RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding
protein [Candidatus Liberibacter asiaticus str. psy62]
(380 letters)
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 221 bits (564), Expect = 3e-58
Identities = 105/390 (26%), Positives = 179/390 (45%), Gaps = 17/390 (4%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
+I GAG++GL+ A L RG ++EK +LS+ G G+Q++PNA R L+R+G+ D+L
Sbjct: 6 LIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSG 65
Query: 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120
+ P+ G + L + +R W Y V R LQ LL+ + P +
Sbjct: 66 TGVTPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEI 125
Query: 121 HLSTHITHPDCTQIS-KINNQKPD--------LLVGADGLNSNIRHYIDTQPITFSGDVV 171
L +T T S + + L+ DG+ S +R FSG +
Sbjct: 126 KLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFSKARFSGHIA 185
Query: 172 LRCLIPQNNAPE-----FIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDIS 226
R + + P + ++V+ + G +H + YP++ N V ++ ++
Sbjct: 186 WRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVW 245
Query: 227 FLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAH 286
+ H + +W++ ++Q++ I++ +PLFE + + +GDA+H
Sbjct: 246 SKTGDKAHLKSIYA---DWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASH 302
Query: 287 TLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHM 346
+ PFAAQGA MAIEDA AL+ L A + + VR R+ + R +LN+ +H
Sbjct: 303 AVTPFAAQGAAMAIEDAAALAEALDSDDQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHA 362
Query: 347 HRPASLFRNAGLRLGIHKPLHKSLDWIYQY 376
+L RN + + K LDW+Y Y
Sbjct: 363 TGIFALGRNMLFAIRSPESFLKDLDWLYGY 392
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 169 bits (429), Expect = 1e-42
Identities = 104/400 (26%), Positives = 174/400 (43%), Gaps = 37/400 (9%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
+I+G GI GL A +L +GI+ +LE+ ++ + G GIQ+ PNA L +G+ +
Sbjct: 8 LIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQ 67
Query: 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120
+ + +E+ R R +G Y V+ R + LL + PL
Sbjct: 68 RAVFTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEF 127
Query: 121 HLSTHIT--HPDCTQISKINNQ----KPDLLVGADGLNSNIR-HYIDTQPITFSGDVVLR 173
STH+ D ++ + Q D L+G DG+ S +R + P +G VV R
Sbjct: 128 RTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGDAP-RVTGHVVYR 186
Query: 174 CLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEI 233
+I ++ PE + + ++ GP HLV YPLR N+V ++F R +
Sbjct: 187 AVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLV----------VTFHSREQ- 235
Query: 234 HKEWFVKHLTNWHQEII-----------QLILQINDTHLYPLFECE-CKHWHNKKNAVLI 281
+EW VK + +E++ Q++ + + + E W + L+
Sbjct: 236 -EEWGVKDGSK--EEVLSYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGR-VTLL 291
Query: 282 GDAAHTLLPFAAQGANMAIEDAYALSYLLGK--KTIPAAISAYQKVRAVRVKRIRYRTKL 339
GDAAH + + AQGA MA+EDA L L AA + Y+ VR R R+ +
Sbjct: 292 GDAAHPMTQYMAQGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPRTARVVLSARE 351
Query: 340 NQLLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQYKIP 379
++H RN + + + +L+W+Y +K
Sbjct: 352 MGRIYHAKGVERQVRNLLWKGRTQEQFYDALEWLYGWKED 391
>gnl|CDD|180727 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 127 bits (321), Expect = 5e-30
Identities = 96/363 (26%), Positives = 148/363 (40%), Gaps = 62/363 (17%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
I+G GI GL+ A +L GI ++E + G GI + NA R L+ +G+LD+ +
Sbjct: 9 IVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEA 68
Query: 62 WIEPEDFVFR--SGSTLKELS--RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL 117
+ G+ L EL R + + GI R L +IL + +
Sbjct: 69 GFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGG--GIM----RPALARILADAAR-AAG 121
Query: 118 ARLHLSTHITHPD---------CTQISKINNQKPDLLVGADGLNSNIRHYI---DTQPIT 165
A + L T +T + + + + DL+VGADGL S +R + + +P
Sbjct: 122 ADVRLGTTVTAIEQDDDGVTVTFSDGTT---GRYDLVVGADGLYSKVRSLVFPDEPEP-E 177
Query: 166 FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTY-PLREDNTINM-VFVSSKHTLK 223
++G V R ++P+ E + + + PL ED M +FV+
Sbjct: 178 YTGQGVWRAVLPR--PAEVDRS----LMYLGPTTKAGVVPLSED---LMYLFVTEPRP-- 226
Query: 224 DISFLKRSEIHKEWFVKHLTNW-----HQEIIQLILQINDTH--LYPLFECECKH----- 271
I + L + +L QI D +Y E
Sbjct: 227 -----DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLE---TLLVPAP 278
Query: 272 WHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKK-TIPAAISAYQKVRAVRV 330
WH + VLIGDAAH P AQGA MAIEDA L+ L + ++ AA+ AY R R
Sbjct: 279 WH-RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARHDSLEAALQAYYARRWERC 337
Query: 331 KRI 333
+ +
Sbjct: 338 RMV 340
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 109 bits (274), Expect = 1e-24
Identities = 84/396 (21%), Positives = 154/396 (38%), Gaps = 46/396 (11%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
IIGAGI GLT AA L +G + V EK + + + G GI I N + L + +++
Sbjct: 4 AIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKN 63
Query: 61 IWIEPEDFVFRS--GSTLKELSR-FSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL 117
G+ L ++ + N + + R TL I+ ++++ +
Sbjct: 64 AGQILSTMNLLDDKGTLLNKVKLKSNTLNVT----------LHRQTLIDIIKSYVKEDAI 113
Query: 118 ARLHLSTHITHPDCTQISKINNQ---KPDLLVGADGLNSNIRHYIDTQP-ITFSGDVVLR 173
T I + + DL +GADG++S +R ++ + + G R
Sbjct: 114 FTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFR 173
Query: 174 CLIPQ---NNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230
LI ++ FG PL + + +++K +D +
Sbjct: 174 GLIDDIDLKLPDCAKEYWGTKGRFG------IVPLLNNQAYWFITINAKE--RDPKY--- 222
Query: 231 SEIHKEWFVKHLTNWHQEIIQLILQINDTH--------LYPLFECECKHWHNKKNAVLIG 282
S K + ++ E+ +++ + ++T L PL K + VL+G
Sbjct: 223 SSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPL-----KSFVY-GRIVLLG 276
Query: 283 DAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRT-KLNQ 341
DAAH P QGA A+EDA L+ L A+ Y K+R ++ R+ K+ +
Sbjct: 277 DAAHATTPNMGQGAGQAMEDAIVLANCLNAYDFEKALQRYDKIRVKHTAKVIKRSRKIGK 336
Query: 342 LLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQYK 377
+ + RN ++ + ++Y+ K
Sbjct: 337 IAQIESKLLVALRNRVMKRMPNALAAGQTKFLYKSK 372
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members of
this protein family are salicylate 1-monooxygenase, also
called salicylate hydroxylase. This enzyme converts
salicylate to catechol, which is a common intermediate
in the degradation of a number of aromatic compounds
(phenol, toluene, benzoate, etc.). The gene for this
protein may occur in catechol degradation genes, such as
those of the meta-cleavage pathway.
Length = 414
Score = 109 bits (274), Expect = 1e-24
Identities = 102/415 (24%), Positives = 166/415 (40%), Gaps = 58/415 (13%)
Query: 2 IIGAGISGLTLAASL-GHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQ--- 57
IIG GI+G+ LA +L H + + E + G G+ NA R + +G+ +
Sbjct: 5 IIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQ 64
Query: 58 --------LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILL 109
+DIW E +R+GS L +++ V R LL
Sbjct: 65 VADSTPAPWQDIWFE-----WRNGSDASYLGATIAPGVGQSS-------VHRADFLDALL 112
Query: 110 NHI-QTQPLARLHLSTHITHPDCTQISKINNQ--KPDLLVGADGLNSNIRHYI------D 160
H+ + + + Q+ + + DLL+GADG+ S +R Y+
Sbjct: 113 KHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQA 172
Query: 161 TQPITFSGDVVLRCLIPQNNAPEFIDFQSVN--------IFFGPDSHLVTYPLREDNTIN 212
FSG R L+ E ++ ++ G D H++T+P+R+ IN
Sbjct: 173 PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLIN 232
Query: 213 MV-FVSSKHTLK-----DISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFE 266
+V F+S + K D +++ E + + W L+ I L+ L +
Sbjct: 233 VVAFISDRSQPKPTWPSDTPWVR--EATQREMLDAFAGWGDAARALLECIPAPTLWALHD 290
Query: 267 CECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK-----KTIPAAISA 321
+ LIGDAAH +LP GA +EDAY L+ LLG +PA + A
Sbjct: 291 LAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEA 350
Query: 322 YQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQY 376
Y VR R R++ ++ L+ + PA LG H L DW++ +
Sbjct: 351 YDDVRRPRACRVQRTSREAGELYELRDPAVGADEE--LLGAH--LATRFDWLWNH 401
>gnl|CDD|162642 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4, ) and
UbiF (which acts at position 5). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF.
