HHsearch alignment for GI: 254780168 and conserved domain: TIGR01317

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.54  E-value=7.7e-08  Score=72.29  Aligned_cols=82  Identities=27%  Similarity=0.419  Sum_probs=47.1

Q ss_pred             EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCEEEECHHH----H-HHHHHCCCHHHHHHCCCCC-CCEEEEECC
Q ss_conf             877538999999999977985999956876555-77136678889----9-9999889947898626884-306999788
Q gi|254780168|r    2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-SGFGIQISPNA----S-RILKRIGILDQLEDIWIEP-EDFVFRSGS   74 (380)
Q Consensus         2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~-~g~gi~l~p~~----~-~~L~~lGi~~~~~~~~~~~-~~~~~~~~~   74 (380)
T Consensus       156 VVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGI---PnmKLdK~e~v~RRi---~~l~aEG~~FvtnteiGdWd  229 (517)
T TIGR01317       156 VVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGI---PNMKLDKEEIVDRRI---DLLEAEGVDFVTNTEIGDWD  229 (517)
T ss_pred             EECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC---CCCCCCHHHHHHHHH---HHHHHCCCCCCCCCCCCCCC
T ss_conf             975675799999998535883899743678886302488---874337388999999---99874784201783004653


Q ss_pred             CCCCCCCCCCCCCCC
Q ss_conf             544333455432344
Q gi|254780168|r   75 TLKELSRFSCKNYSR   89 (380)
Q Consensus        75 ~~~~~~~~~~~~~~~   89 (380)
T Consensus       230 enskitnlsk~di~~  244 (517)
T TIGR01317       230 ENSKITNLSKKDISA  244 (517)
T ss_pred             CCCCEECCCCCCCCH
T ss_conf             444200022342687