Query         gi|254780169|ref|YP_003064582.1| hypothetical protein CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 54
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Sun May 22 21:16:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780169.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2j63_A AP-endonuclease; base   24.8      41  0.0012   16.6   1.9   27   25-51     17-43  (126)
  2 >2wyh_A Alpha-mannosidase; hyd  19.4      31 0.00091   17.3   0.3   38   14-51     16-56  (72)
  3 >1pq3_A Arginase II, mitochond  16.9      96  0.0028   14.7   2.7   21   14-34    212-232 (306)
  4 >3fvh_A Serine/threonine-prote  13.3 1.1E+02  0.0032   14.5   1.8   13   39-51      9-21  (136)
  5 >1woh_A Agmatinase; alpha/beta  11.6 1.3E+02  0.0039   14.0   1.9   20   15-34    214-233 (305)
  6 >1ev0_A MINE; topological spec  10.2 1.5E+02  0.0045   13.7   1.8   17   38-54      8-25  (58)
  7 >2h7o_A Protein kinase YPKA; Y  10.0      65  0.0019   15.6  -0.2   35   10-53     49-83  (97)
  8 >2nlv_A XISI protein-like; YP_   9.6 1.6E+02  0.0048   13.5   2.7   18   35-52      5-22  (112)
  9 >1yc5_A NAD-dependent deacetyl   9.6 1.1E+02  0.0034   14.3   1.0   14   25-38     94-107 (200)
 10 >1q1a_A HST2 protein; ternary    9.5      99  0.0029   14.7   0.6   14   25-38     56-69  (189)

No 1  
>>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:135-232,A:440-467)
Probab=24.80  E-value=41  Score=16.61  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=18.4

Q ss_pred             EEEEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             377851547999999999999999997
Q gi|254780169|r   25 LFLSFNIDGLFEKYLEIIQQLLSVIAS   51 (54)
Q Consensus        25 lflsfnidglfekyleiiqqllsvias   51 (54)
                      -++|+||.|+....-.-.+.++..|..
T Consensus        17 kIlT~NV~gl~~~~k~~~~~l~~~i~~   43 (126)
T 2j63_A           17 KFITWNVAGLRGLLKKNASALRAFMEA   43 (126)
T ss_dssp             EEEEEECSCHHHHHHHCTTHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHCCHHHHHHHHHH
T ss_conf             999990156777643254899999985


No 2  
>>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* (A:41-112)
Probab=19.45  E-value=31  Score=17.27  Aligned_cols=38  Identities=26%  Similarity=0.581  Sum_probs=26.8

Q ss_pred             HHHHCCCCCCEEEEEEEHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf             77740233470377851547---999999999999999997
Q gi|254780169|r   14 KKVFKGFKAQPLFLSFNIDG---LFEKYLEIIQQLLSVIAS   51 (54)
Q Consensus        14 kkvfkgfkaqplflsfnidg---lfekyleiiqqllsvias   51 (54)
                      ..|..-+...|-|-+|..||   +.|.||++-.+-..-|..
T Consensus        16 ~~vl~~LE~~~~~~~F~LDGQt~ileDYL~~~Pe~~eri~k   56 (72)
T 2wyh_A           16 DDLLEVFQTDPDFHSFHLDGQTIILDDYLKVRPEREPEIRQ   56 (72)
T ss_dssp             HHHHHHHHHCTTCCCEECTTBTHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCHHHHHHHHH
T ss_conf             99999998698862899901899999998659999999999


No 3  
>>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} (A:)
Probab=16.86  E-value=96  Score=14.72  Aligned_cols=21  Identities=33%  Similarity=0.684  Sum_probs=15.9

Q ss_pred             HHHHCCCCCCEEEEEEEHHHH
Q ss_conf             777402334703778515479
Q gi|254780169|r   14 KKVFKGFKAQPLFLSFNIDGL   34 (54)
Q Consensus        14 kkvfkgfkaqplflsfnidgl   34 (54)
                      .+..+....+|+|+||.+|.+
T Consensus       212 ~~~~~~~~~~~vyisiDiDvl  232 (306)
T 1pq3_A          212 FDLLIGKRQRPIHLSFDIDAF  232 (306)
T ss_dssp             HHHHHSSSCCCEEEEEEGGGB
T ss_pred             HHHHHCCCCCCEEEEEECCCC
T ss_conf             999850468845999864653


No 4  
>>3fvh_A Serine/threonine-protein kinase PLK1; POLO like kinas 1, POLO box domain, phosphopeptide binding domain, ATP-binding, cell cycle; HET: TPO; 1.58A {Homo sapiens} PDB: 1q4k_B* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3hik_A* 1q4o_A* 1umw_A* 3hih_A 3c5l_A* (A:1-33,A:135-237)
Probab=13.29  E-value=1.1e+02  Score=14.47  Aligned_cols=13  Identities=54%  Similarity=0.534  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999997
Q gi|254780169|r   39 LEIIQQLLSVIAS   51 (54)
Q Consensus        39 leiiqqllsvias   51 (54)
                      -+..|||.+|.||
T Consensus         9 sdmLQQL~~vnas   21 (136)
T 3fvh_A            9 SDMLQQLHSVNAS   21 (136)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999997622468


