HHsearch alignment for GI: 254780168 and conserved domain: pfam01494
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=100.00 E-value=0 Score=358.05 Aligned_cols=326 Identities=18% Similarity=0.171 Sum_probs=220.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T Consensus 5 ~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~~~~g~g~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (349)
T pfam01494 5 LIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLEDRILAEGAPHEGMGLAFYNTSRRRA 84 (349)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCEE
T ss_conf 99992889999999998779989999289998878779998989999999879868998506875105999837864222
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CC--CCCCCC-----CCEEEEEEEEEC
Q ss_conf 4554323444478247862000134788997320687256421012344----32--112345-----310356899743
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DC--TQISKI-----NNQKPDLLVGAD 149 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~--~~~~~~-----~~~~adlvIgAD 149 (380)
T Consensus 85 ~~-----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adlvIgAD 158 (349)
T pfam01494 85 DL-----DFLTSPPRVTVYPQTELEPILREHAEARG-AQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCD 158 (349)
T ss_pred EC-----CCCCCCCCEEEECHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 01-----45567762688629999999999998579-9899661787752059943799984589955899976884157
Q ss_pred CCCCCCHHHCCCCCCCC-CCCEEEEEECCC-CCCCCCCCCCCEEEEE--CCCCEEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 67663121128533443-110157860365-4465545667608997--6540578884048973799998457742111
Q gi|254780168|r 150 GLNSNIRHYIDTQPITF-SGDVVLRCLIPQ-NNAPEFIDFQSVNIFF--GPDSHLVTYPLREDNTINMVFVSSKHTLKDI 225 (380)
Q Consensus 150 G~~S~vR~~l~~~~~~~-~~~~~~~~~i~~-~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (380)
T Consensus 159 G~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (349)
T pfam01494 159 GGRSPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRSRYYVQVPWDPEVEE 238 (349)
T ss_pred CCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCC
T ss_conf 77648999759997555454389999995257842123567428999718998699997279982799999707854222
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHH
Q ss_conf 23455322238989863212802220110023321012334654210146871121111124483033420130367999
Q gi|254780168|r 226 SFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYA 305 (380)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~ 305 (380)
T Consensus 239 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~ 313 (349)
T pfam01494 239 ---RPEEFTDEEAKQRLRSAVGIDL-ADVEILWKSIWGVRSRV-ATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDAFN 313 (349)
T ss_pred ---CCCCCCHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCEE-CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf ---5443899999999998648654-55563557862003567-355115989999861023886354677589999999
Q ss_pred HHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998524----8989999999998679999999999
Q gi|254780168|r 306 LSYLLGK----KTIPAAISAYQKVRAVRVKRIRYRT 337 (380)
Q Consensus 306 La~~L~~----~~~~~~l~~Y~~~R~~~~~~i~~~s 337 (380)
T Consensus 314 La~~L~~~~~g~~~~~~L~~Ye~~R~~~~~~~~~~~ 349 (349)
T pfam01494 314 LAWKLAAVLRGTAGEALLDTYEAERRPVAWAVVDFA 349 (349)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999997499988999999999999999998509