Length = 385
Score = 106 bits (268), Expect = 8e-24
Identities = 105/401 (26%), Positives = 159/401 (39%), Gaps = 58/401 (14%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKD--QLSDSGFGIQ---ISPNASRILKRIGILD 56
I+G G+ GL LA +L G++ ++E + GF + +S + R+L+++G+ D
Sbjct: 4 IVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWD 63
Query: 57 QLEDIWIEP-ED-FVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQT 114
++E +P D V GS F G Y VV+ LQ+ L +Q
Sbjct: 64 KIEPDRAQPIRDIHVSDGGSFGA--LHFDADEIGLEALG--Y-VVENRVLQQALWERLQE 118
Query: 115 QPLARLH----LSTHITHPDCTQISKINNQ--KPDLLVGADGLNSNIRH--YIDTQ--PI 164
P L + H D +++ + Q + LLVGADG NS +R I T
Sbjct: 119 YPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDY 178
Query: 165 TFSGDV-VLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKH--- 220
S V ++ P ++ F P L PL DN ++V+
Sbjct: 179 GQSAVVANVKHERPHQG----TAWE----RFTPTGPLALLPL-PDNRSSLVWTLPPEEAE 229
Query: 221 TLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHN--KKNA 278
L +S E F+ L + I + + H +PL H
Sbjct: 230 RLLALSD--------EEFLAELQRAFGSRLGAITLVGERHAFPL---SLTHAKRYVAPRL 278
Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK-----KTI--PAAISAYQKVRAV-RV 330
LIGDAAHT+ P A QG N+ + D AL+ +L + I P + Y++ R
Sbjct: 279 ALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNA 338
Query: 331 KRIRYRTKLNQLLFHMH-RPASLFRNAGLRLGIHKPLHKSL 370
+ LN+ LF P L RN GLRL P K+
Sbjct: 339 AMLGATDGLNR-LFSNDFPPLRLLRNLGLRLLNLLPPLKNF 378
>gnl|CDD|181023 PRK07538, PRK07538, hypothetical protein; Provisional.
Length = 413
Score = 94.6 bits (236), Expect = 4e-20
Identities = 95/370 (25%), Positives = 153/370 (41%), Gaps = 71/370 (19%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
I G GI GLTLA +L RGI+ V E +L G GI + P+A R L +G+LD L+ I
Sbjct: 5 IAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAI 64
Query: 62 WIEPEDFVF--RSGSTLKELSRFSCKNYS--RNNWGGIYGV----VKRHTLQKILLN--- 110
I + + R G + +S R G Y + R LQ +LL+
Sbjct: 65 GIRTRELAYFNRHGQRI----------WSEPRGLAAG-YDWPQYSIHRGELQMLLLDAVR 113
Query: 111 ------HIQT-QPLARLHLSTHIT--HPDCTQISKINNQKPDLLVGADGLNSNIRH--YI 159
++T + +T + + + D+L+GADG++S +R Y
Sbjct: 114 ERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYP 173
Query: 160 DTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTY----PLREDNTINMVF 215
D P ++G ++ R + AP F+ +S+ + D LV Y P+ D + +
Sbjct: 174 DEGPPRWNGVMMWRGVTE---APPFLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINW 230
Query: 216 VSSKHTLKDISFLKRS---EIHKEWFVKHLTNWHQEII---------QLILQINDTHLYP 263
V+ + + E F+ H +W + + + I + YP
Sbjct: 231 VAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYE------YP 284
Query: 264 LFECEC-----KHW-HNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSY-LLGKKTIP 316
+ W + L+GDAAH + P + GA+ AI DA AL+ L
Sbjct: 285 M----VDRDPLPRWTRGR--VTLLGDAAHPMYPVGSNGASQAILDARALADALAAHGDPE 338
Query: 317 AAISAYQKVR 326
AA++AY+ R
Sbjct: 339 AALAAYEAER 348
>gnl|CDD|162640 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype.
Length = 382
Score = 90.8 bits (226), Expect = 5e-19
Identities = 90/378 (23%), Positives = 149/378 (39%), Gaps = 35/378 (9%)
Query: 2 IIGAGISGLTLAASLGHRG-IQSCVLEKKD----QLSDSGFGIQISPNASRILKRIGILD 56
I+G G+ GL+LA +L G I+ ++E Q + +S + +IL+++G+
Sbjct: 4 IVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWP 63
Query: 57 QLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQP 116
+L P + S + + G Y VV+ L + LL+ +
Sbjct: 64 KLAPF-ATPILDIHVSDQGHFGATHLRASEFGLPALG--Y-VVELADLGQALLSRLALLT 119
Query: 117 LARLH----LSTHITHPDCTQISKINNQ--KPDLLVGADGLNSNIRH--YIDTQPITFSG 168
+L+ I + D +++ N Q + LL+ ADG NS +R I T+ +
Sbjct: 120 NIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDY-N 178
Query: 169 DVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228
L I + F+ F P L PL+++ ++V+ I+ L
Sbjct: 179 QTALIANIRHEQPHQGCAFER----FTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANL 234
Query: 229 KRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPL-FECECKHWHNKKNAVLIGDAAHT 287
+E F+ L + I Q+ + YPL H H + VLIG+AA T
Sbjct: 235 PDAE-----FLAELQQAFGWRLGKITQVGERKTYPLKLRIAETHVHPR--VVLIGNAAQT 287
Query: 288 LLPFAAQGANMAIEDAYALSYLLGKKTIP----AAISAYQKVRAV-RVKRIRYRTKLNQL 342
L P A QG N+ + D L+ +L I A + Y + R + I LN+L
Sbjct: 288 LHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRL 347
Query: 343 LFHMHRPASLFRNAGLRL 360
+ RN GL
Sbjct: 348 FSNHIPLLRALRNLGLLA 365
>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed.
Length = 388
Score = 74.6 bits (183), Expect = 4e-14
Identities = 85/386 (22%), Positives = 147/386 (38%), Gaps = 53/386 (13%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
+I G+GI+G+ LA LG RG V+E+ + + P+ +++ +G+LD
Sbjct: 9 LINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDD--- 65
Query: 61 IWIEPEDFVFRSGSTLK-ELSRFSCK------NYSRNNWGGIYGVVKRHTLQKILLNHIQ 113
VF +G + + + K +Y + G + ++ L+++LL +
Sbjct: 66 --------VFAAGGLRRDAMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLD 117
Query: 114 TQPLARLHLSTHITH--------PDCTQISKINNQKPDLLVGADGLNSNIRHYI------ 159
P RL T I +S P +LVGADG S IR +
Sbjct: 118 GLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAE 177
Query: 160 ---DTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFV 216
P+ F + + N ++D +F YP+ + T +V
Sbjct: 178 RVPYATPMAFGTIALTDSVRECNRL--YVDSNQGLAYF--------YPIGDQAT-RLVVS 226
Query: 217 SSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKK 276
++ + + + + + I L PL +H K+
Sbjct: 227 FPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYH-KR 285
Query: 277 NAVLIGDAAHTLLPFAAQGANMAIEDAYALS-----YLLGKKTIPAAISAYQKVR-AVRV 330
N VL+GDAAH++ P QG N+AIEDA L +L G+ + A+ ++++R V
Sbjct: 286 NVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNE 345
Query: 331 KRIRYRTKLNQLLFHMHRPASLFRNA 356
I Y L + FR+
Sbjct: 346 AVISYGHALATTYHDRAALVANFRSQ 371
>gnl|CDD|168408 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 74.3 bits (183), Expect = 5e-14
Identities = 79/370 (21%), Positives = 121/370 (32%), Gaps = 105/370 (28%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNAS----RI---LKRIGI 54
I+G G GL LA LG RG+ S ++E+KD G +P A+ R +R+GI
Sbjct: 12 IVGGGPVGLALALDLGRRGVDSILVERKD-------GTAFNPKANTTSARSMEHFRRLGI 64
Query: 55 LDQLEDIWIEPEDF----VFRSGSTLKELSRFSCKNYSR-------NNWGGIYGVVKRHT 103
D++ + P D+ + + T EL+RF + S G + +
Sbjct: 65 ADEVRSAGL-PVDYPTDIAYFTRLTGYELARF--RLPSAREAITPVGGPDGSWPSPELPH 121
Query: 104 ------LQKILLNHIQTQPLARLHL--------------STHITHPDCTQISKINNQKPD 143
L+ ILL H QP L + + D + I + D
Sbjct: 122 RIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTI---RAD 178
Query: 144 LLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQN---NAPEF---IDFQSVN--IFFG 195
LVG DG S +R + I++ G L+ + AP + F
Sbjct: 179 YLVGCDGARSAVRRSLG---ISYEGTSGLQR--DLSIYIRAPGLAALVGHDPAWMYWLFN 233
Query: 196 PDSHLVTYPLREDNTINMVFVSSKHTLKDI---SFLKRSEIHKEWFVKHLTNWHQEIIQL 252
PD V I+ +D L+ E + +
Sbjct: 234 PDRRGVLVA------ID---------GRDEWLFHQLRGGEDEFTIDDVDARAF------V 272
Query: 253 ILQINDTHLYPLFECE---CKHWH---------NKKNAVLIGDAAHTLLPFAAQGANMAI 300
+ + + E W + L GDAAH P G N I
Sbjct: 273 RRGVGED-----IDYEVLSVVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGI 327
Query: 301 EDAYALSYLL 310
DA L++ L
Sbjct: 328 GDAVNLAWKL 337
>gnl|CDD|168629 PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 374
Score = 73.0 bits (179), Expect = 1e-13
Identities = 91/341 (26%), Positives = 145/341 (42%), Gaps = 40/341 (11%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG----IQISPNASRILKRIGILD 56
+I+G G+SG+ A S +GI++ + E K S F ++P++ L I I +
Sbjct: 5 VILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWE 64
Query: 57 QLEDIWIEPEDF--VFRSGSTLKELSRFSCKNYSRNNWGGIYG-VVKRHTLQKILLNHIQ 113
+LE E +D V S + +L RN+ + G VVK +KILL+ I
Sbjct: 65 ELEKFVAEMQDIYVVDNKASEILDL---------RNDADAVLGYVVKNSDFKKILLSKIT 115
Query: 114 TQPLARL----HLSTHITHPDCTQISKINNQ-KPDLLVGADGLNSNIRHYIDTQPITFSG 168
PL L I+H D + I + Q K +LL+ DG NS +R + I
Sbjct: 116 NNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANSKVRSHYFANEIEKPY 175
Query: 169 DVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228
L I E + F P PL++ ++++ +S I L
Sbjct: 176 QTALTFNIKHEKPHENCAMEH----FLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNL 231
Query: 229 KRSEIHKEWFVKHLT--NWHQEIIQLILQINDTHLYPL-FECECKHWHNKKNAVLIGDAA 285
E V+ LT N + ++ + ++ +PL +++HN+ VLI D A
Sbjct: 232 PVEE------VRFLTQRNAGNSLGKITID-SEISSFPLKARIANRYFHNR--IVLIADTA 282
Query: 286 HTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVR 326
HT+ P A QG N I+D LS ++ + YQK+R
Sbjct: 283 HTVHPLAGQGLNQGIKDIEILSMIVSNN---GTLQEYQKLR 320
>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional.
