RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780167|ref|YP_003064580.1| hypothetical protein
CLIBASIA_00250 [Candidatus Liberibacter asiaticus str. psy62]
(78 letters)
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural
genomics, unknown function, PSI-2, protein structure
initiative; NMR {Bartonella henselae str}
Length = 87
Score = 104 bits (260), Expect = 6e-24
Identities = 46/77 (59%), Positives = 57/77 (74%)
Query: 1 MVDHPIPHFQNDRGHSRIKIGVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHF 60
M D+ IPHFQND G+ I+IGVK+FMC G + P DHPH+FI+MG +EK CPYCSTLY +
Sbjct: 1 MADYNIPHFQNDLGYKIIEIGVKEFMCVGATQPFDHPHIFIDMGSTDEKICPYCSTLYRY 60
Query: 61 DSSLDSKETLPVGCLLS 77
D SL +T P GCL +
Sbjct: 61 DPSLSYNQTNPTGCLYN 77
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Rhodobacter sphaeroides 2}
Length = 80
Score = 52.2 bits (125), Expect = 3e-08
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 18 IKIGVKKFMCAGTSPPLDHPHVFINMGEENEKH-CPYCSTLY 58
+ + K C G L HP V++++ E C YC Y
Sbjct: 22 VVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRY 63
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural
genomics, PSI-2, protein structure initiative; NMR
{Silicibacter pomeroyi}
Length = 67
Score = 49.1 bits (117), Expect = 3e-07
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 18 IKIGVKKFMCAGTSPPLDHPHVFINMG-EENEKHCPYCSTLY 58
+ + C G L HP V++ + + CPYC Y
Sbjct: 9 KIVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKY 50
>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal
engineering, molecular chaperone, redox-active center,
PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
Length = 291
Score = 26.5 bits (58), Expect = 1.4
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 43 MGEENEK---HCPYCSTLYHFD 61
M EE+ + C +C+ Y F
Sbjct: 257 MIEEDGQAEAVCHFCNEKYLFT 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 25.3 bits (55), Expect = 3.4
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 30/61 (49%)
Query: 8 HFQNDRGHSRIKI----GVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHFDSS 63
H + +++I G K + +G PP +LY + +
Sbjct: 359 HLPAGK---QVEISLVNGAKNLVVSG--PP---------------------QSLYGLNLT 392
Query: 64 L 64
L
Sbjct: 393 L 393
>1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI; HET: UNL; 2.20A {Thermotoga maritima} SCOP:
d.193.1.1 g.81.1.1
Length = 302
Score = 25.4 bits (55), Expect = 3.4
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 43 MGEEN--EKHCPYCSTLYHFD 61
M +E E C +C+T Y F
Sbjct: 265 MRKEGKGEVVCKWCNTRYVFS 285
>2bbz_A Viral CAsp8 and FADD-like apoptosis regulator; death effector
domain, viral protein; 3.80A {Molluscum contagiosum
virus subtype 1}
Length = 249
Score = 25.2 bits (55), Expect = 3.5
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 46 ENEKHCPYCSTLYHFDSSLDSKET 69
+ K P L H LDS E
Sbjct: 2 SDSKEVPSLPFLRHLLEELDSHED 25
>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone;
2.70A {Escherichia coli} SCOP: d.193.1.1 PDB: 1xjh_A
Length = 292
Score = 25.4 bits (55), Expect = 3.6
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 42 NMGEENEK---HCPYCSTLYHFD 61
++ E+ + HC YC Y F+
Sbjct: 251 SILAEDGEIDMHCDYCGNHYLFN 273
>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein;
1.20A {Molluscum contagiosum virus subtype 1} PDB:
2f1s_A
Length = 195
Score = 25.1 bits (55), Expect = 3.7
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 46 ENEKHCPYCSTLYHFDSSLDSKET 69
+ K P L H LDS E
Sbjct: 2 SDSKEVPSLPFLRHLLEELDSHED 25
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_A
Length = 325
Score = 24.6 bits (53), Expect = 6.1
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 8/34 (23%)
Query: 26 MCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYH 59
+CA T + I + P + Y
Sbjct: 273 ICAAT-------YKPIYEDTPSVS-DPLTGSKYV 298
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1 PDB: 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 525
Score = 23.8 bits (51), Expect = 8.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 32 PPLDHPHVFINMGEENEKHCPYC 54
P DH V ++ G+ NE Y
Sbjct: 283 LPFDHTRVVLHDGDPNEPVSDYI 305
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 320
Score = 23.8 bits (51), Expect = 8.8
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 26 MCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYH 59
+CA + P I G+ EK CP Y
Sbjct: 264 ICAASYRP-------IYRGKPVEK-CPLSGACYS 289
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.140 0.461
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 699,169
Number of extensions: 26846
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 22
Length of query: 78
Length of database: 5,693,230
Length adjustment: 47
Effective length of query: 31
Effective length of database: 4,553,762
Effective search space: 141166622
Effective search space used: 141166622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)