTLQYMNTNF 1110 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.325 0.141 0.429 Gapped Lambda K H 0.267 0.0735 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,322,694 Number of extensions: 175873 Number of successful extensions: 550 Number of sequences better than 10.0: 1 Number of HSP's gapped: 528 Number of HSP's successfully gapped: 51 Length of query: 261 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 169 Effective length of database: 4,275,709 Effective search space: 722594821 Effective search space used: 722594821 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (25.3 bits)