Length = 391
Score = 69.8 bits (171), Expect = 1e-12
Identities = 69/318 (21%), Positives = 131/318 (41%), Gaps = 24/318 (7%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
I GAGI+G TLA L G + ++E+ +L G+ + + KR+GI DQL +
Sbjct: 5 ISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREA 64
Query: 62 W--IEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLAR 119
IE V T + + + ++ R G + + R L + I Q
Sbjct: 65 GYQIEHVRSV---DPTGRRKADLNVDSFRRMV-GDDFTSLPRGDLAAAIYTAIDGQ--VE 118
Query: 120 LHLSTHIT----HPD--CTQISKINNQKPDLLVGADGLNSNIRHYI---DTQPITFSGDV 170
I H D + + DL++GADGL+S++R + + + G
Sbjct: 119 TIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCK 178
Query: 171 VLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230
V C++ P D ++ ++ + LR D T+ + ++H ++ +
Sbjct: 179 VAACVV-DGYRPR--DERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEE 235
Query: 231 SEIHKEWFVKHLTNWH-QEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLL 289
++ ++ F W +I+ + + D + + + W ++ L+GDAA
Sbjct: 236 KQLLRDQFGD--VGWETPDILAALDDVEDLYFDVVSQIRMDRW-SRGRVALVGDAAACPS 292
Query: 290 PFAAQGANMAIEDAYALS 307
+G+ +AI +AY L+
Sbjct: 293 LLGGEGSGLAITEAYVLA 310
>gnl|CDD|162643 TIGR01989, COQ6, Ubiquinone biosynthesis mono0xygenase COQ6. This
model represents the monooxygenase responsible for the
4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 62.1 bits (151), Expect = 2e-10
Identities = 81/383 (21%), Positives = 125/383 (32%), Gaps = 90/383 (23%)
Query: 2 IIGAGISGLTLAASLGH-----------------RGIQSCVLEKKDQLSDSGFGIQISPN 44
I+G G GL LAA+LG+ ++S EK D + I+P
Sbjct: 5 IVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRV-SSITPA 63
Query: 45 ASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTL 104
+ K+IG D ++ I+P + L RF N + + +++ +
Sbjct: 64 SISFFKKIGAWDHIQSDRIQPFGRMQVWDGCSLALIRFDRDNGKED----MACIIENDNI 119
Query: 105 QKILLNHIQTQPLARLHLSTHITHPDCT---------------QISKINNQKPDLLVGAD 149
Q L N +Q + + T +S LL+GAD
Sbjct: 120 QNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGAD 179
Query: 150 GLNSNIRHYIDTQPITFSGD---VV--LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYP 204
G NSN+R + ++ + VV L+ N + F GP + L P
Sbjct: 180 GSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPT----GPIALL---P 232
Query: 205 LREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTN-----WHQ---------EII 250
L DN +V+ +S L + E FV L + +
Sbjct: 233 L-PDNNSTLVWSTSPEEALR---LLS--LPPEDFVDALNAAFDLGYSDHPYSYLLDYAME 286
Query: 251 QLILQI-------NDTHLYP------------LFECECKHWHN--KKNAVLIGDAAHTLL 289
+L I P F H K L+GDAAH +
Sbjct: 287 KLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVH 346
Query: 290 PFAAQGANMAIEDAYALSYLLGK 312
P A QG N+ D +L L +
Sbjct: 347 PLAGQGVNLGFGDVASLVKALAE 369
>gnl|CDD|181326 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
Length = 765
Score = 61.9 bits (151), Expect = 2e-10
Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 47/218 (21%)
Query: 143 DLLVGADGLNSNIR-HYIDTQPITFSGDVVLRCLIPQNNAPEFI------DFQSVNIFFG 195
DL++ +DGLNS IR Y DT F D+ R + F+ F + F
Sbjct: 131 DLVIASDGLNSRIRTRYADT----FQPDIDTR----RCR---FVWLGTHKVFDAFTFAFE 179
Query: 196 PDSH----LVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIH-----KEWFVKHLTNWH 246
H Y +D+T + + + + + S+ ++ F +L + H
Sbjct: 180 ETEHGWFQAHAYRF-DDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYL-DGH 237
Query: 247 QEIIQLILQINDTHL-------YPLFECE-CKHWHNKKNAVLIGDAAHTLLPFA-AQGAN 297
L N +HL +P CE HW+ + VL+GDAAHT F+ G
Sbjct: 238 P------LMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHT-AHFSIGSGTK 290
Query: 298 MAIEDAYALSYLLGK--KTIPAAISAYQKVRAVRVKRI 333
+A+EDA L+ L + +PAA++AY++ R V V RI
Sbjct: 291 LALEDAIELARCLHEHPGDLPAALAAYEEERRVEVLRI 328
>gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 59.8 bits (145), Expect = 1e-09
Identities = 87/332 (26%), Positives = 142/332 (42%), Gaps = 53/332 (15%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGI-------QISPNASRILKRIGI 54
IIG G+ GL LAA+L ++ V+E QL + +S ++ IL+ +G
Sbjct: 9 IIGGGMVGLALAAALKESDLRIAVIE--GQLPEEALNELPDVRVSALSRSSEHILRNLGA 66
Query: 55 LDQLEDIWIEPEDF--VFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112
+E P V+ S + F ++ ++ + G I V+ +Q LL +
Sbjct: 67 WQGIEARRAAPYIAMEVWEQDSFAR--IEFDAESMAQPDLGHI---VENRVIQLALLEQV 121
Query: 113 QTQPLARLHLSTHITHPDCTQIS--------KINNQK---PDLLVGADGLNSNIRHYIDT 161
Q Q L + C I+ ++N + L+VGADG NS +R +D
Sbjct: 122 QKQDNVTLLMPAR-----CQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDI 176
Query: 162 QPIT-----FSGDVV-LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVF 215
P+T S V +R + P N+ I F P L P+ E N ++V+
Sbjct: 177 -PLTHWDYGHSALVANVRTVDPHNSVARQI--------FTPQGPLAFLPMSEPNMSSIVW 227
Query: 216 VSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNK 275
S L+ + L S+ E F K LT + L + + +PL + + +
Sbjct: 228 --STEPLRAEALLAMSD---EQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYARDF-VR 281
Query: 276 KNAVLIGDAAHTLLPFAAQGANMAIEDAYALS 307
+ L+GDAAHT+ P A QG N+ + DA +L+
Sbjct: 282 ERVALVGDAAHTIHPLAGQGVNLGLLDAASLA 313
>gnl|CDD|180902 PRK07236, PRK07236, hypothetical protein; Provisional.
