HHsearch alignment for GI: 254780168 and conserved domain: TIGR01816
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=95.33 E-value=0.018 Score=35.49 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=88.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC-CCCC----CCC---CEEE-EC---------------------HHHHHHHH
Q ss_conf 38775389999999999779859999568-7655----577---1366-78---------------------88999999
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK-DQLS----DSG---FGIQ-IS---------------------PNASRILK 50 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~-~~~~----~~g---~gi~-l~---------------------p~~~~~L~ 50 (380)
T Consensus 6 viVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDAiE~Mc 85 (615)
T TIGR01816 6 VIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDAIEYMC 85 (615)
T ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 98868756899999863279238898313688641122344578885177879886364031000565212468998862
Q ss_pred HCCCH--HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--E---EEEEEC--CHHHHHHHHHHHHCCCEE-E
Q ss_conf 88994--789862688430699978854433345543234444782--4---786200--013478899732068725-6
Q gi|254780168|r 51 RIGIL--DQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGG--I---YGVVKR--HTLQKILLNHIQTQPLAR-L 120 (380)
Q Consensus 51 ~lGi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~i~r--~~l~~~L~~~~~~~~~~~-~ 120 (380)
T Consensus 86 ~~apeAV~ELEhmG~PFsRT-----~~GkIyQR-~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nvk~~t~FF~ 159 (615)
T TIGR01816 86 KEAPEAVLELEHMGMPFSRT-----EEGKIYQR-PFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNVKADTSFFN 159 (615)
T ss_pred HHHHHHHHHHHHCCCCCCCC-----CCCCCCCC-CCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 31357787665277797888-----89833207-7869752115633232420001420257999987666431874475
Q ss_pred EEEE---------C----CCCCCCCCCCCCCC--EEEEEEEEECCCCCCCHHHCCCCCCCCCCC---EEEEEECCCCCCC
Q ss_conf 4210---------1----23443211234531--035689974367663121128533443110---1578603654465
Q gi|254780168|r 121 HLST---------H----ITHPDCTQISKINN--QKPDLLVGADGLNSNIRHYIDTQPITFSGD---VVLRCLIPQNNAP 182 (380)
Q Consensus 121 ~~~~---------~----v~~~~~~~~~~~~~--~~adlvIgADG~~S~vR~~l~~~~~~~~~~---~~~~~~i~~~~~~ 182 (380)
T Consensus 160 E~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttn-A~t~TGDG~gi~~RaGlPlqDmE 238 (615)
T TIGR01816 160 EFYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTN-AHTLTGDGVGIVLRAGLPLQDME 238 (615)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 02211046525789588799889876058888899541078973786405676644-56552136888872688711322