HHsearch alignment for GI: 254780168 and conserved domain: TIGR03197
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.51 E-value=0.007 Score=38.24 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=35.3
Q ss_pred EECCHHHHHHHHHHHHCCCEEEEEEECCCCCC----C--CCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 20001347889973206872564210123443----2--112345310356899743676631
Q gi|254780168|r 99 VKRHTLQKILLNHIQTQPLARLHLSTHITHPD----C--TQISKINNQKPDLLVGADGLNSNI 155 (380)
Q Consensus 99 i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~----~--~~~~~~~~~~adlvIgADG~~S~v 155 (380)
T Consensus 132 v~p~~~~~al~~~a~~g--~~~~~~~~V~~i~~~g~~~~v~~~~g~~~~ad~vV~AaG~~s~~ 192 (381)
T TIGR03197 132 LSPPQLCRALLAHAGIR--LTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred ECHHHHHHHHHHHHHHC--CEEEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCCCHHH
T ss_conf 47899999999999729--78993625899999599899998999889735589855420355