Length = 386
Score = 57.6 bits (140), Expect = 4e-09
Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 46/224 (20%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK-DQLSDSGFGIQISPNASRILKRIGILDQLED 60
+IG + GL A L G V E+ +L G GI + P R L G+ D
Sbjct: 11 VIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGV-ALPAD 69
Query: 61 IWIEPEDFVF--RSGSTLKELS---RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQ 115
I + + ++ R G ++ + +W +Y ++
Sbjct: 70 IGVPSRERIYLDRDGRVVQRRPMPQTQT-------SWNVLYRALRAAF------------ 110
Query: 116 PLARLHLSTHIT--HPDCTQIS-KINN---QKPDLLVGADGLNSNIRHYI--DTQPITFS 167
P R HL + D +++ + + + DLLVGADG S +R + D +P T++
Sbjct: 111 PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDVRP-TYA 169
Query: 168 GDVVLRCLIPQNNAPEFIDFQSVNIFF-------GPDSHLVTYP 204
G V R L+ + P ++ GP SH++ YP
Sbjct: 170 GYVAWRGLVDEAALPP----EARAALRDRFTFQLGPGSHILGYP 209
Score = 38.0 bits (89), Expect = 0.004
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 278 AVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKT--IPAAISAYQKVRAVRVKRI 333
L+GDAA P A G A DA AL+ L I AA++A++ R I
Sbjct: 307 VALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAAGDIDAALAAWEAERLAVGAAI 364
>gnl|CDD|180451 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 54.1 bits (131), Expect = 6e-08
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 25/203 (12%)
Query: 143 DLLVGADGLNSNIRHY--IDTQPITFSGDVV-LRCLIPQNNAPEFIDFQSVNIFFGPDSH 199
DL+VGADG +S +R ++ + DV+ R +P+ P+ D +S+ FGP
Sbjct: 159 DLVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPR--EPD--DPESLMGRFGPGQG 212
Query: 200 LVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTN---WHQEIIQLILQI 256
L+ R D +V K L+ + + E F + + + + +
Sbjct: 213 LIMID-RGD-YWQCGYVIPKGGYAA---LRAAGL--EAFRERVAELAPELADRVAELKSW 265
Query: 257 NDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKK--- 313
+D L + + WH + + IGDAAH + P G N+AI+DA A + +L +
Sbjct: 266 DDVKLLDVRVDRLRRWH-RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRR 324
Query: 314 --TIPAAISAYQKVRAVRVKRIR 334
++A Q+ R + +
Sbjct: 325 GRVSDRDLAAVQRRREFPTRVTQ 347
Score = 41.0 bits (97), Expect = 5e-04
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEK-KDQLSDSGF-GIQISPNASRILKRIGILDQLE 59
I+G G +G+ L L G+ VLEK D L D F G + P+ ++ +G+L++
Sbjct: 11 IVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRD--FRGDTVHPSTLELMDELGLLERFL 68
Query: 60 DI 61
++
Sbjct: 69 EL 70
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 54.2 bits (131), Expect = 6e-08
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAI------SAYQKVRAVRVKRI 333
L+GDAAH + P A QG N+ + D AL+ +L + + Y++ R + +
Sbjct: 284 LVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILAL 343
Query: 334 RYRTKLNQLLFHMHRPASLF-RNAGLRLGIHKPLHKSL 370
+ T Q LF + P + + RNAG+ L PL K
Sbjct: 344 QVATDGLQRLFALPGPLARWLRNAGMALVGALPLVKRW 381
Score = 31.8 bits (73), Expect = 0.32
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL--SDSGFGIQI---SPNASRILKRIGILD 56
++G G+ G +LA +L G++ +L + +D + ++ SP++ L+R+G+
Sbjct: 10 VVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQ 69
Query: 57 QLE 59
L+
Sbjct: 70 ALD 72
>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 53.2 bits (128), Expect = 1e-07
Identities = 91/402 (22%), Positives = 152/402 (37%), Gaps = 80/402 (19%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK-----DQLSDSGFGIQ-ISPNASRILKRIGIL 55
++G G+ G A +G V+E + + IS + +L+ +G
Sbjct: 8 VVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAW 67
Query: 56 DQLEDIWIEPEDFVFRSGSTLKE---LSRFSCKNYSRNNWGGIYGVVKRHTLQKIL---- 108
+ + + P ++ T + +RF + + G I V+ +Q L
Sbjct: 68 SSIVAMRVCP----YKRLETWEHPECRTRFHSDELNLDQLGYI---VENRLIQLGLWQQF 120
Query: 109 -----LNHIQTQPLARLHLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQP 163
L + + LA L S + + + ++GADG NS +R
Sbjct: 121 AQYPNLTLMCPEKLADLEFSAEG---NRVTLESGAEIEAKWVIGADGANSQVRQLAGIG- 176
Query: 164 ITFSGDVVLRCLI-------PQNNAPEFIDFQSVNIFF--GPDSHLVTYPLREDNTINMV 214
IT + D C++ PQ + I +Q F GP S L PL N ++V
Sbjct: 177 IT-AWDYRQHCMLINVETEQPQQD----ITWQQ---FTPSGPRSFL---PLC-GNQGSLV 224
Query: 215 FVSSKHTLKDISFLKRSEIHKE---WFVKHLTNWHQEIIQLILQINDTHLYPLFECECKH 271
+ S +K +S + ++ E F L +LQ +PL +
Sbjct: 225 WYDSPKRIKQLSAMNPEQLRSEILRHFPAELGEIK------VLQHGS---FPLTRRHAQQ 275
Query: 272 WHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTI--PAAISAYQKVRAVR 329
+ K N VL+GDAAHT+ P A QG N+ +D L K+ + A+ + Y++ R R
Sbjct: 276 YV-KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDASFARYERRR--R 332
Query: 330 VKRIR--------YRTKLNQLLFHMHRPASLFRNAGLRLGIH 363
+ Y+T N L P RNA L+L +
Sbjct: 333 PDNLLMQTGMDLFYKTFSNSLT-----PLKFVRNAALKLAEN 369
>gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 405
Score = 51.8 bits (124), Expect = 3e-07
Identities = 104/419 (24%), Positives = 154/419 (36%), Gaps = 86/419 (20%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCV-----LEKKDQLSDSGFGIQISP--NAS-RILKRI 52
+I+GAG+ G LA +L G++ + L K + F ++S AS RIL+R+
Sbjct: 6 LIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL 65
Query: 53 GILDQLEDIWIEP-EDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNH 111
G D + P + GS ++ FS + G I V+ +Q LL
Sbjct: 66 GAWDGIAARRASPYSEMQVWDGSGTGQI-HFSAASVHAEVLGHI---VENRVVQDALLER 121
Query: 112 IQTQ-----PLARLHLSTH------ITHPDCTQISKINNQKPDLLVGADGLNSNIRHYID 160
+ ARL +T D Q+ + L+V ADG NS +R
Sbjct: 122 LHDSDIGLLANARLEQMRRSGDDWLLTLADGRQL------RAPLVVAADGANSAVRRLAG 175
Query: 161 TQPITFSGDVV-------LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNT--- 210
T D + +RC P +Q F D L PL D
Sbjct: 176 CA--TREWDYLHHAIVTSVRCSEPHRATA----WQR----FTDDGPLAFLPLERDGDEHW 225
Query: 211 INMVFVSSKH------TLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPL 264
++V+ ++ L D +F E E + +L + PL
Sbjct: 226 CSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGE-----------VLSADPRLCVPL 274
Query: 265 FECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQK 324
+ K + A LIGDAAHT+ P A QG N+ DA L+ +L A ++
Sbjct: 275 RQRHAKRYVEPGLA-LIGDAAHTIHPLAGQGVNLGFLDAAVLAEVL-----LHAAERGER 328
Query: 325 VRAVRV--KRIRYRTKLN----------QLLFHMHR-PASLFRNAGLRLGIHKPLHKSL 370
+ VRV + R R N + LF P RN GL+L P K+L
Sbjct: 329 LADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKAL 387
>gnl|CDD|180449 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 538
Score = 50.3 bits (121), Expect = 8e-07
Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 34/181 (18%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
I+GAG GLTLA LG G++ VLE+ L D + I A R+L+ IG+ D++
Sbjct: 15 IVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPH 74
Query: 62 WIEPEDFVFRS--GSTLKELSRFSCKNYSRNNWGGIYGVVKR-----HTLQKILLNHIQT 114
F G L E++R S G +G +R L+ +L +
Sbjct: 75 TTPNHGMRFLDAKGRCLAEIARPS---------TGEFGWPRRNAFHQPLLEAVLRAGLAR 125
Query: 115 QPLARL--------------HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYID 160
P R+ ++ +T D Q + + +VG DG NS +R +
Sbjct: 126 FPHVRVRFGHEVTALTQDDDGVTVTLTDAD-GQRETV---RARYVVGCDGANSFVRRTLG 181
Query: 161 T 161
Sbjct: 182 V 182
Score = 40.7 bits (96), Expect = 7e-04
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLL 310
L GDAAH + PFA QG N I DA L++ L
Sbjct: 290 LAGDAAHLMPPFAGQGMNSGIRDAANLAWKL 320
>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated.
