RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780167|ref|YP_003064580.1| hypothetical protein
CLIBASIA_00250 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>2jz8_A Uncharacterized protein BH09830; zinc binding, structural
          genomics, unknown function, PSI-2, protein structure
          initiative; NMR {Bartonella henselae str} (A:)
          Length = 87

 Score =  126 bits (319), Expect = 9e-31
 Identities = 46/77 (59%), Positives = 57/77 (74%)

Query: 1  MVDHPIPHFQNDRGHSRIKIGVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHF 60
          M D+ IPHFQND G+  I+IGVK+FMC G + P DHPH+FI+MG  +EK CPYCSTLY +
Sbjct: 1  MADYNIPHFQNDLGYKIIEIGVKEFMCVGATQPFDHPHIFIDMGSTDEKICPYCSTLYRY 60

Query: 61 DSSLDSKETLPVGCLLS 77
          D SL   +T P GCL +
Sbjct: 61 DPSLSYNQTNPTGCLYN 77


>2jvm_A Uncharacterized protein; alpha+beta, structural genomics,
          unknown function, PSI-2, protein structure initiative;
          NMR {Rhodobacter sphaeroides 2} (A:)
          Length = 80

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 18 IKIGVKKFMCAGTSPPLDHPHVFINMGEENEKH-CPYCSTLYHFDSSLDSKETLP 71
          + +   K  C G    L HP V++++  E     C YC   Y  +S   +K    
Sbjct: 22 VVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRYIHESFAAAKLEHH 76


>2jrr_A Uncharacterized protein; solution structure, SIR90,
          structural genomics, PSI-2, protein structure
          initiative; NMR {Silicibacter pomeroyi} (A:)
          Length = 67

 Score = 33.6 bits (77), Expect = 0.008
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 27 CAGTSPPLDHPHVFINMG-EENEKHCPYCSTLYHFDSSLDSKETLP 71
          C G    L HP V++ +  +     CPYC   Y    S        
Sbjct: 18 CDGGEGALGHPRVWLQIPEDTGWVECPYCDCKYVLKGSKADALEHH 63


>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular
          chaperone; 2.70A {Escherichia coli} (A:179-292)
          Length = 114

 Score = 27.1 bits (60), Expect = 1.0
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 3/22 (13%)

Query: 43 MGEEN---EKHCPYCSTLYHFD 61
          +  E+   + HC YC   Y F+
Sbjct: 74 ILAEDGEIDXHCDYCGNHYLFN 95


>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal
          engineering, molecular chaperone, redox-active center,
          PSI; 1.97A {Bacillus subtilis} (A:238-291)
          Length = 54

 Score = 25.0 bits (55), Expect = 3.2
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 3/22 (13%)

Query: 43 MGEENEK---HCPYCSTLYHFD 61
          M EE+ +    C +C+  Y F 
Sbjct: 20 MIEEDGQAEAVCHFCNEKYLFT 41


>1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed
           mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A
           {Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B*
           1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2*
           2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* (2:)
          Length = 261

 Score = 24.8 bits (54), Expect = 3.8
 Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 2/19 (10%)

Query: 37  PHVFINMGEENEKH--CPY 53
           PH FIN+   N      PY
Sbjct: 186 PHQFINLRSNNSATLIVPY 204


>1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint
          center for structural genomics, JCSG, protein structure
          initiative, PSI; HET: UNL; 2.20A {Thermotoga maritima}
          (A:245-302)
          Length = 58

 Score = 24.3 bits (53), Expect = 6.2
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 43 MGEEN--EKHCPYCSTLYHFD 61
          M +E   E  C +C+T Y F 
Sbjct: 21 MRKEGKGEVVCKWCNTRYVFS 41


>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex,
           DNA repair, beta sandwich, zinc finger, helix two-turns
           helix, hydrolase/DNA complex; HET: PED; 2.10A
           {Escherichia coli} (A:1-128)
          Length = 128

 Score = 23.7 bits (51), Expect = 9.1
 Identities = 6/41 (14%), Positives = 10/41 (24%)

Query: 8   HFQNDRGHSRIKIGVKKFMCAGTSPPLDHPHVFINMGEENE 48
                     + +     +     PP  H HV + M     
Sbjct: 61  ELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKV 101


>1ncq_B Coat protein VP2; HRV, pleconaril, icosahedral virus; HET:
           W11; 2.50A {Human rhinovirus 14} (B:)
          Length = 262

 Score = 23.7 bits (51), Expect = 9.1
 Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 2/19 (10%)

Query: 37  PHVFINMGEENEKH--CPY 53
           PH FIN+   N      PY
Sbjct: 185 PHQFINLRTNNTATIVIPY 203


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0727    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 631,768
Number of extensions: 24118
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 17
Length of query: 78
Length of database: 4,956,049
Length adjustment: 43
Effective length of query: 35
Effective length of database: 3,502,434
Effective search space: 122585190
Effective search space used: 122585190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.0 bits)