HHsearch alignment for GI: 254780170 and conserved domain: COG0834

>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].
Probab=100.00  E-value=2.1e-33  Score=231.90  Aligned_cols=221  Identities=27%  Similarity=0.352  Sum_probs=181.1

Q ss_pred             HHHHHHHCCEEEEEEECC-CCCCEEECCC-CCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC
Q ss_conf             689998579499987178-9883068898-98801509999999999679822025998143100267743962799812
Q gi|254780170|r   26 ILGDIKKRGFLKCGINTG-LVGFAEVKAN-GDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN  103 (342)
Q Consensus        26 tLd~Vk~rG~L~vGv~~~-~ppfs~~d~~-G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~  103 (342)
T Consensus        26 ~~~~~~~~~~~~v~~~~~~~~p~~~~~~~~~~~~G~dvdl~~~ia~~l~~~~-~~~~~~~~~~~~~~~l~~g~~D~~~~~  104 (275)
T COG0834          26 LLDKIKARGKLRVGTEATYAPPFEFLDAKGGKLVGFDVDLAKAIAKRLGGDK-KVEFVPVAWDGLIPALKAGKVDIIIAG  104 (275)
T ss_pred             HHHHHHHCCEEEEEECCCCCCCCEEECCCCCEEEEEHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHCCCCCEEEEC
T ss_conf             7766644775999972688898410238887067652999999999846774-248850688776389877998889856


Q ss_pred             CCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC--CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHH
Q ss_conf             432532011027843532234402346302113--475364178620343134269999999986299850787479899
Q gi|254780170|r  104 TDWTLLREISLGLAFRPITYFDGQGFIMHKKKG--ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEE  181 (342)
Q Consensus       104 ~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~--i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~  181 (342)
T Consensus       105 ~~~t~~r~--~~~~fs~py~~~~~~~~~~~~~~~~~~~~~DL~gk~v~v~~gt~--~~~~~~~~~~~~~~~~~~~~~~~~  180 (275)
T COG0834         105 MTITPERK--KKVDFSDPYYYSGQVLLVKKDSDIGIKSLEDLKGKKVGVQLGTT--DEAEEKAKKPGPNAKIVAYDSNAE  180 (275)
T ss_pred             CCCCHHHH--HCCCCCCCEEECCEEEEEECCCCCCCCCHHHHCCCEEEEECCCH--HHHHHHHHHCCCCCEEEECCCHHH
T ss_conf             73687775--20056777365465899976885455898895897699966845--888877640467744998188899


Q ss_pred             HHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCC-CCEEEECCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf             999987396029982504799999836780010025644423-71010002777-57999988774433112
Q gi|254780170|r  182 IDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISK-SPLAPAIIQGD-TEWYNIVSWTHYAMVTA  251 (342)
Q Consensus       182 a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~isk-EPlg~avr~gD-~~w~d~V~W~~~ali~A  251 (342)
T Consensus       181 ~~~al~~Gr~Da~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~l~~~  252 (275)
T COG0834         181 ALLALKNGRADAVVSDSAVLAGLKLLKKNPGLYVLLVFPGLSVEYLGIALRKGDDPELLEAVNKALKELKAD  252 (275)
T ss_pred             HHHHHHCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf             999998499889970688876666530155653211455665432000124685599999999999999819