Length = 372
Score = 49.2 bits (117), Expect = 2e-06
Identities = 70/325 (21%), Positives = 130/325 (40%), Gaps = 34/325 (10%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
++ GA ++G A LG G ++E+ L G I + A +L+R+G+L ++
Sbjct: 5 VVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQE 64
Query: 61 --IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGV---VKRHTLQKILLNHIQ-- 113
I FV R G+ EL R S G + + R L ++L Q
Sbjct: 65 HKTRIRGASFVDRDGN---ELFR---DTESTPTGGPVNSPDIELLRDDLVELLYGATQPS 118
Query: 114 TQPLARLHLSTHITHPDCTQIS--KINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVV 171
+ L +ST D +++ + ++ DL++GADGL+SN+R + F +
Sbjct: 119 VEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLG 178
Query: 172 LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNT---INMVFVSS------KHTL 222
I P F++ + DS + +NT + F+ + + T
Sbjct: 179 THAAI--FTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYRDTE 236
Query: 223 KDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIG 282
+ L+R W +++ + D + + + W ++ L+G
Sbjct: 237 AQFAELQRRMAEDGWV-------RAQLLHYMRSAPDFYFDEMSQILMDRW-SRGRVALVG 288
Query: 283 DAAHTLLPFAAQGANMAIEDAYALS 307
DA + P + QG ++A+ AY L+
Sbjct: 289 DAGYCCSPLSGQGTSVALLGAYILA 313
>gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 48.4 bits (116), Expect = 3e-06
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK--DQLSDSGFG---IQISPNASRILKRIGILD 56
++GAG +GL+ A SL G++ ++E++ L+D F I ++ + IL+R+G D
Sbjct: 8 VVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWD 67
Query: 57 QLEDIWIEP-EDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQ 115
++ + I P D +G + L F + + G + V H +++ + Q
Sbjct: 68 RIPEDEISPLRDAKVLNGRSPFAL-TFDARGRGADALGYL---VPNHLIRRAAYEAVSQQ 123
Query: 116 PLARLHLSTHITH----PDCTQISKINNQK--PDLLVGADGLNSNIR 156
L T +T D Q++ N ++ LLV AD S R
Sbjct: 124 DGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATR 170
Score = 34.1 bits (79), Expect = 0.065
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 21/120 (17%)
Query: 260 HLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAI 319
H YPL + K+ A LIGDAA + P A G N+ ++ L+ + I AA
Sbjct: 265 HAYPLVAVYAHRFVAKRFA-LIGDAAVGMHPVTAHGFNLGLKGQDILA-----RLILAAA 318
Query: 320 SAYQKVRAVRVKRIRYRTK---LNQLLFHM-----------HRPASLFRNAGLRLGIHKP 365
Q + A + RY K + L+H PA L R A LR P
Sbjct: 319 RRGQDIGAASLLE-RYERKHRLATRPLYHATNAIAALYTDDRPPARLLRRAVLRAANRFP 377
>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase.
Length = 668
Score = 48.6 bits (115), Expect = 3e-06
Identities = 102/436 (23%), Positives = 161/436 (36%), Gaps = 92/436 (21%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG-----IQISPNASRILKRIGIL 55
++ G GI GL A + +G V EK D + G G IQI NA L
Sbjct: 85 LVAGGGIGGLVFALAAKKKGFDVLVFEK-DLSAIRGEGKYRGPIQIQSNA---------L 134
Query: 56 DQLEDIWIEPEDFVFRSGSTLKE-------------LSRFSCKNYSRNNWGGIYGVVKRH 102
LE I I+ + V +G + +F + + + V+ R
Sbjct: 135 AALEAIDIDVAEQVMEAGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRM 194
Query: 103 TLQKILLNHIQTQPLA-RLHLSTHITHPDCTQISKINNQK--PDLLVGADGLNSNIRHYI 159
TLQ+IL + + ++ D + N Q+ DLLVGADG+ S +R+ +
Sbjct: 195 TLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNL 254
Query: 160 -DTQPITFSGDVVLRCLIPQNNAPEFI--DFQSVN--IFFGPDSHLVT----------YP 204
T+SG C +FI D +SV +F G + V+ Y
Sbjct: 255 FGRSEATYSG---YTCY---TGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYA 308
Query: 205 LREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPL 264
E+ + + +K F EI W L H IL+ + P
Sbjct: 309 FHEEPAGG---ADAPNGMKKRLF----EIFDGWCDNVLDLLHATEEDAILRRDIYDRSPG 361
Query: 265 FECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLG-------KKTIP- 316
F W K L+GD+ H + P QG MAIED++ L+ L + P
Sbjct: 362 FT-----W-GKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPV 415
Query: 317 ---AAISAYQKVRAVRVKRIRYRTKLNQLLFHMHR--------PASL---FR-----NAG 357
+++ Y++ R +RV I ++ ++ ++ P S FR G
Sbjct: 416 DVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVG 475
Query: 358 LRLGIHKPLHKSLDWI 373
R + + LDW+
Sbjct: 476 GRFFVDIAMPLMLDWV 491
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 46.8 bits (112), Expect = 1e-05
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 275 KKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTI----PAAISAYQKVRAVRV 330
L+G+AAH P AQG N+ + D L ++ + A ++AY + R +
Sbjct: 279 AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDI 338
Query: 331 KRIRYRTK----LNQ-LLFHMHRPASLFRNAGLRL 360
RT LN+ LL P R AGL L
Sbjct: 339 LS---RTASVDLLNRSLLSDF-LPVQDLRAAGLHL 369
Score = 30.6 bits (70), Expect = 0.62
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 2 IIGAGISGLTLAASLGHRG 20
+IG G +GL A +L G
Sbjct: 12 VIGGGPAGLAAAIALARAG 30
>gnl|CDD|180946 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 46.6 bits (111), Expect = 1e-05
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK--DQLSDSGFGIQISPNASRILKRIGILDQLE 59
I+G GI GLTLAA+L G++ ++E + + + G +S ++RI + IG+ +++
Sbjct: 23 IVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKIL 82
Query: 60 DIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIY-GVVKRH-TLQKILLNHIQTQPL 117
I + S + + +F + G G V H L + L +Q+ P
Sbjct: 83 P-QIGKFRQIRLSDADYPGVVKF-----QPTDLGTEALGYVGEHQVLLEALQEFLQSCPN 136
Query: 118 ARLH-----LSTHITHPDCTQISKINNQKP-----DLLVGADGLNSNIR 156
+S D ++ K L+V ADG S IR
Sbjct: 137 ITWLCPAEVVSVE-YQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIR 184
Score = 40.8 bits (96), Expect = 7e-04
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAVRV-KRI-RYR 336
L+GDAAH P QG N+ I DA AL+ + + A + + ++ V KR R+R
Sbjct: 297 ALVGDAAHCCHPVGGQGLNLGIRDAAALA-----QVLQTAHQRGEDIGSLAVLKRYERWR 351
Query: 337 TKLNQL----------LFHMHR-PASLFRNAGLRLGIHKPLHKSL 370
+ N L LF P + R GL L H P K L
Sbjct: 352 KRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRL 396
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 46.6 bits (111), Expect = 1e-05
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 26/171 (15%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGF----GIQISPNASRILKRIGILDQ 57
IIG G +G LA L + ++ ++KK Q GF G ++P+A + + G L
Sbjct: 6 IIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDG-LTL 63
Query: 58 LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHT----LQKILLNHIQ 113
+D+ P+ F ++ L+R NY R+ + RH L+ ++ ++
Sbjct: 64 PKDVIANPQIFAVKTIDLANSLTR----NYQRSYIN-----IDRHKFDLWLKSLIPASVE 114
Query: 114 TQPLARLHLSTHITHPDCTQISKINNQ-----KPDLLVGADGLNSNIRHYI 159
+ D + + LVGADG NS +R ++
Sbjct: 115 VYHNS--LCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHL 163
>gnl|CDD|181243 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 46.0 bits (110), Expect = 2e-05
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
++GAG GL LA L +G+ +L+ D LS I + + I R+G +++ D
Sbjct: 28 VVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVD 86
Score = 41.0 bits (97), Expect = 5e-04
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 282 GDAAHTLLPFAAQGANMAIEDA----YALSYLLGKKTIPAAISAY--QKVRAVRVKRIRY 335
GDAAH + PF A+GAN I+DA + L+ +L + + + +Y ++ A + IR
Sbjct: 305 GDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAAD-ENIRN 363
Query: 336 RTKLNQLLFHM--HRPAS-LFRNAGLRLGIHKPLHKSL 370
T+ F + P S LFR+A LRL P + L
Sbjct: 364 STRSTD--F-ITPKSPVSRLFRDAVLRLARDHPFARRL 398
>gnl|CDD|162668 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates.
