HHsearch alignment for GI: 254780168 and conserved domain: PRK05335
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed.
Probab=96.89 E-value=0.0012 Score=43.43 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=56.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC------CCCEEEECH--------H----HHHHHHHCC-CHHHH-HH
Q ss_conf 3877538999999999977985999956876555------771366788--------8----999999889-94789-86
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD------SGFGIQISP--------N----ASRILKRIG-ILDQL-ED 60 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~------~g~gi~l~p--------~----~~~~L~~lG-i~~~~-~~ 60 (380)
T Consensus 7 iVIGgGhAG~EAA~a~Ar~G~~v~L~emrp~~~tpah~~d~iaem~CnpSigg~~~~~akG~L~~EidaLgglm~~~aD~ 86 (434)
T PRK05335 7 NVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDKFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIIEAADA 86 (434)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99898689999999999689967999933566777624666368735645688864442058999999846989999898
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 2688430699978854433345543234444782478620001347889973206872564210
Q gi|254780168|r 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLST 124 (380)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~ 124 (380)
T Consensus 87 ~~v-------------------PAg---------~alaVDR~~y~~~m~~~l~~~pni~i~~~e 122 (434)
T PRK05335 87 HRV-------------------PAG---------GALAVDREGFSAYVTEALKNHPLITVIREE 122 (434)
T ss_pred HCC-------------------CCC---------CHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 667-------------------872---------178998999999999999749994999844