HHsearch alignment for GI: 254780170 and conserved domain: PRK10682
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional.
Probab=93.62 E-value=0.63 Score=26.18 Aligned_cols=232 Identities=9% Similarity=0.004 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 13899999999999984012442168999857949998717898830688989880150999999999967982202599
Q gi|254780170|r 2 YKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYL 81 (342)
Q Consensus 2 ~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v 81 (342)
T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~aa~-------~~~Lnv~nW~~Yi--------------~p~~i~~FeketG---ikV~~~ 60 (370)
T PRK10682 5 NKKWLSGLVAGALMAVSVGTLAAE-------QKTLHIYNWSDYI--------------APDTVANFEKETG---IKVVYD 60 (370)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHC-------CCEEEEECCCCCC--------------CHHHHHHHHHHHC---CEEEEE
T ss_conf 788999999999999852056642-------7979998167657--------------9779999999979---889999
Q ss_pred ECCCCCC-HHHHHCCC--EEEEEECCCCCCCCH------------------------------HCCCCCCCCCCCCCCEE
Q ss_conf 8143100-26774396--279981243253201------------------------------10278435322344023
Q gi|254780170|r 82 PLNAKER-FLALQSKQ--IDILSRNTDWTLLRE------------------------------ISLGLAFRPITYFDGQG 128 (342)
Q Consensus 82 ~~~~~~r-f~aL~sG~--vDil~~~~T~T~~Rd------------------------------~~~~v~Fs~~~~~dgq~ 128 (342)
T Consensus 61 ~~~snee~~akl~ag~~gyDvv~ps~~~-v~~~~~~gll~pLD~sklpN~~ni~p~~~~~~~~~dpg~~YsVPy~wGt~G 139 (370)
T PRK10682 61 VFDSNEVLEGKLMAGSTGFDLVVPSASF-LERQLTAGVFQPLDKSKLPNWKNLDPELLKLVAKHDPDNKYAMPYMWATTG 139 (370)
T ss_pred ECCCHHHHHHHHHCCCCCCCEEEECHHH-HHHHHHCCCCCCCCHHHCCCHHHCCHHHHHHHHCCCCCCEEEEEEEECCEE
T ss_conf 5499899999996699999889977799-999997698464770008674442999884100369997599888842259
Q ss_pred EEEECC---------CCCCCHHHHC-----CC----CEEEE-----------------ECCCHHHHH----HHHHHHCCC
Q ss_conf 463021---------1347536417-----86----20343-----------------134269999----999986299
Q gi|254780170|r 129 FIMHKK---------KGISSVSQLS-----GA----SICVQ-----------------AGTTTELTL----ADYFKAHNM 169 (342)
Q Consensus 129 ~lVrk~---------~~i~s~~dL~-----G~----~I~v~-----------------~GTT~e~~l----~~~~~~~~~ 169 (342)
T Consensus 140 I~Yn~d~v~~~~g~~~p~~sW~~l~~P~~~~k~k~~~v~~ld~~~~~~~~aL~~lG~~~n~~~~~d~~~aa~~~L~~~kp 219 (370)
T PRK10682 140 IGYNVDKVKAVLGEDAPVDSWDLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSTKADDYTGPATDLLLKLRP 219 (370)
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHCHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCH
T ss_conf 99976544223467888462998649275653035855897688899999999769998999999999999999997122
Q ss_pred CCCEEEECCHHHHHHHHHCCCEEEEEECCH-HH-HHHHHHC-CCC--HHHCCCCC-CCCCCCEEEECCCCCHHHHH---H
Q ss_conf 850787479899999987396029982504-79-9999836-780--01002564-44237101000277757999---9
Q gi|254780170|r 170 KYHPIVFERVEEIDAAYRAHRCDAYTGDIS-AL-YALKLTN-DRP--SEHVILPD-IISKSPLAPAIIQGDTEWYN---I 240 (342)
Q Consensus 170 ~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s-~L-a~~~~~~-~~p--~~~~il~e-~iskEPlg~avr~gD~~w~d---~ 240 (342)
T Consensus 220 ~--v~~~~s-~~~~~~l~~Gei~~a~~wsGd~~~~~~~~~~~~~~~~i~yv-~PkEG~~~w~D~~~Ipk~A~n~~~A~~F 295 (370)
T PRK10682 220 N--IRYFHS-SQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFS-IPKEGAMAFFDVFAMPADAKNKDEAYQF 295 (370)
T ss_pred H--CCEECC-CHHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEE-ECCCCCEEEEEEEEEECCCCCHHHHHHH
T ss_conf 2--441037-28899985486799997408999999999863578706998-1588745888788886899996999999
Q ss_pred HHHHHHH---HHHHHHHHCCHHHHH
Q ss_conf 8877443---311212330152089
Q gi|254780170|r 241 VSWTHYA---MVTAEELGITQKNIN 262 (342)
Q Consensus 241 V~W~~~a---li~Aee~git~~nv~ 262 (342)
T Consensus 296 Inf~l~Pe~aa~~~~~~~y~~~n~~ 320 (370)
T PRK10682 296 LNYLLRPDVIAHISDHVFYANANKA 320 (370)
T ss_pred HHHHCCHHHHHHHHHHHCCCCHHHH
T ss_conf 9985097999999986478875389