HHsearch alignment for GI: 254780170 and conserved domain: PRK11119
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional.
Probab=97.50 E-value=0.005 Score=39.49 Aligned_cols=176 Identities=13% Similarity=0.122 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEE--EHHHHHHHHHHHHCCCCCEE
Q ss_conf 9138999999999999840124421689998579499987178988306889898801--50999999999967982202
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKG--FDVDFCRALSSAIFDDPSKI 78 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~G--fDVDl~raiAaal~gd~~kV 78 (342)
T Consensus 2 ~~~~~l~~~a~~~~~~~~a~a~~~p-----g~g~tV~~a~----~---------~W~~~~a~t~v~~~~Le~lG---Y~V 60 (332)
T PRK11119 2 MRHKVLLATALATLISTSAFAADLP-----GKGITVQPAQ----S---------TIAEETFQTLLVSRALEKLG---YDV 60 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCEEEEEE----C---------CCHHHHHHHHHHHHHHHHCC---CCC
T ss_conf 1188899999999852276525589-----9997787601----6---------84089999999999999869---985
Q ss_pred E-EEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC-------CCCCCCCCCCCCC-EEEEEECCC----CCCCHHHHC-
Q ss_conf 5-9981431002677439627998124325320110-------2784353223440-234630211----347536417-
Q gi|254780170|r 79 Q-YLPLNAKERFLALQSKQIDILSRNTDWTLLREIS-------LGLAFRPITYFDG-QGFIMHKKK----GISSVSQLS- 144 (342)
Q Consensus 79 e-~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~-------~~v~Fs~~~~~dg-q~~lVrk~~----~i~s~~dL~- 144 (342)
T Consensus 61 e~~~~~~~~~~~~ala~GdiD~~~~~--WlP~~~~~~~~~~~~~~~~~~g~~~~ga~~G~~V~~~~~d~~~I~si~dLkd 138 (332)
T PRK11119 61 NKPKEVDYNVFYTSIASGDATFTAVN--WFPLHDDQYEAAGGDKKFYREGVIVGGAAQGYLIDKKTADKYNITNIAQLKD 138 (332)
T ss_pred CCCEECCHHHHHHHHHCCCCEEEECC--CCCCCHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHC
T ss_conf 42014446889999855884486556--1765179999732776476424335665136895023321148578998628
Q ss_pred ------------CC--CEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHH-----HHHHHHHCCCEEEEEECCH
Q ss_conf ------------86--2034313426999999998629985078747989-----9999987396029982504
Q gi|254780170|r 145 ------------GA--SICVQAGTTTELTLADYFKAHNMKYHPIVFERVE-----EIDAAYRAHRCDAYTGDIS 199 (342)
Q Consensus 145 ------------G~--~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~-----~a~~al~~Gr~DA~~~D~s 199 (342)
T Consensus 139 p~~a~~Fd~~~~GKg~i~g~~pGwg~~~~~~~~i~~ygL~~~~~~~~gs~~am~A~~~~a~~~~epiv~~~W~P 212 (332)
T PRK11119 139 PKIAKLFDTNGDGKADLTGCNPGWGCEAVINHQLKAYGLTDTVTHNQGNYAALMADTIARYKEGKPVLYYTWTP 212 (332)
T ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 67898607677885028814887206689999998679965054635648999999999998799989999677