BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding
protein [Candidatus Liberibacter asiaticus str. psy62]
         (380 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 380

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/380 (100%), Positives = 380/380 (100%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
           MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED
Sbjct: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60

Query: 61  IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120
           IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL
Sbjct: 61  IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120

Query: 121 HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNN 180
           HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNN
Sbjct: 121 HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNN 180

Query: 181 APEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVK 240
           APEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVK
Sbjct: 181 APEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVK 240

Query: 241 HLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAI 300
           HLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAI
Sbjct: 241 HLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAI 300

Query: 301 EDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRL 360
           EDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRL
Sbjct: 301 EDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRL 360

Query: 361 GIHKPLHKSLDWIYQYKIPE 380
           GIHKPLHKSLDWIYQYKIPE
Sbjct: 361 GIHKPLHKSLDWIYQYKIPE 380


>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 384

 Score = 49.7 bits (117), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 141/376 (37%), Gaps = 35/376 (9%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
           +IIG+G++G   A     +G  + ++  +  L D    + +       LK I + D L+D
Sbjct: 7   IIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGID-FLKEINVWDFLQD 65

Query: 61  I--------WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112
           I         ++  D +  +   +   S      +  N        +  H L +     I
Sbjct: 66  IAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYN--------IPNHVLMESFAEKI 117

Query: 113 QTQPLAR----LHLSTHITHPDCTQISKINNQ-KPDLLVGADGLNSNIRHYIDTQPITFS 167
              PL      L     I   + T +     Q     L+G+DG NS++R  +      +S
Sbjct: 118 SQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWS 177

Query: 168 GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227
                  L  Q++ P   + + V  F      +   PLRE N  ++V++           
Sbjct: 178 YPQKALVLNFQHSMPH--NGRCVE-FHKSLGTITQIPLRE-NFSSLVWIMESQEADFYYK 233

Query: 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHT 287
           L  +EI      + L  +   +I  I  + D  ++ L      H   KK  VL+G+AAH 
Sbjct: 234 LPVNEI-----ARRLEQYLYPVIGKIEVVTDVQIFQL-SGMISHCFGKKRVVLVGEAAHA 287

Query: 288 LLPFAAQGANMAIEDAYALSYLLGKK--TIPAAISAYQKV-RAVRVKRIRYRTKLNQLLF 344
           L P   QG N+++ D   L  L   +  +  A  + Y  + R   +KRI      N+ LF
Sbjct: 288 LPPICGQGLNLSMRDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLF 347

Query: 345 HMHRPASLFRNAGLRL 360
             +    + R     L
Sbjct: 348 SRYPLLQILRAGTFHL 363


>gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 250

 Score = 26.6 bits (57), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 111 HIQTQPLARLHLSTHITHPDCTQIS--KINNQKPDLLVGADGLNSNIRHYI 159
           +I  + +++   + H T  DC  I+  K++++KPDL++    + +N  +++
Sbjct: 51  NIACRTISKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHV 101


>gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 347

 Score = 25.0 bits (53), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 290 PFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAV-RVKRIRY 335
           PF  Q A+ A+ D   LSY L  KT       ++ V  V  ++RIRY
Sbjct: 79  PFVKQMASHALHDFLYLSYSLNPKT-----GKWRTVITVDEIRRIRY 120


>gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 69

 Score = 24.3 bits (51), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 21/51 (41%)

Query: 79  LSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP 129
           LS FS K YSRNN    Y +     +   LL     QP+     + H   P
Sbjct: 2   LSDFSKKYYSRNNNSIYYFIGLEQEILGSLLLKGNLQPIISFLDAQHFIDP 52


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,937
Number of Sequences: 1233
Number of extensions: 10715
Number of successful extensions: 36
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 10
length of query: 380
length of database: 328,796
effective HSP length: 75
effective length of query: 305
effective length of database: 236,321
effective search space: 72077905
effective search space used: 72077905
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 39 (19.6 bits)