Length = 295
Score = 44.6 bits (106), Expect = 4e-05
Identities = 60/313 (19%), Positives = 112/313 (35%), Gaps = 44/313 (14%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
++GAG +G + A L +G++ +LEKK G +SP R+L+ + + +L
Sbjct: 5 VVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSP---RVLEELDLPLELIVN 61
Query: 62 WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLH 121
+ F +G +++ + V+ R + L Q A L
Sbjct: 62 LVRGARFFSPNGDSVEIPIE-----------TELAYVIDRDAFDEQLAERAQEAG-AELR 109
Query: 122 LSTHITHPDCTQ---------ISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVL 172
L T + D +++GADG S + + + V
Sbjct: 110 LGTTVL--DVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRELGVAA 167
Query: 173 RCLIPQNNAPEFIDFQSVNIFFG----PDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228
R + + DF V ++ P + +P + D T N V V S+ +
Sbjct: 168 RAEVEMPDEEVDEDF--VEVYIDRGISPGGYGWVFP-KGDGTAN-VGVGSRSAEEGEDLK 223
Query: 229 KRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTL 288
K K++ + E +++I P+ + + N +L+GDAA +
Sbjct: 224 K---YLKDFLARRPELKDAETVEVI-----GAPIPIGRPDD--KTVRGNVLLVGDAAGHV 273
Query: 289 LPFAAQGANMAIE 301
P +G A+
Sbjct: 274 KPLTGEGIYYAMR 286
>gnl|CDD|180227 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 42.9 bits (102), Expect = 1e-04
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 253 ILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK 312
I YPL L+G+AA TL P A QG N+ + D +L+ L +
Sbjct: 260 ITHAGKRSAYPLALVTAAQ-QISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQ 318
Query: 313 KTI-------PAAISAYQKVRAV-RVKRIRYRTKLNQLLFHMHRPASLFRNAGL 358
A + YQ+ R R I + L +L + P + RN GL
Sbjct: 319 ALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLVVGRNLGL 372
Score = 31.7 bits (73), Expect = 0.29
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 42/189 (22%)
Query: 1 MIIGAGISGLTLA---ASLGHRGIQSCVLEKKDQLSDS--GF---GIQISPNASRILKRI 52
+I+G G++G TLA + L H G+ ++E SD+ GF I ++ + L R+
Sbjct: 7 IIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL 66
Query: 53 GILDQLEDIWIEPEDFVF-----RSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKI 107
G+ L D P + +G R ++Y G Y VV+ H + +
Sbjct: 67 GVWQALADC-ATPITHIHVSDRGHAGFV-----RLDAEDYGVPALG--Y-VVELHDVGQR 117
Query: 108 LLNHIQTQPLARLHL------------STHITHPDCTQISKINNQKPDLLVGADGLNSNI 155
L + P LH S +T D ++ LLV ADG +S +
Sbjct: 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTG------RLLVAADGSHSAL 171
Query: 156 RHY--IDTQ 162
R ID Q
Sbjct: 172 REALGIDWQ 180
>gnl|CDD|180450 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 43.0 bits (102), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS--GFGIQISPNASRILKRIGILDQL 58
+I+GAG +GLTLA L RG+ ++EK + G GIQ P + +G+LD++
Sbjct: 7 LIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQ--PRTQEVFDDLGVLDRV 64
Score = 39.6 bits (93), Expect = 0.001
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLG 311
L GDAAH P QG N +++DAY L + L
Sbjct: 285 LAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLA 316
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 403
Score = 41.5 bits (98), Expect = 3e-04
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYAL 306
L+GDAAH + P A QG N+ ++D AL
Sbjct: 284 LVGDAAHGIHPIAGQGLNLGLKDVAAL 310
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 41.5 bits (98), Expect = 4e-04
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYAL 306
L+GDAAHT+ P A QG N+ D AL
Sbjct: 284 ALVGDAAHTINPLAGQGVNLGYRDVDAL 311
Score = 28.8 bits (65), Expect = 2.5
Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 22/170 (12%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK-----DQLSDSGFGIQ-ISPNASRILKRIGIL 55
I+G G+ G LA L G VLE D S I IS + +LK +G+
Sbjct: 10 IVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVW 69
Query: 56 DQLEDIWIEPEDFVFRSGSTLKELS---RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112
D ++ + P +R T + + F G Y V R LQ L +
Sbjct: 70 DAVQAMRSHP----YRRLETWEWETAHVVFDAAELKLPELG--YMVENR-VLQLALWQAL 122
Query: 113 QTQPLARL----HLSTHITHPDCTQISKINNQK--PDLLVGADGLNSNIR 156
+ P L L D +++ + ++ L++GADG NS +R
Sbjct: 123 EAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVR 172
>gnl|CDD|180788 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 40.4 bits (95), Expect = 8e-04
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYALSYLL-GKKTIPAAISAYQKVRAV 328
+G+AA TL P A QG N+ + DA+ L+ L P A++ + RA+
Sbjct: 294 AAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGATPLALATFAARRAL 344
>gnl|CDD|179330 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 39.8 bits (94), Expect = 0.001
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
IIG GI+G LA +L RG Q + E +
Sbjct: 265 IIGGGIAGAALALALARRGWQVTLYEADEAP 295
>gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted
to lycopene by desaturation at four (two symmetrical
pairs of) sites. This is achieved by two enzymes (crtP
and crtQ) in cyanobacteria (Gloeobacter being an
exception) and plants, but by a single enzyme in most
other bacteria and in fungi. This single enzyme is
called the bacterial-type phytoene desaturase, or CrtI.
Most members of this family, part of the larger Pfam
family pfam01593, which also contains amino oxidases,
are CrtI itself; it is likely that all members act on
either phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis.
Length = 502
Score = 39.6 bits (93), Expect = 0.001
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ-------LSDSGF 37
+IGAG GL LA L GI V+E++D+ L D GF
Sbjct: 3 VIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGF 45
>gnl|CDD|181197 PRK08013, PRK08013, oxidoreductase; Provisional.
Length = 400
Score = 38.9 bits (91), Expect = 0.002
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYAL 306
L+GDAAHT+ P A QG N+ DA L
Sbjct: 285 ALVGDAAHTIHPLAGQGVNLGFMDAAEL 312
Score = 29.2 bits (66), Expect = 1.9
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 144 LLVGADGLNSNIRHYIDTQPITF 166
L+VGADG NS +R+ D P+TF
Sbjct: 159 LVVGADGANSWLRNKADI-PLTF 180
Score = 28.5 bits (64), Expect = 2.8
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK---DQLSDSGFGIQISP-NAS--RILKRIGIL 55
I G G+ GL +A L G++ VLE++ +D+ +++S NA+ ++L R+G+
Sbjct: 8 IAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVW 67
Query: 56 DQL 58
+
Sbjct: 68 QDI 70
>gnl|CDD|162990 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp.
strain PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria,
where myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed
to myxoxanthophyll.
Length = 492
Score = 38.5 bits (90), Expect = 0.003
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
+IGAGI+GLT AA L RG + +LE+ Q
Sbjct: 6 VIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36
>gnl|CDD|181316 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.
Length = 392
Score = 38.6 bits (91), Expect = 0.003
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 16/58 (27%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNA--SRILKRIGILDQ 57
IIGAG +GL L L GI S VLE++ S RI R G+L+Q
Sbjct: 7 IIGAGPAGLLLGQLLHLAGIDSVVLERR------------SREYVEGRI--RAGVLEQ 50
Score = 35.9 bits (84), Expect = 0.016
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALS 307
L GDAAH + P A+G N+A D L+
Sbjct: 283 LAGDAAHIVPPTGAKGLNLAASDVRYLA 310
>gnl|CDD|179767 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 38.3 bits (90), Expect = 0.003
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG------------IQISPNASRIL 49
I+GAG SGLT A L G++ V E+K LS FG I + A IL
Sbjct: 30 IVGAGPSGLTAAYYLAKAGLKVAVFERK--LS---FGGGMWGGGMLFNKIVVQEEADEIL 84
Query: 50 KRIGI 54
GI
Sbjct: 85 DEFGI 89
>gnl|CDD|180899 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 38.3 bits (90), Expect = 0.004
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
I+G GI+GL A L RG + V E DQL
Sbjct: 4 IVGGGIAGLAAAYRLAKRGHEVTVFEADDQL 34
>gnl|CDD|178222 PLN02612, PLN02612, phytoene desaturase.
Length = 567
Score = 36.7 bits (85), Expect = 0.009
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 19/116 (16%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL--------SDSG----FGIQI----SPN 44
+I GAG++GL+ A L G + +LE +D L + G G+ I PN
Sbjct: 97 VIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPN 156
Query: 45 ASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVK 100
+ +GI D+L+ W E +F + E SRF GI+ +++
Sbjct: 157 VQNLFGELGINDRLQ--WKE-HSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILR 209
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 36.6 bits (85), Expect = 0.012
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL-----SDSGFGIQISPNAS 46
++IG GI+G+ A +L + +LE +D++ +D FG + AS
Sbjct: 4 IVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGAS 54
>gnl|CDD|181140 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 36.6 bits (85), Expect = 0.012
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL----SDSGFGIQISPNASRILKRIGILDQ 57
++G+G +G+ A + HRG+ + V+EK + SG G+ I PN +LKR G+ D
Sbjct: 12 VVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWI-PNNE-VLKRAGVPDT 69
Query: 58 LED 60
E
Sbjct: 70 PEA 72
>gnl|CDD|161797 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model
when searched with a partial length search brings in
proteins with a dinucleotide-binding motif (Rossman
fold) over the initial 40 residues of the model,
including oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae.
Length = 400
Score = 36.4 bits (85), Expect = 0.014
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
IIG G +GL A + G+ +LEK ++
Sbjct: 2 IIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32
>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Validated.
