RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780169|ref|YP_003064582.1| hypothetical protein
CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62]
         (54 letters)



>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway,
           coenzyme A, structure- function studies, alpha-beta
           hydrolase fold; 1.65A {Haemophilus influenzae} SCOP:
           c.69.1.40
          Length = 377

 Score = 26.3 bits (57), Expect = 1.8
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 10  FVENKKVFKGFKAQPLFLSFNIDGLF--EKYLEIIQQLLSVI--ASYVE 54
           +   K+     KA+   +S   D LF      +  Q L        + E
Sbjct: 301 YENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYE 349


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.5 bits (53), Expect = 6.3
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 19/51 (37%)

Query: 8   KIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEI-------IQQLLSVIAS 51
           ++      +F G   Q      N D  FE+  ++       +  L+   A 
Sbjct: 155 QLVA----IFGG---QG-----NTDDYFEELRDLYQTYHVLVGDLIKFSAE 193


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.144    0.409 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 444,320
Number of extensions: 14526
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 5
Length of query: 54
Length of database: 5,693,230
Length adjustment: 26
Effective length of query: 28
Effective length of database: 5,062,886
Effective search space: 141760808
Effective search space used: 141760808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.5 bits)