HHsearch alignment for GI: 254780168 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.54 E-value=7.7e-08 Score=72.29 Aligned_cols=82 Identities=27% Similarity=0.419 Sum_probs=47.1
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCEEEECHHH----H-HHHHHCCCHHHHHHCCCCC-CCEEEEECC
Q ss_conf 877538999999999977985999956876555-77136678889----9-9999889947898626884-306999788
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-SGFGIQISPNA----S-RILKRIGILDQLEDIWIEP-EDFVFRSGS 74 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~-~g~gi~l~p~~----~-~~L~~lGi~~~~~~~~~~~-~~~~~~~~~ 74 (380)
T Consensus 156 VVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGI---PnmKLdK~e~v~RRi---~~l~aEG~~FvtnteiGdWd 229 (517)
T TIGR01317 156 VVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGI---PNMKLDKEEIVDRRI---DLLEAEGVDFVTNTEIGDWD 229 (517)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC---CCCCCCHHHHHHHHH---HHHHHCCCCCCCCCCCCCCC
T ss_conf 975675799999998535883899743678886302488---874337388999999---99874784201783004653
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 544333455432344
Q gi|254780168|r 75 TLKELSRFSCKNYSR 89 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~ 89 (380)
T Consensus 230 enskitnlsk~di~~ 244 (517)
T TIGR01317 230 ENSKITNLSKKDISA 244 (517)
T ss_pred CCCCEECCCCCCCCH
T ss_conf 444200022342687