HHsearch alignment for GI: 254780170 and conserved domain: PRK11242
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional.
Probab=96.43 E-value=0.086 Score=31.64 Aligned_cols=177 Identities=10% Similarity=0.130 Sum_probs=109.2
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
T Consensus 89 ~~G~l~ig~~~~~~~~-----------~l~~~l~~f~~~~--P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~---~~- 151 (292)
T PRK11242 89 SRGSLRLAMTPTFTAY-----------LIGPLIDAFHARY--PGITLTIREMPQERIEALLADDELDVGIAFAP---VH- 151 (292)
T ss_pred CCCEEEEECHHHHHHH-----------HHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHCCCCCEEEEECC---CC-
T ss_conf 7765863024577888-----------7389988888648--89734899768899999986798557998368---88-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC------CCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHH
Q ss_conf 1027843532234402346302113------47536417862034-313426999999998629985078-747989999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG------ISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHPI-VFERVEEID 183 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~------i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~ 183 (342)
T Consensus 152 -~~~l~~~-~l~~~~~~~v~~~~h~la~~~~~is~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 229 (292)
T PRK11242 152 -SPEIEAQ-PLFTETLALVVGRTHPLAARRKPLTLDELADEPLVLLSAEFATREQIDRYFRRHGITPRVAIEANSISAVL 229 (292)
T ss_pred -CCCCEEE-EECCCEEEEEEECCCHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHH
T ss_conf -8772565-42045079999089804227999999998189989967998579999999997699985367538899999
Q ss_pred HHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH
Q ss_conf 99873960299825047999998367800100256--44423710100027775
Q gi|254780170|r 184 AAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT 235 (342)
Q Consensus 184 ~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~ 235 (342)
T Consensus 230 ~~V~~g~Gi~ilP~~---~~~----~~~-~l~~i~l~~~~~~r~i~lv~~k~~~ 275 (292)
T PRK11242 230 EIVRRGRLATLLPAA---IAR----EHD-DLCAVALDPPLPQRTAALLRRKGAY 275 (292)
T ss_pred HHHHHCCEEEEEHHH---HHH----HCC-CEEEEECCCCCCEEEEEEEEECCCC
T ss_conf 999979969970289---860----089-9899989899870399999989398