RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780169|ref|YP_003064582.1| hypothetical protein
CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62]
         (54 letters)



>gnl|CDD|184324 PRK13785, PRK13785, adenylosuccinate synthetase; Provisional.
          Length = 454

 Score = 29.3 bits (66), Expect = 0.22
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 7   KKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQL 45
           K+   E+  V+ G  A     +F++D LFE+Y E  ++L
Sbjct: 166 KRALAED--VY-GLDASETPEAFDVDALFEEYREYGERL 201


>gnl|CDD|179510 PRK02947, PRK02947, hypothetical protein; Provisional.
          Length = 246

 Score = 29.5 bits (67), Expect = 0.22
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 7/29 (24%)

Query: 24  PLFLSFNIDG-------LFEKYLEIIQQL 45
           P+FLS N+DG       L EKY + I +L
Sbjct: 217 PVFLSANVDGGDEHNQALVEKYRDRIPRL 245


>gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional.
          Length = 602

 Score = 27.8 bits (62), Expect = 0.62
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 2   CTPLMKKIFVENKKV-FKGFKAQ--PLFLSFNIDGLFEKYLEIIQ---QLLSVI 49
           C+   + I    K    KG      P F  F ++GL ++YL+II    Q L+V+
Sbjct: 159 CSNGAENISWSTKPGKGKGTSVTFIPDFSHFEVNGLDQQYLDIILDRLQTLAVV 212


>gnl|CDD|163455 TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL
           subfamily.  Members of this protein family are the
           putative conjugative coupling factor, TraD (or TraG),
           rather distantly related to the well-characterized TraD
           of the F plasmid. Members are associated with
           conjugative-transposon-like mobile genetic elements of
           the class that includes SXT, an antibiotic resistance
           transfer element in some Vibrio cholerae strains.
          Length = 634

 Score = 24.5 bits (54), Expect = 6.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 26  FLSFNIDGLFEKYLEII 42
           ++   I+ L EKYLE  
Sbjct: 308 YVESGIEPLLEKYLEKF 324


>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
           Provisional.
          Length = 530

 Score = 24.5 bits (54), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 7   KKIF---VENKKVFKGFKAQPLFLSFNI 31
           KK+    +E + + KGF   PLF + N+
Sbjct: 313 KKLHRNALEVENLTKGFDNGPLFKNLNL 340


>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
          Length = 932

 Score = 24.0 bits (52), Expect = 8.8
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 14  KKVFKGFKAQP------LFLSFNIDGLFEKYLEIIQQLLSVIASYV 53
           +K FK             F  F I  L ++  E I QLL +I  YV
Sbjct: 752 EKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYV 797


>gnl|CDD|181823 PRK09401, PRK09401, reverse gyrase; Reviewed.
          Length = 1176

 Score = 24.1 bits (53), Expect = 9.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)

Query: 9   IFVENKKVFKGFKAQPLFLSFNID 32
           + V+++K+F+  K +  +L   I+
Sbjct: 544 LLVDDEKLFESLKKKLRWLLPEIE 567


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.144    0.409 

Gapped
Lambda     K      H
   0.267   0.0746    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 860,520
Number of extensions: 37799
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 19
Length of query: 54
Length of database: 5,994,473
Length adjustment: 26
Effective length of query: 28
Effective length of database: 5,432,665
Effective search space: 152114620
Effective search space used: 152114620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.0 bits)