Query gi|254780169|ref|YP_003064582.1| hypothetical protein CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 54
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Sun May 22 22:03:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780169.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ev0_A MINE; topological speci 22.6 35 0.0015 16.2 1.9 17 38-54 8-25 (58)
2 1pq3_A Arginase II, mitochondr 14.8 77 0.0032 14.4 2.7 23 13-35 211-233 (306)
3 2aeb_A Arginase 1; hydrolase, 13.8 82 0.0035 14.3 2.7 23 12-34 214-236 (322)
4 2nlv_A XISI protein-like; XISI 10.1 1.1E+02 0.0046 13.6 2.7 20 32-52 3-22 (112)
5 3d7q_A XISI protein-like; ZP_0 9.9 1.1E+02 0.0047 13.6 2.8 21 31-52 2-22 (112)
6 2ef5_A Arginase; TTHA1496, str 8.8 1.2E+02 0.0049 13.5 1.5 17 18-34 205-221 (290)
7 2nwv_A XISI protein-like; YP_3 8.0 1.4E+02 0.0057 13.2 2.8 18 35-52 5-22 (114)
8 3ecf_A NTF2-like protein; YP_3 7.6 1.4E+02 0.0059 13.1 2.7 15 35-49 4-18 (130)
9 3lhl_A Putative agmatinase; pr 7.0 1.5E+02 0.0064 12.9 1.6 16 19-34 191-206 (287)
10 1q1a_A HST2 protein; ternary c 7.0 88 0.0037 14.1 0.2 13 25-37 107-119 (289)
No 1
>1ev0_A MINE; topological specificity, cell division, mincd, minicell, cell cycle; NMR {Escherichia coli} SCOP: d.71.1.1
Probab=22.63 E-value=35 Score=16.17 Aligned_cols=17 Identities=41% Similarity=0.833 Sum_probs=12.0
Q ss_pred HHHHHH-HHHHHHHHHCC
Q ss_conf 999999-99999997509
Q gi|254780169|r 38 YLEIIQ-QLLSVIASYVE 54 (54)
Q Consensus 38 yleiiq-qllsviasyve 54 (54)
||+..| .++.||+-||+
T Consensus 8 ~Lp~Lk~eIl~VI~KYv~ 25 (58)
T 1ev0_A 8 YLPQLRKDILEVICKYVQ 25 (58)
T ss_dssp SHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHEE
T ss_conf 399999999999987387
No 2
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=14.77 E-value=77 Score=14.42 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=15.8
Q ss_pred HHHHHCCCCCCEEEEEEEHHHHH
Q ss_conf 27774023347037785154799
Q gi|254780169|r 13 NKKVFKGFKAQPLFLSFNIDGLF 35 (54)
Q Consensus 13 nkkvfkgfkaqplflsfnidglf 35 (54)
......+-+..|+++||.+|.+-
T Consensus 211 ~~~~~~~~~~~~vyls~DiDvlD 233 (306)
T 1pq3_A 211 TFDLLIGKRQRPIHLSFDIDAFD 233 (306)
T ss_dssp HHHHHHSSSCCCEEEEEEGGGBC
T ss_pred HHHHHHCCCCCCEEEEEECCCCC
T ss_conf 99998504688459998646537
No 3
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibitor, perfectly twinned crystal; HET: AB5; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 1wvb_A* 3e6v_A* 3e6k_A* 1d3v_A* 1hq5_A* ...
