HHsearch alignment for GI: 254780170 and conserved domain: PRK11242

>PRK11242 DNA-binding transcriptional regulator CynR; Provisional.
Probab=96.43  E-value=0.086  Score=31.64  Aligned_cols=177  Identities=10%  Similarity=0.130  Sum_probs=109.2

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE  111 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd  111 (342)
T Consensus        89 ~~G~l~ig~~~~~~~~-----------~l~~~l~~f~~~~--P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~---~~-  151 (292)
T PRK11242         89 SRGSLRLAMTPTFTAY-----------LIGPLIDAFHARY--PGITLTIREMPQERIEALLADDELDVGIAFAP---VH-  151 (292)
T ss_pred             CCCEEEEECHHHHHHH-----------HHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHCCCCCEEEEECC---CC-
T ss_conf             7765863024577888-----------7389988888648--89734899768899999986798557998368---88-


Q ss_pred             HCCCCCCCCCCCCCCEEEEEECCCC------CCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHH
Q ss_conf             1027843532234402346302113------47536417862034-313426999999998629985078-747989999
Q gi|254780170|r  112 ISLGLAFRPITYFDGQGFIMHKKKG------ISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHPI-VFERVEEID  183 (342)
Q Consensus       112 ~~~~v~Fs~~~~~dgq~~lVrk~~~------i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~  183 (342)
T Consensus       152 -~~~l~~~-~l~~~~~~~v~~~~h~la~~~~~is~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  229 (292)
T PRK11242        152 -SPEIEAQ-PLFTETLALVVGRTHPLAARRKPLTLDELADEPLVLLSAEFATREQIDRYFRRHGITPRVAIEANSISAVL  229 (292)
T ss_pred             -CCCCEEE-EECCCEEEEEEECCCHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHH
T ss_conf             -8772565-42045079999089804227999999998189989967998579999999997699985367538899999


Q ss_pred             HHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH
Q ss_conf             99873960299825047999998367800100256--44423710100027775
Q gi|254780170|r  184 AAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT  235 (342)
Q Consensus       184 ~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~  235 (342)
T Consensus       230 ~~V~~g~Gi~ilP~~---~~~----~~~-~l~~i~l~~~~~~r~i~lv~~k~~~  275 (292)
T PRK11242        230 EIVRRGRLATLLPAA---IAR----EHD-DLCAVALDPPLPQRTAALLRRKGAY  275 (292)
T ss_pred             HHHHHCCEEEEEHHH---HHH----HCC-CEEEEECCCCCCEEEEEEEEECCCC
T ss_conf             999979969970289---860----089-9899989899870399999989398