HHsearch alignment for GI: 254780170 and conserved domain: COG3181
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=98.58 E-value=4.2e-06 Score=58.97 Aligned_cols=245 Identities=18% Similarity=0.189 Sum_probs=134.9
Q ss_pred EEHHHHHHHHHHHH---CCCCCEEEEEECCCCC----CHHHHHCCCEEEEEECCCCCCC---CHHC--CC-CCCCCC--C
Q ss_conf 15099999999996---7982202599814310----0267743962799812432532---0110--27-843532--2
Q gi|254780170|r 58 GFDVDFCRALSSAI---FDDPSKIQYLPLNAKE----RFLALQSKQIDILSRNTDWTLL---REIS--LG-LAFRPI--T 122 (342)
Q Consensus 58 GfDVDl~raiAaal---~gd~~kVe~v~~~~~~----rf~aL~sG~vDil~~~~T~T~~---Rd~~--~~-v~Fs~~--~ 122 (342)
T Consensus 41 g~D~-~aR~~~~~l~k~lg~~v~V~N~pGagG~ia~~~va~a~pG~t~~l~~~~~~~~~~~~~~~~~~~~~~D~~pva~v 119 (319)
T COG3181 41 GTDQ-TARALAESLSKELGQPVVVDNKPGAGGAIAAGAVAKAAPGYTILLIAGSTPALLLPILGGLPYYKLKDFTPVASL 119 (319)
T ss_pred HHHH-HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHCCCCCCCHHHCEEHHHE
T ss_conf 5889-999999999998089779995588731688999984589984488734764322154426888854423003311
Q ss_pred CCCCEEEEEECCCCCCCHHHHC-------CCCEEEEEC--CCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE
Q ss_conf 3440234630211347536417-------862034313--4269999999986299850787479899999987396029
Q gi|254780170|r 123 YFDGQGFIMHKKKGISSVSQLS-------GASICVQAG--TTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA 193 (342)
Q Consensus 123 ~~dgq~~lVrk~~~i~s~~dL~-------G~~I~v~~G--TT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA 193 (342)
T Consensus 120 ~~~p~~l~v~~~s~~~t~~dlv~~~k~~p~~v~~~~~g~Gs~dhl~~~~~~k~~Gi~~~~Vpy~g~gea~taLlgg~v~a 199 (319)
T COG3181 120 VSDPGVLVVRADSPYKTLKDLVAYAKADPGSVIGGGSGLGSADHLAGALFAKAAGIKITYVPYKGGGEALTALLGGHVDA 199 (319)
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCEEE
T ss_conf 13661599817887366999999998599808954788895889999999997389625774168648789986086654
Q ss_pred EEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHCC
Q ss_conf 982504799999836780010025644423710--10002777579999887744331121---2330152089886226
Q gi|254780170|r 194 YTGDISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGDTEWYNIVSWTHYAMVTAE---ELGITQKNINQVSKDT 268 (342)
Q Consensus 194 ~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD~~w~d~V~W~~~ali~Ae---e~git~~nv~~~~~~s 268 (342)
T Consensus 200 ~~~~~se~~~~vk----sG~lr~La-v~s~eRl~~~pdvPT~~E~G~~~~-~~~wrgvfap~g~~~e~~~~~~~a~kk~l 273 (319)
T COG3181 200 GSTNLSELLSQVK----SGTLRLLA-VFSEERLPGLPDVPTLKEQGYDVV-MSIWRGVFAPAGTPDEIIAKLSAALKKAL 273 (319)
T ss_pred EECCHHHHHHHHC----CCCEEEEE-EECHHHCCCCCCCCCHHHCCCCEE-EEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 4367124355630----57467877-534310677999998676387546-64435898079999999999999999986
Q ss_pred CCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 71778876235887650333799867999999971869998788
Q gi|254780170|r 269 TNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDR 312 (342)
Q Consensus 269 ~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~r 312 (342)
T Consensus 274 ~s~e~~~~~~~---~~~~~~~~~~eel~a~i~~~~~~~~~~~k~ 314 (319)
T COG3181 274 ASPEWQKRLKE---LGLVPSYLTGEELKAYIEKEIARWGELVKA 314 (319)
T ss_pred CCHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 39889999985---588875579899999999999999999986