Query gi|254780169|ref|YP_003064582.1| hypothetical protein CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 54 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Sun May 22 21:16:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780169.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2j63_A AP-endonuclease; base 24.8 41 0.0012 16.6 1.9 27 25-51 17-43 (126) 2 >2wyh_A Alpha-mannosidase; hyd 19.4 31 0.00091 17.3 0.3 38 14-51 16-56 (72) 3 >1pq3_A Arginase II, mitochond 16.9 96 0.0028 14.7 2.7 21 14-34 212-232 (306) 4 >3fvh_A Serine/threonine-prote 13.3 1.1E+02 0.0032 14.5 1.8 13 39-51 9-21 (136) 5 >1woh_A Agmatinase; alpha/beta 11.6 1.3E+02 0.0039 14.0 1.9 20 15-34 214-233 (305) 6 >1ev0_A MINE; topological spec 10.2 1.5E+02 0.0045 13.7 1.8 17 38-54 8-25 (58) 7 >2h7o_A Protein kinase YPKA; Y 10.0 65 0.0019 15.6 -0.2 35 10-53 49-83 (97) 8 >2nlv_A XISI protein-like; YP_ 9.6 1.6E+02 0.0048 13.5 2.7 18 35-52 5-22 (112) 9 >1yc5_A NAD-dependent deacetyl 9.6 1.1E+02 0.0034 14.3 1.0 14 25-38 94-107 (200) 10 >1q1a_A HST2 protein; ternary 9.5 99 0.0029 14.7 0.6 14 25-38 56-69 (189) No 1 >>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:135-232,A:440-467) Probab=24.80 E-value=41 Score=16.61 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=18.4 Q ss_pred EEEEEEHHHHHHHHHHHHHHHHHHHHH Q ss_conf 377851547999999999999999997 Q gi|254780169|r 25 LFLSFNIDGLFEKYLEIIQQLLSVIAS 51 (54) Q Consensus 25 lflsfnidglfekyleiiqqllsvias 51 (54) -++|+||.|+....-.-.+.++..|.. T Consensus 17 kIlT~NV~gl~~~~k~~~~~l~~~i~~ 43 (126) T 2j63_A 17 KFITWNVAGLRGLLKKNASALRAFMEA 43 (126) T ss_dssp EEEEEECSCHHHHHHHCTTHHHHHHHH T ss_pred EEEEEECCCHHHHHHCCHHHHHHHHHH T ss_conf 999990156777643254899999985 No 2 >>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* (A:41-112) Probab=19.45 E-value=31 Score=17.27 Aligned_cols=38 Identities=26% Similarity=0.581 Sum_probs=26.8 Q ss_pred HHHHCCCCCCEEEEEEEHHH---HHHHHHHHHHHHHHHHHH Q ss_conf 77740233470377851547---999999999999999997 Q gi|254780169|r 14 KKVFKGFKAQPLFLSFNIDG---LFEKYLEIIQQLLSVIAS 51 (54) Q Consensus 14 kkvfkgfkaqplflsfnidg---lfekyleiiqqllsvias 51 (54) ..|..-+...|-|-+|..|| +.|.||++-.+-..-|.. T Consensus 16 ~~vl~~LE~~~~~~~F~LDGQt~ileDYL~~~Pe~~eri~k 56 (72) T 2wyh_A 16 DDLLEVFQTDPDFHSFHLDGQTIILDDYLKVRPEREPEIRQ 56 (72) T ss_dssp HHHHHHHHHCTTCCCEECTTBTHHHHHHHHHCGGGHHHHHH T ss_pred HHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCHHHHHHHHH T ss_conf 99999998698862899901899999998659999999999 No 3 >>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} (A:) Probab=16.86 E-value=96 Score=14.72 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=15.9 Q ss_pred HHHHCCCCCCEEEEEEEHHHH Q ss_conf 777402334703778515479 Q gi|254780169|r 14 KKVFKGFKAQPLFLSFNIDGL 34 (54) Q Consensus 14 kkvfkgfkaqplflsfnidgl 34 (54) .+..+....+|+|+||.+|.+ T Consensus 212 ~~~~~~~~~~~vyisiDiDvl 232 (306) T 1pq3_A 212 FDLLIGKRQRPIHLSFDIDAF 232 (306) T ss_dssp HHHHHSSSCCCEEEEEEGGGB T ss_pred HHHHHCCCCCCEEEEEECCCC T ss_conf 999850468845999864653 No 4 >>3fvh_A Serine/threonine-protein kinase PLK1; POLO like kinas 1, POLO box domain, phosphopeptide binding domain, ATP-binding, cell cycle; HET: TPO; 1.58A {Homo sapiens} PDB: 1q4k_B* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3hik_A* 1q4o_A* 1umw_A* 3hih_A 3c5l_A* (A:1-33,A:135-237) Probab=13.29 E-value=1.1e+02 Score=14.47 Aligned_cols=13 Identities=54% Similarity=0.534 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999997 Q gi|254780169|r 39 LEIIQQLLSVIAS 51 (54) Q Consensus 39 leiiqqllsvias 51 (54) -+..|||.+|.