Length = 392
Score = 35.6 bits (82), Expect = 0.019
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 281 IGDAAHTLLPFAAQGANMAIEDAYALSYLL 310
+GDAAH + P A QG N+ + D AL L+
Sbjct: 287 LGDAAHVVHPLAGQGVNLGLRDVAALQQLV 316
>gnl|CDD|181317 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 35.1 bits (81), Expect = 0.027
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQL 58
+IIG G GL LA+ L G+++CV+E+ + + + P IL G+L++
Sbjct: 6 IIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERF 63
Score = 34.3 bits (79), Expect = 0.053
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAA----ISAYQKVRAVRVKRIRY 335
L GDAAH P QG N+ ++DA L + L A + +Y R +
Sbjct: 276 LAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLR 335
Query: 336 RTKLNQLLFHMHRPASLFRN 355
T++ LF RP R+
Sbjct: 336 NTEVQTKLFDFTRPGLALRS 355
>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase.
Members of this family are the enzyme 4-hydroxybenzoate
3-monooxygenase, also called p-hydroxybenzoate
hydroxylase. It converts 4-hydroxybenzoate + NADPH +
molecular oxygen to protocatechuate + NADPH + water. It
contains monooxygenase (pfam01360) and FAD binding
(pfam01494) domains. Pathways that contain this enzyme
include the protocatechuate 4,5-degradation pathway.
Length = 390
Score = 34.7 bits (80), Expect = 0.037
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLL 310
L GDAAH + P A+G N+A D + L L
Sbjct: 283 LAGDAAHIVPPTGAKGLNLAASDVHYLYEAL 313
Score = 31.7 bits (72), Expect = 0.33
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 16/58 (27%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPN--ASRILKRIGILDQ 57
IIGAG SGL L L GI + +LE++ S + RI R G+L+Q
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQ------------SRDYVLGRI--RAGVLEQ 50
>gnl|CDD|183783 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 584
Score = 34.8 bits (80), Expect = 0.042
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD----SGFGIQISPNASRILKRIGILD 56
+++G+G G+T A + RG+ + V+EK SG GI + P A +R G +
Sbjct: 15 LVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWV-PGAP-AQRREGYVP 72
Query: 57 QLEDI 61
ED+
Sbjct: 73 DPEDV 77
>gnl|CDD|185578 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 34.4 bits (79), Expect = 0.048
Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 27/164 (16%)
Query: 191 NIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHL-TNWHQEI 249
+F G +++Y L +DN + ++ +K TL + ++SE E HL N +
Sbjct: 255 TVFLGKTGPILSYRL-DDNELRVLVDYNKPTLPSLE--EQSEWLIEDVAPHLPENMRESF 311
Query: 250 I------QLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDA 303
I + I + + P F K V IGD A+ P G D
Sbjct: 312 IRASKDTKRIRSMPNARYPPAFPS-------IKGYVGIGDHANQRHPLTGGGMTCCFSDC 364
Query: 304 YALSYLLGKKTIPAAISAYQ--------KVRAVRVKRIRYRTKL 339
L+ L I + S Q ++A + R R
Sbjct: 365 IRLAKSL--TGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTH 406
Score = 29.0 bits (65), Expect = 2.1
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS--DSGFGIQISPNASRILKRIGILDQL 58
+I+G I+G LA +L +G + +LE +D S D G + P LK +G+ +
Sbjct: 37 IIVGGSIAGPVLAKALSKQGRKVLMLE-RDLFSKPDRIVGELLQPGGVNALKELGMEECA 95
Query: 59 EDI 61
E I
Sbjct: 96 EGI 98
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 34.3 bits (79), Expect = 0.058
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD----SGFGIQISPNASRILKRIGILD 56
+++G+G G+ A + G++ ++EK+D++ SG + + PN + ++K G+ D
Sbjct: 10 VVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWL-PN-NPLMKAAGVPD 67
Query: 57 QLED 60
ED
Sbjct: 68 SHED 71
>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase.
Length = 514
Score = 34.1 bits (78), Expect = 0.069
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
+I+GAG+ G LA +L G + V+E+ + + G + P +L ++G+ D LE
Sbjct: 47 IIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEG 106
Query: 61 I 61
I
Sbjct: 107 I 107
>gnl|CDD|183358 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 34.1 bits (79), Expect = 0.070
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 17/74 (22%)
Query: 2 IIGAGISGLTLAASLGHRG--IQSCVLEKKDQL-------SDSGFGIQISPNA------- 45
IIG GI+GL+ A L +G +LE D+L GF I++ P +
Sbjct: 5 IIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPS 64
Query: 46 -SRILKRIGILDQL 58
++K +G+ D+L
Sbjct: 65 APALVKELGLEDEL 78
>gnl|CDD|183509 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 33.8 bits (78), Expect = 0.071
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEK 28
+IGAGI+G+T A +L RG Q V ++
Sbjct: 6 VIGAGITGVTTAYALAQRGYQVTVFDR 32
>gnl|CDD|180718 PRK06834, PRK06834, hypothetical protein; Provisional.
Length = 488
Score = 33.5 bits (77), Expect = 0.096
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLG---KKTIPAA-ISAYQKVR---AVRVKR 332
L GDAAH P QG N ++DA L + L K T P + + Y R A RV R
Sbjct: 269 LAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLR 328
>gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine.This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis.
Length = 254
Score = 33.3 bits (76), Expect = 0.099
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK 29
+I+GAG SGLT A L G++ CVLE+
Sbjct: 25 IIVGAGPSGLTAAYYLAKNGLKVCVLERS 53
>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase. Plants and
cyanobacteria (and, supposedly, Chlorobium tepidum)
have a conserved pathway from two molecules
geranylgeranyl-PP to one of all-trans-lycopene. Members
of this family are the enzyme pytoene desaturase (also
called phytoene dehydrogenase). This model does not
include the region of the chloroplast transit peptide
in plants. A closely related family, excluded by this
model, is zeta-carotene desaturase, another enzyme in
the same pathway.
Length = 453
Score = 33.3 bits (76), Expect = 0.12
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL---------SDSGF---GIQI----SPNA 45
I GAG++GL+ A L G VLE +D L D + G+ I PN
Sbjct: 4 IAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNM 63
Query: 46 SRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRF 82
++LK + I D+L+ W +F SRF
Sbjct: 64 LQLLKELNIEDRLQ--WKS-HSMIFNQPDKPGTFSRF 97
>gnl|CDD|162664 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases specific
for the biosyntheses of bacteriochlorophyll and
chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction of
the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ).
Length = 388
Score = 32.8 bits (75), Expect = 0.14
Identities = 64/332 (19%), Positives = 102/332 (30%), Gaps = 72/332 (21%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
+IG G SG T A +L GI++ +LE+ I P I + +E+
Sbjct: 5 VIGGGPSGATAAETLARAGIETILLERALS--------NIKPCGGAIPPCL-----IEEF 51
Query: 62 WIEPEDFVFRSGSTLKELSRFSCKNYSRN----NWGGIYGVVKRHTLQKILLNHIQTQ-- 115
I P+ + R + ++ S + G G+V+R L Q
Sbjct: 52 DI-PDSLIDRR---VTQMRMISPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGA 107
Query: 116 -----PLARLHLSTHITHPDCTQISKINN-QKP----DLLVGADGLNSNIRHYIDTQPIT 165
+L K +K D+++GADG NS + +
Sbjct: 108 ELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPK-- 165
Query: 166 FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLRED---------NTINMVFV 216
N P I +Q PD + Y D + VF
Sbjct: 166 --------------NLPRVIAYQE--RIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFP 209
Query: 217 SSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKK 276
H I+ + H + N + Q P+ W +
Sbjct: 210 KGDH----IAVGTGTGTHGFDAKQLQANLRRRAGLDGGQTIRREAAPIPMKPRPRWDFGR 265
Query: 277 NAVLIGDAAHTLLP-------FAAQGANMAIE 301
A+L+GDAA + P FA + MA +
Sbjct: 266 -AMLVGDAAGLVTPASGEGIYFAMKSGQMAAQ 296
>gnl|CDD|180885 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 32.2 bits (74), Expect = 0.25
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31
IIGAG +GLT A L RG VLE
Sbjct: 9 IIGAGPAGLTAAYELLKRGYPVTVLEADPV 38
>gnl|CDD|181360 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 31.9 bits (73), Expect = 0.29
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 279 VLI-GDAAHTLLPFAAQGANMAIEDAYALSYLLG 311
V I GDA HT A QG N++++D + L + L
Sbjct: 342 VFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLA 375
Score = 29.2 bits (66), Expect = 2.0
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 1 MIIGAGISGLTLAASLGH-RGIQSCVLEKKD 30
+I+G G +GLTLAA L I + ++E+K
Sbjct: 36 LIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66
>gnl|CDD|161930 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This protein
is a flavoprotein and has a beta-alpha-beta
dinucleotide binding motif near the amino end.
