HHsearch alignment for GI: 254780168 and conserved domain: COG0654

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].
Probab=100.00  E-value=0  Score=378.40  Aligned_cols=353  Identities=30%  Similarity=0.420  Sum_probs=262.4

Q ss_pred             CEECCHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf             38775389999999999779859999568-76555771366788899999988994789862688430699978854433
Q gi|254780168|r    1 MIIGAGISGLTLAASLGHRGIQSCVLEKK-DQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKEL   79 (380)
Q Consensus         1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~-~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~   79 (380)
T Consensus         6 ~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~-~~   84 (387)
T COG0654           6 AIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR-RL   84 (387)
T ss_pred             EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCC-EE
T ss_conf             99997899999999998289968999077611355755999898999999984990777615788603799965996-38


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCCCC-CCCCEEEEEEEEECCCC
Q ss_conf             345543234444782478620001347889973206872564210123443------21123-45310356899743676
Q gi|254780168|r   80 SRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPD------CTQIS-KINNQKPDLLVGADGLN  152 (380)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~------~~~~~-~~~~~~adlvIgADG~~  152 (380)
T Consensus        85 ~~~~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~  161 (387)
T COG0654          85 LIFDAAELGR---GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN  161 (387)
T ss_pred             EEECHHHCCC---CCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEECCCEEEECCEEEECCCCC
T ss_conf             9815221687---7627998889999999999871898299957779998853973799990399199759999889987


Q ss_pred             CCCHHHCCCCC-CC-CCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf             63121128533-44-31101578603654465545667608997654057888404897379999845774211123455
Q gi|254780168|r  153 SNIRHYIDTQP-IT-FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR  230 (380)
Q Consensus       153 S~vR~~l~~~~-~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (380)
T Consensus       162 S~vR~~~~~~~~~~~~y~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~-  235 (387)
T COG0654         162 SAVRRAAGIAEFSGRDYGQTALVANVEPE----EPHEGRAGERFTHAGPFALLPLPD-NRSSVVWSLPPGPAEDLQGLS-  235 (387)
T ss_pred             HHHHHHCCCCCCCCCCCCEEEEEEEECCC----CCCCCCEEEEECCCCCEEEEECCC-CCEEEEEECCCCHHHHHCCCC-
T ss_conf             69997469876557755506999970377----888871689923897679987488-966899991386145402378-


Q ss_pred             CCCCHHHHHHHHHHCCCCC--CEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHH
Q ss_conf             3222389898632128022--20110023321012334654210146871121111124483033420130367999999
Q gi|254780168|r  231 SEIHKEWFVKHLTNWHQEI--IQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSY  308 (380)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~  308 (380)
T Consensus       236 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~-~~~Rv~LiGDAAH~~~P~~gQG~nlg~~Da~~La~  310 (387)
T COG0654         236 ----DEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERY-RRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAE  310 (387)
T ss_pred             ----HHHHHHHHHHHCCCCCCCCEEEECCCCEECCCCCCEECCE-ECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             ----6889999998649743356045535320122124120113-64888999556676898610457677989999999


Q ss_pred             HHCCCC---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHH
Q ss_conf             852489---8-9999999998679999999999998898367898-9999999998515333777
Q gi|254780168|r  309 LLGKKT---I-PAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHK  368 (380)
Q Consensus       309 ~L~~~~---~-~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~  368 (380)
T Consensus       311 ~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~  375 (387)
T COG0654         311 ALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLPPLR  375 (387)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             99975416851899999999978899999999999886434476177787888987402150147