|| T Consensus 9 sdmLQQL~~vnas 21 (136) T 3fvh_A 9 SDMLQQLHSVNAS 21 (136) T ss_dssp HHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCC T ss_conf 9999997622468 No 5 >>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} (A:) Probab=11.64 E-value=1.3e+02 Score=14.02 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=15.8 Q ss_pred HHHCCCCCCEEEEEEEHHHH Q ss_conf 77402334703778515479 Q gi|254780169|r 15 KVFKGFKAQPLFLSFNIDGL 34 (54) Q Consensus 15 kvfkgfkaqplflsfnidgl 34 (54) ++.+-.+..|.|+||.+|.| T Consensus 214 ~~~~~~~~~~vyisiDiDvl 233 (305) T 1woh_A 214 VLAQLPRGQNVYFSVDVDGF 233 (305) T ss_dssp HHTTSCCSSEEEEEEEGGGB T ss_pred HHHHCCCCCEEEEEEEECEE T ss_conf 88612368807999850205 No 6 >>1ev0_A MINE; topological specificity, cell division, mincd, minicell, cell cycle; NMR {Escherichia coli} (A:) Probab=10.24 E-value=1.5e+02 Score=13.70 Aligned_cols=17 Identities=41% Similarity=0.833 Sum_probs=11.4 Q ss_pred HHHHH-HHHHHHHHHHCC Q ss_conf 99999-999999997509 Q gi|254780169|r 38 YLEII-QQLLSVIASYVE 54 (54) Q Consensus 38 yleii-qqllsviasyve 54 (54) ||... +.+|.||+-||. T Consensus 8 yLp~L~~Eil~VI~KyV~ 25 (58) T 1ev0_A 8 YLPQLRKDILEVICKYVQ 25 (58) T ss_dssp SHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHEE T ss_conf 699999999999987588 No 7 >>2h7o_A Protein kinase YPKA; YOPO, GDI, signaling protein; 2.00A {Yersinia pseudotuberculosis} PDB: 2h7v_C* (A:1-97) Probab=10.03 E-value=65 Score=15.60 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=24.2 Q ss_pred HHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 76027774023347037785154799999999999999999750 Q gi|254780169|r 10 FVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYV 53 (54) Q Consensus 10 fvenkkvfkgfkaqplflsfnidglfekyleiiqqllsviasyv 53 (54) -+-||.--.||-.|.-|+|||- .|-.--.||++|| T Consensus 49 ~~LdKAErqg~~d~dq~kSfnS---------LilKty~Vi~dYV 83 (97) T 2h7o_A 49 VALDKAEREGGVDKDQLKSFNS---------LILKTYRVIEDYV 83 (97) T ss_dssp HHHHHHHHC--CCHHHHHHHHH---------HHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHH---------HHHHHHHHHHHHH T ss_conf 9988998705740657876999---------9998647899997 No 8 >>2nlv_A XISI protein-like; YP_324325.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: MSE; 1.30A {Anabaena variabilis atcc 29413} (A:) Probab=9.63 E-value=1.6e+02 Score=13.53 Aligned_cols=18 Identities=39% Similarity=0.563 Sum_probs=15.1 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999975 Q gi|254780169|r 35 FEKYLEIIQQLLSVIASY 52 (54) Q Consensus 35 fekyleiiqqllsviasy 52 (54) .++|-.|||++|+--|.+ T Consensus 5 l~~Yr~iI~~iL~~ya~~ 22 (112) T 2nlv_A 5 LVKYQELVKKLLTNYASD 22 (112) T ss_dssp HHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 889999999999998627 No 9 >>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} (A:1-117,A:164-246) Probab=9.61 E-value=1.1e+02 Score=14.33 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=11.1 Q ss_pred EEEEEEHHHHHHHH Q ss_conf 37785154799999 Q gi|254780169|r 25 LFLSFNIDGLFEKY 38 (54) Q Consensus 25 lflsfnidglfeky 38 (54) ..+.-|+|+||++. T Consensus 94 ~iiTqNiD~l~~~a 107 (200) T 1yc5_A 94 AVITQNIDRLHQRA 107 (200) T ss_dssp EEEECCCSCHHHHT T ss_pred EEEECCHHHHHHHC T ss_conf 37621535789863 No 10 >>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} (A:1-34,A:86-134,A:184-289) Probab=9.52 E-value=99 Score=14.65 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=10.5 Q ss_pred EEEEEEHHHHHHHH Q ss_conf 37785154799999 Q gi|254780169|r 25 LFLSFNIDGLFEKY 38 (54) Q Consensus 25 lflsfnidglfeky 38 (54) ..++-|||||+++- T Consensus 56 ~viTQNVDgLh~kA 69 (189) T 1q1a_A 56 RVYTQNIDTLERQA 69 (189) T ss_dssp EEEECCSSCHHHHT T ss_pred EEEEECCCCHHHHC T ss_conf 89963320468775 Done!