Length = 462
Score = 31.3 bits (71), Expect = 0.38
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 2 IIGAGISGLTLAASLG----HRGIQSCVLEKKDQL-------SDSGFGIQISPNASRILK 50
IIG GISGL A L ++ ++E D++ + G+ I+ P++ K
Sbjct: 7 IIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERK 66
Query: 51 RIGILDQLEDIWIEP 65
+ D ++D+ +E
Sbjct: 67 K-SAPDLVKDLGLEH 80
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 30.9 bits (71), Expect = 0.49
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 2 IIGAGISGLTLAASLGHR--GIQSCVLEKKDQLS 33
IIG GI GL+ A L R G + VLEK+ +
Sbjct: 7 IIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40
>gnl|CDD|181412 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 30.9 bits (70), Expect = 0.51
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS 35
I+G G++GLT A SL +G ++ + S+S
Sbjct: 6 IVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNS 39
>gnl|CDD|149204 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 277
Score = 30.0 bits (68), Expect = 1.00
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLE 59
+++G G GL LAA+L G + V+E++D+L + +I L+ +G + L
Sbjct: 140 VVVGGGYIGLELAAALAKLGAEVTVVERRDRL-LARADDEIRAALLEKLEELGGVIVLL 197
>gnl|CDD|161671 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. The gene
is known as glf, ceoA, and rfbD. It is known
experimentally in E. coli, Mycobacterium tuberculosis,
and Klebsiella pneumoniae.
Length = 377
Score = 30.1 bits (68), Expect = 1.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
+I+GAG+SG+ LA L + V+EK++ +
Sbjct: 5 IIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 30.1 bits (68), Expect = 1.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
+IG G +GL +A L G++ ++E +
Sbjct: 4 VIGGGPAGLAIALELARPGLRVQLIEPHPPI 34
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this
family, including sll0033 (crtH) of Synechocystis sp.
PCC 6803, catalyze a cis-trans isomerization of
carotenes to the all-trans lycopene, a reaction that
can also occur non-enzymatically in light through
photoisomerization.
Length = 493
Score = 29.8 bits (67), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEK 28
++IG+GI GL A L +G + VLE+
Sbjct: 4 IVIGSGIGGLVTATQLAVKGAKVLVLER 31
>gnl|CDD|183296 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 29.8 bits (68), Expect = 1.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
+IGAG +GLT A L +G + E +D+
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175
>gnl|CDD|180019 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 29.4 bits (67), Expect = 1.4
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVL 26
++IG G++GLT A + G + L
Sbjct: 6 LVIGGGLAGLTAALAAAEAG-KRVAL 30
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 29.5 bits (66), Expect = 1.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
+I+GAG GL LAAS R + V+E +
Sbjct: 148 VIVGAGTIGLELAASATQRRCKVTVIELAATV 179
>gnl|CDD|178280 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 29.3 bits (66), Expect = 1.7
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCV-LEKKDQL 32
+I+GAG+SG++ A +L GI+ + LE D++
Sbjct: 30 IIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 28.7 bits (65), Expect = 2.3
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 18/69 (26%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQI-----------SPNASRILK 50
++GAG++GL AA L G + +L DQ +++ G Q SP +
Sbjct: 9 VVGAGLAGLVAAAELADAGKRVLLL---DQENEANLGGQAFWSLGGLFLVDSPEQ----R 61
Query: 51 RIGILDQLE 59
R+GI D LE
Sbjct: 62 RLGIKDSLE 70
>gnl|CDD|178181 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 28.6 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 1 MIIGAGISGLTLA-----ASLGHRGIQSCVLEKKDQL 32
+IIGAG++GLT A +S + + V+E D++
Sbjct: 9 VIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 28.8 bits (65), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31
I+GAGI GL A + RG+ V+E+ +
Sbjct: 5 IVGAGILGLAHAYAAARRGLSVTVIERSSR 34
>gnl|CDD|178188 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 28.4 bits (64), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 2 IIGAGISGLTLAASLG-HRGIQSCVLEKKD 30
++GAG+SGL A +L G+ V E +D
Sbjct: 17 VVGAGVSGLAAAYALASKHGVNVLVTEARD 46
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 28.5 bits (64), Expect = 2.9
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 27/112 (24%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRI----LKRIGILDQ 57
++G G +GL +A + G+ C ++ I PN + + +G+LD
Sbjct: 33 VVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS--------IWPNNYGVWVDEFEALGLLDC 84
Query: 58 LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILL 109
L+ W P V+ K+L R YG V R L+ +L
Sbjct: 85 LDTTW--PGAVVYIDDGKKKDLDR-------------PYGRVNRKKLKSKML 121
>gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 28.4 bits (64), Expect = 2.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKD 30
+IGAG +GL A L G V E+++
Sbjct: 544 VIGAGPAGLAAAYFLARAGHPVTVFEREE 572
>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism
associated alcohol dehydrogenase. This clade of
zinc-binding alcohol dehydrogenases (members of
pfam00107) are repeatedly associated with genes proposed
to be involved with the catabolism of phosphonate
compounds.
Length = 280
Score = 28.2 bits (63), Expect = 3.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 1 MIIGAGISGLTLAASLGHRGI 21
+++GAG+ GLT AA+ G
Sbjct: 125 LVVGAGMLGLTAAAAAAAAGA 145
>gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. The motif
GGXCXXXGCXP near the N-terminus contains a redox-active
disulfide.
Length = 461
Score = 28.4 bits (64), Expect = 3.6
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54
IIG G+ G+ A+ G + V+E D++ G ++S ++ LK+ G+
Sbjct: 175 IIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-PGEDAEVSKVVAKALKKKGV 226
>gnl|CDD|163112 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase. All of
these enzymes contain three Pfam domains, pfam03721,
pfam00984, and pfam03720 for the N-terminal, central,
and C-terminal regions respectively.
Length = 411
Score = 28.0 bits (63), Expect = 4.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 2 IIGAGISGLTLAASLGHRGIQ 22
+IG G GL LAA L G +
Sbjct: 5 VIGLGYVGLPLAALLADLGHE 25
>gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 448
Score = 28.0 bits (63), Expect = 4.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31
++G G +GL++ L +GI V++ ++Q
Sbjct: 11 VVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40
>gnl|CDD|171762 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 27.9 bits (62), Expect = 4.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
+++G+G GL+ A + + G + V+EK
Sbjct: 12 VVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43
>gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 27.7 bits (62), Expect = 5.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
++IG+G GL+ A + G+ VLEK+
Sbjct: 13 LVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit.
Length = 785
Score = 27.5 bits (61), Expect = 5.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKR 51
+IG G+ GL A L + G+ V+ L Q+ A R+L+R
Sbjct: 145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK----QLDQTAGRLLQR 190
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 27.7 bits (62), Expect = 5.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLE 27
+IG+G +GLT A L G + E
Sbjct: 145 VIGSGPAGLTCAGDLAKMGYDVTIFE 170
>gnl|CDD|178558 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 27.5 bits (61), Expect = 5.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
+++GAG +GLT A L +G VLE + ++
Sbjct: 697 IVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728
>gnl|CDD|183739 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 27.4 bits (61), Expect = 6.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLE 27
+IG+G +GL+ A L RG V E
Sbjct: 436 VIGSGPAGLSFAGDLAKRGYDVTVFE 461
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 27.3 bits (60), Expect = 6.9
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 126 ITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDT--QPITFS--GDVVLRCLIPQNNA 181
I H C I P ++ A G + + +D+ F G V C +NN
Sbjct: 155 IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNK 214
Query: 182 PEFIDFQSVNIFFGPDSHLVTYPLREDNTI 211
D + I G D +++ E+ TI
Sbjct: 215 I---DIVRLFIKRGADCNIMFMIEGEECTI 241
>gnl|CDD|183763 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 27.4 bits (62), Expect = 7.0
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSG----FGI 39
++G+G +GL A L G + V E+ D++ G +GI
Sbjct: 148 VVGSGPAGLAAADQLARAGHKVTVFERADRI---GGLLRYGI 186
>gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 27.1 bits (61), Expect = 7.8
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 2 IIGAGISGLTLA---ASLGHR 19
+IG G +GL+ A +GH
Sbjct: 142 VIGGGPAGLSAAYHLRRMGHA 162
>gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 27.1 bits (61), Expect = 8.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKD 30
+IGAG +G LAA G++ ++E+
Sbjct: 10 VIGAGQAGPPLAARAAGLGMKVALIERGL 38
>gnl|CDD|183734 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 26.9 bits (60), Expect = 9.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEK 28
IIGAG +GL A L G + V +K
Sbjct: 23 IIGAGPAGLAAAGYLACLGYEVHVYDK 49
>gnl|CDD|183411 PRK12293, hisZ, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 281
Score = 26.9 bits (60), Expect = 9.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 205 LREDNTINMVFVSSKHTLKDISFLKRSEIHKEWF 238
LR D+T+++V + +K L RS HK+WF
Sbjct: 73 LRADSTLDVVRIVTKR-------LGRSTEHKKWF 99
>gnl|CDD|181909 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 26.6 bits (60), Expect = 9.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEK 28
MI+G G G LA L G ++E+
Sbjct: 235 MIVGGGNIGYYLAKLLEKEGYSVKLIER 262
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.138 0.424
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,259,669
Number of extensions: 400115
Number of successful extensions: 999
Number of sequences better than 10.0: 1
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 143
Length of query: 380
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 285
Effective length of database: 3,941,713
Effective search space: 1123388205
Effective search space used: 1123388205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.3 bits)