HHsearch alignment for GI: 254780170 and conserved domain: PRK09986
>PRK09986 DNA-binding transcriptional activator XapR; Provisional.
Probab=92.69 E-value=0.87 Score=25.29 Aligned_cols=177 Identities=10% Similarity=-0.004 Sum_probs=106.1
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
T Consensus 79 ~~g~l~Ig~~~~~~~-----------~~l~~~l~~f~~~~--P~i~v~i~~~~~~~~~~~l~~~~~D~a~~~~~~~--~- 142 (278)
T PRK09986 79 EAGRIELGVVGTALW-----------GRMRPAMRHFLKEN--PNVEVLFREKSPSMQMALLERRELDAGIWRMALE--P- 142 (278)
T ss_pred CCCCEEEEECHHHHH-----------HHHHHHHHHHHHHC--CCEEEEEEECCHHHHHHHHHCCCCCEEEECCCCC--C-
T ss_conf 777336874216888-----------76428999999878--9839999978869999999779975899637777--8-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH
Q ss_conf 1027843532234402346302113-----47536417862034-313426999999998629985078-7479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~ 184 (342)
T Consensus 143 -~~~~~~~-~l~~~~~~~~~~~~hpla~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 220 (278)
T PRK09986 143 -NPGFTSL-RLHESAFAVAVPEEHLLASKSSVPLKALRNEYFVTLPSVHSDWGFLQRVCQQAGFSPQIIREVNEPQTVLA 220 (278)
T ss_pred -CCCCEEE-EEEECCCEEEECCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf -8774268-87741637996598733369999999985999798679986699999999977998517999998999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC
Q ss_conf 9873960299825047999998367800100256--4442371010002777
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD 234 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD 234 (342)
T Consensus 221 ~V~~G~Giailp~~~--~----~~~~~-~v~~~Pl~~~~~~-~~~lv~~~~~ 264 (278)
T PRK09986 221 MVSMGIGITLVADSY--A----QMPWP-GVVFRPLKERIPA-DLYIVYHQQQ 264 (278)
T ss_pred HHHHCCEEEEEHHHH--H----CCCCC-CEEEEECCCCCCE-EEEEEECCCC
T ss_conf 999799899841777--4----23789-9999988999803-8999984999