HHsearch alignment for GI: 254780168 and conserved domain: TIGR01984
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=100.00 E-value=0 Score=344.62 Aligned_cols=355 Identities=21% Similarity=0.268 Sum_probs=290.8
Q ss_pred CEECCHHHHHHHHHHHHHCC-----CEEEEEECCCC-----CCC--CCCEEEECHHHHHHHHHCC-----CHHHHHHC-C
Q ss_conf 38775389999999999779-----85999956876-----555--7713667888999999889-----94789862-6
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG-----IQSCVLEKKDQ-----LSD--SGFGIQISPNASRILKRIG-----ILDQLEDI-W 62 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G-----~~v~i~Er~~~-----~~~--~g~gi~l~p~~~~~L~~lG-----i~~~~~~~-~ 62 (380)
T Consensus 3 iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~~fkD~R~~AlS~GS~~~L~~lGllqPh~W~~l~~~ra 82 (425)
T TIGR01984 3 IIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPGFFKDARSLALSYGSKQILEKLGLLQPHLWPKLAPFRA 82 (425)
T ss_pred EEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 88856589999999985067755761589865657442468642356504687689999998538633125788601367
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCC------CC-------
Q ss_conf 88430699978854433345543234444782478620001347889973206872564210123------44-------
Q gi|254780168|r 63 IEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHIT------HP------- 129 (380)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~------~~------- 129 (380)
T Consensus 83 tpI~~IhVSD-~g~fG~~~~~~~~~~~~aLG---yVV~~~~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveqlPr 158 (425)
T TIGR01984 83 TPIKDIHVSD-QGHFGATELRASEFGLPALG---YVVELADLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQLPR 158 (425)
T ss_pred CCCCEEEEEE-CCCEEEEEECHHHCCCCCCC---EEEEHHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECCCC
T ss_conf 8775168864-58300134125362876453---1421789999999998625665112575321121057863000566
Q ss_pred -------CCCCC-CCCC----CEEEEEEEEECC-----CCCCCHHHCCCCC--CCCCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf -------32112-3453----103568997436-----7663121128533--443110157860365446554566760
Q gi|254780168|r 130 -------DCTQI-SKIN----NQKPDLLVGADG-----LNSNIRHYIDTQP--ITFSGDVVLRCLIPQNNAPEFIDFQSV 190 (380)
Q Consensus 130 -------~~~~~-~~~~----~~~adlvIgADG-----~~S~vR~~l~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 190 (380)
T Consensus 159 adGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGGlfdd~~S~~r~~~~i~~~~~R~y~QtAlian~~~~~p----H~~~A 234 (425)
T TIGR01984 159 ADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGGLFDDANSKVRELLSIATEEHRDYEQTALIANVRVEQP----HQGCA 234 (425)
T ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCC----CCCCE
T ss_conf 66551035788830887564055530889855863313567889963898178606200330123100357----57606
Q ss_pred EEEECCCCEEEEEEECCC-CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 899765405788840489-7379999845774211123455322238989863212-80222011002332101233465
Q gi|254780168|r 191 NIFFGPDSHLVTYPLRED-NTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNW-HQEIIQLILQINDTHLYPLFECE 268 (380)
Q Consensus 191 ~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~l~~~~ 268 (380)
T Consensus 235 ~ERFt~~GPlALLP~~d~q~~~slvWc~~~~~a~~~~-----~L~~~eFl~~Lq~~nFG~rlG~~~~~G~r~~yPL~l~~ 309 (425)
T TIGR01984 235 FERFTPHGPLALLPLKDNQYRLSLVWCLPKEQAERLA-----NLSDAEFLAELQQANFGWRLGKITQVGERKAYPLKLVI 309 (425)
T ss_pred EEEECCCCCEEECCCCCCCCCEEEEECCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 8444777780234678999723889718978999986-----68988999998651222542057432751004366786
Q ss_pred CCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 421014687112111112448303342013036799999985248-------9899999999986799999999999988
Q gi|254780168|r 269 CKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKK-------TIPAAISAYQKVRAVRVKRIRYRTKLNQ 341 (380)
Q Consensus 269 ~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~-------~~~~~l~~Y~~~R~~~~~~i~~~s~~~~ 341 (380)
T Consensus 310 -a~~~v~~R~vliGNAAqTlHPIAGQGfNLGlRDv~~L~~~l~~~~~~~~D~G~~~~L~~Y~~~R~~D~~~t~~lT~~L~ 388 (425)
T TIGR01984 310 -AEEQVSHRVVLIGNAAQTLHPIAGQGFNLGLRDVLTLAEVLIDAREQGKDLGEYALLQEYLRRRQFDRATTIGLTDGLV 388 (425)
T ss_pred -HHHCCCCCEEEEECCHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -2101467279986513333014553016328999999999886764368888978999999876877899988878777
Q ss_pred HHHCCCCH-HHHHHHHHHHHHCCCHHHHH
Q ss_conf 98367898-99999999985153337772
Q gi|254780168|r 342 LLFHMHRP-ASLFRNAGLRLGIHKPLHKS 369 (380)
Q Consensus 342 ~~~~~~~~-~~~~r~~~l~~~~~~~~~~~ 369 (380)
T Consensus 389 ~~FsN~~~~l~~~R~LGL~~~~~~pplK~ 417 (425)
T TIGR01984 389 RLFSNQIPLLRALRNLGLLALENLPPLKK 417 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 65200348999855589999730204689