RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780167|ref|YP_003064580.1| hypothetical protein
CLIBASIA_00250 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>gnl|CDD|150882 pfam10276, zf-CHCC, Zinc-finger domain.  This is a short
          zinc-finger domain conserved from fungi to humans. It
          is Cx8Hx14Cx2C.
          Length = 40

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 21 GVKKFMCAGTSPPLDHPHVFINMGEENEKH-CPYCSTLY 58
          G ++  C G   PL HP V+IN+ +E     CPYC   +
Sbjct: 1  GGRRVSCDGGGGPLGHPRVYINLDDETGPVECPYCGLRF 39


>gnl|CDD|178874 PRK00114, hslO, Hsp33-like chaperonin; Reviewed.
          Length = 293

 Score = 27.1 bits (61), Expect = 1.1
 Identities = 6/16 (37%), Positives = 7/16 (43%)

Query: 48  EKHCPYCSTLYHFDSS 63
           E  C +C   Y FD  
Sbjct: 268 EMVCQFCGNKYLFDEE 283


>gnl|CDD|148058 pfam06226, DUF1007, Protein of unknown function (DUF1007).
          Family of conserved bacterial proteins with unknown
          function.
          Length = 212

 Score = 26.1 bits (58), Expect = 1.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 25 FMCAGTSPPLDHPHVFINM 43
           + A + P   HPHVFI+ 
Sbjct: 9  GLVALSLPAFAHPHVFIDA 27


>gnl|CDD|183852 PRK13030, PRK13030, 2-oxoacid ferredoxin oxidoreductase;
           Provisional.
          Length = 1159

 Score = 26.1 bits (58), Expect = 2.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 28  AGTSPPLDHPHVFINMGE 45
            G +P  +  HVF N+G+
Sbjct: 478 IGHAPFTETKHVFQNLGD 495


>gnl|CDD|179295 PRK01402, hslO, Hsp33-like chaperonin; Reviewed.
          Length = 328

 Score = 25.7 bits (57), Expect = 2.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 51  CPYCSTLYHFD 61
           C +CS +Y FD
Sbjct: 311 CEFCSRVYRFD 321


>gnl|CDD|180808 PRK07048, PRK07048, serine/threonine dehydratase; Validated.
          Length = 321

 Score = 25.4 bits (56), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 32  PPLDHPHV 39
           PP DHPHV
Sbjct: 148 PPYDHPHV 155


>gnl|CDD|169040 PRK07636, ligB, ATP-dependent DNA ligase; Reviewed.
          Length = 275

 Score = 25.1 bits (55), Expect = 4.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 33  PLDHPHVFINMGEENE 48
            L HP+V I  G E  
Sbjct: 132 LLPHPNVKIIEGIEGH 147


>gnl|CDD|181688 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase;
           Validated.
          Length = 1165

 Score = 24.0 bits (53), Expect = 8.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 29  GTSPPLDHPHVFINMG 44
           G +P  D  HVF N+G
Sbjct: 492 GQAPFTDEKHVFQNLG 507


>gnl|CDD|180002 PRK05301, PRK05301, pyrroloquinoline quinone biosynthesis protein
          PqqE; Provisional.
          Length = 378

 Score = 24.0 bits (53), Expect = 8.3
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 50 HCPYCS 55
           CPYCS
Sbjct: 29 QCPYCS 34


>gnl|CDD|181724 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.
          Length = 501

 Score = 24.0 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 21  GVKKFMCAGTSPPLDHPHVF-INM 43
           G KK   A  +PP+  P+V+ I+M
Sbjct: 385 GAKKVYFASAAPPVRFPNVYGIDM 408


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,236,527
Number of extensions: 58613
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 17
Length of query: 78
Length of database: 5,994,473
Length adjustment: 48
Effective length of query: 30
Effective length of database: 4,957,289
Effective search space: 148718670
Effective search space used: 148718670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)