Probab=13.82 E-value=82 Score=14.28 Aligned_cols=23 Identities=43% Similarity=0.764 Sum_probs=15.7
Q ss_pred HHHHHHCCCCCCEEEEEEEHHHH
Q ss_conf 02777402334703778515479
Q gi|254780169|r 12 ENKKVFKGFKAQPLFLSFNIDGL 34 (54)
Q Consensus 12 enkkvfkgfkaqplflsfnidgl 34 (54)
+......+....|+++||.+|.|
T Consensus 214 ~~~~~l~~~~~~~vyls~DiDvl 236 (322)
T 2aeb_A 214 ETLSYLLGRKKRPIHLSFDVDGL 236 (322)
T ss_dssp HHHHHHHSSSCCCEEEEEEGGGB
T ss_pred HHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99999853688837999762644
No 4
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 1.30A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=10.12 E-value=1.1e+02 Score=13.63 Aligned_cols=20 Identities=45% Similarity=0.600 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 479999999999999999975
Q gi|254780169|r 32 DGLFEKYLEIIQQLLSVIASY 52 (54)
Q Consensus 32 dglfekyleiiqqllsviasy 52 (54)
|-| ++|-.|||++|+--|++
T Consensus 3 Dkl-~~Yr~iI~~iL~~ya~~ 22 (112)
T 2nlv_A 3 DKL-VKYQELVKKLLTNYASD 22 (112)
T ss_dssp HHH-HHHHHHHHHHHHHHHHT
T ss_pred CHH-HHHHHHHHHHHHHHHCC
T ss_conf 118-89999999999998637
No 5
>3d7q_A XISI protein-like; ZP_00106052.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.30A {Nostoc punctiforme pcc 73102}
Probab=9.88 E-value=1.1e+02 Score=13.58 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5479999999999999999975
Q gi|254780169|r 31 IDGLFEKYLEIIQQLLSVIASY 52 (54)
Q Consensus 31 idglfekyleiiqqllsviasy 52 (54)
.|-| ++|-.|||++|+--|.+
T Consensus 2 MDkl-~~Yr~iI~~iL~~Ya~~ 22 (112)
T 3d7q_A 2 MDKL-NEYRTKVRQLLTKHLQY 22 (112)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHHHHCC
T ss_conf 6108-89999999999998517
No 6
>2ef5_A Arginase; TTHA1496, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=8.77 E-value=1.2e+02 Score=13.51 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=12.6
Q ss_pred CCCCCCEEEEEEEHHHH
Q ss_conf 02334703778515479
Q gi|254780169|r 18 KGFKAQPLFLSFNIDGL 34 (54)
Q Consensus 18 kgfkaqplflsfnidgl 34 (54)
.-.+..|+++||.+|.+
T Consensus 205 ~~~~~~~vylsiDiDvl 221 (290)
T 2ef5_A 205 KHLQGLPLHVSLDADVL 221 (290)
T ss_dssp HHTTTSCEEEEEEGGGB
T ss_pred HHHCCCCEEEEEECCCC
T ss_conf 98278853887751431
No 7
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=8.03 E-value=1.4e+02 Score=13.17 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999975
Q gi|254780169|r 35 FEKYLEIIQQLLSVIASY 52 (54)
Q Consensus 35 fekyleiiqqllsviasy 52 (54)
.++|-.|||++|.--|.+
T Consensus 5 l~~Yr~iI~~iL~~Ya~~ 22 (114)
T 2nwv_A 5 VAEYRKLIKQVLTEYDNL 22 (114)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 889999999999999864
No 8
>3ecf_A NTF2-like protein; YP_324687.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Anabaena variabilis atcc 29413} SCOP: d.17.4.21
Probab=7.63 E-value=1.4e+02 Score=13.07 Aligned_cols=15 Identities=33% Similarity=0.529 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780169|r 35 FEKYLEIIQQLLSVI 49 (54)
Q Consensus 35 fekyleiiqqllsvi 49 (54)
-|||.|||.|.+...
T Consensus 4 ~ek~~eIi~qY~~aF 18 (130)
T 3ecf_A 4 TEKYHEILKKYFLSF 18 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 788999999999873
No 9
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.30A {Clostridium difficile}
Probab=7.03 E-value=1.5e+02 Score=12.91 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=11.1
Q ss_pred CCCCCEEEEEEEHHHH
Q ss_conf 2334703778515479
Q gi|254780169|r 19 GFKAQPLFLSFNIDGL 34 (54)
Q Consensus 19 gfkaqplflsfnidgl 34 (54)
-....|.++||.+|.+
T Consensus 191 ~~~~~~vylSiDiDvl 206 (287)
T 3lhl_A 191 MLNGKNIYLTIDLDVL 206 (287)
T ss_dssp HTTTCEEEEEEEGGGB
T ss_pred HHCCCCEEEEEECCCC
T ss_conf 7468864999865765
No 10
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=6.99 E-value=88 Score=14.14 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=8.5
Q ss_pred EEEEEEHHHHHHH
Q ss_conf 3778515479999
Q gi|254780169|r 25 LFLSFNIDGLFEK 37 (54)
Q Consensus 25 lflsfnidglfek 37 (54)
....-|||||+++
T Consensus 107 ~viTQNIDgLh~k 119 (289)
T 1q1a_A 107 RVYTQNIDTLERQ 119 (289)
T ss_dssp EEEECCSSCHHHH
T ss_pred EEEEECCCCHHHH
T ss_conf 8996333338876
Done!