No 5  
>>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} (A:)
Probab=11.64  E-value=1.3e+02  Score=14.02  Aligned_cols=20  Identities=20%  Similarity=0.433  Sum_probs=15.8

Q ss_pred             HHHCCCCCCEEEEEEEHHHH
Q ss_conf             77402334703778515479
Q gi|254780169|r   15 KVFKGFKAQPLFLSFNIDGL   34 (54)
Q Consensus        15 kvfkgfkaqplflsfnidgl   34 (54)
                      ++.+-.+..|.|+||.+|.|
T Consensus       214 ~~~~~~~~~~vyisiDiDvl  233 (305)
T 1woh_A          214 VLAQLPRGQNVYFSVDVDGF  233 (305)
T ss_dssp             HHTTSCCSSEEEEEEEGGGB
T ss_pred             HHHHCCCCCEEEEEEEECEE
T ss_conf             88612368807999850205


No 6  
>>1ev0_A MINE; topological specificity, cell division, mincd, minicell, cell cycle; NMR {Escherichia coli} (A:)
Probab=10.24  E-value=1.5e+02  Score=13.70  Aligned_cols=17  Identities=41%  Similarity=0.833  Sum_probs=11.4

Q ss_pred             HHHHH-HHHHHHHHHHCC
Q ss_conf             99999-999999997509
Q gi|254780169|r   38 YLEII-QQLLSVIASYVE   54 (54)
Q Consensus        38 yleii-qqllsviasyve   54 (54)
                      ||... +.+|.||+-||.
T Consensus         8 yLp~L~~Eil~VI~KyV~   25 (58)
T 1ev0_A            8 YLPQLRKDILEVICKYVQ   25 (58)
T ss_dssp             SHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHEE
T ss_conf             699999999999987588


No 7  
>>2h7o_A Protein kinase YPKA; YOPO, GDI, signaling protein; 2.00A {Yersinia pseudotuberculosis} PDB: 2h7v_C* (A:1-97)
Probab=10.03  E-value=65  Score=15.60  Aligned_cols=35  Identities=29%  Similarity=0.311  Sum_probs=24.2

Q ss_pred             HHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             76027774023347037785154799999999999999999750
Q gi|254780169|r   10 FVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYV   53 (54)
Q Consensus        10 fvenkkvfkgfkaqplflsfnidglfekyleiiqqllsviasyv   53 (54)
                      -+-||.--.||-.|.-|+|||-         .|-.--.||++||
T Consensus        49 ~~LdKAErqg~~d~dq~kSfnS---------LilKty~Vi~dYV   83 (97)
T 2h7o_A           49 VALDKAEREGGVDKDQLKSFNS---------LILKTYRVIEDYV   83 (97)
T ss_dssp             HHHHHHHHC--CCHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHH---------HHHHHHHHHHHHH
T ss_conf             9988998705740657876999---------9998647899997


No 8  
>>2nlv_A XISI protein-like; YP_324325.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: MSE; 1.30A {Anabaena variabilis atcc 29413} (A:)
Probab=9.63  E-value=1.6e+02  Score=13.53  Aligned_cols=18  Identities=39%  Similarity=0.563  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999975
Q gi|254780169|r   35 FEKYLEIIQQLLSVIASY   52 (54)
Q Consensus        35 fekyleiiqqllsviasy   52 (54)
                      .++|-.|||++|+--|.+
T Consensus         5 l~~Yr~iI~~iL~~ya~~   22 (112)
T 2nlv_A            5 LVKYQELVKKLLTNYASD   22 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             889999999999998627


No 9  
>>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} (A:1-117,A:164-246)
Probab=9.61  E-value=1.1e+02  Score=14.33  Aligned_cols=14  Identities=29%  Similarity=0.434  Sum_probs=11.1

Q ss_pred             EEEEEEHHHHHHHH
Q ss_conf             37785154799999
Q gi|254780169|r   25 LFLSFNIDGLFEKY   38 (54)
Q Consensus        25 lflsfnidglfeky   38 (54)
                      ..+.-|+|+||++.
T Consensus        94 ~iiTqNiD~l~~~a  107 (200)
T 1yc5_A           94 AVITQNIDRLHQRA  107 (200)
T ss_dssp             EEEECCCSCHHHHT
T ss_pred             EEEECCHHHHHHHC
T ss_conf             37621535789863


No 10 
>>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} (A:1-34,A:86-134,A:184-289)
Probab=9.52  E-value=99  Score=14.65  Aligned_cols=14  Identities=29%  Similarity=0.192  Sum_probs=10.5

Q ss_pred             EEEEEEHHHHHHHH
Q ss_conf             37785154799999
Q gi|254780169|r   25 LFLSFNIDGLFEKY   38 (54)
Q Consensus        25 lflsfnidglfeky   38 (54)
                      ..++-|||||+++-
T Consensus        56 ~viTQNVDgLh~kA   69 (189)
T 1q1a_A           56 RVYTQNIDTLERQA   69 (189)
T ss_dssp             EEEECCSSCHHHHT
T ss_pred             EEEEECCCCHHHHC
T ss_conf             89963320468775


Done!